EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000013518 (Gene tree)
Gene ID: 101070705
Gene Symbol: thoc1
Alias: p84
Full Name: THO complex 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 8720 bases
Position: chr22:1283860-1292579
Accession: 101070705
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000034491	efThoc1	PF11957.8	6.1e-145	1	1
ENSTRUP00000034490	efThoc1	PF11957.8	1.4e-115	1	2
ENSTRUP00000034490	efThoc1	PF11957.8	1.4e-115	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000034617	-	6738	XM_003975370	ENSTRUP00000034491	654 (aa)	XP_003975419	H2UC23
ENSTRUT00000034616	-	1854	-	ENSTRUP00000034490	617 (aa)	-	H2UC22

Gene Model

Click here to download ENSTRUG00000013518's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000013518's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000013518	thoc1	99	72.086	ENSG00000079134	THOC1	99	76.103	Homo_sapiens
ENSTRUG00000013518	thoc1	99	72.239	ENSAMEG00000006645	THOC1	98	72.239	Ailuropoda_melanoleuca
ENSTRUG00000013518	thoc1	94	89.739	ENSACIG00000019392	thoc1	95	89.739	Amphilophus_citrinellus
ENSTRUG00000013518	thoc1	100	86.239	ENSAOCG00000008391	thoc1	100	86.239	Amphiprion_ocellaris
ENSTRUG00000013518	thoc1	100	91.743	ENSAPEG00000001093	thoc1	100	91.743	Amphiprion_percula
ENSTRUG00000013518	thoc1	100	90.826	ENSATEG00000004783	thoc1	100	90.826	Anabas_testudineus
ENSTRUG00000013518	thoc1	99	71.407	ENSAPLG00000016149	THOC1	98	71.407	Anas_platyrhynchos
ENSTRUG00000013518	thoc1	99	71.842	ENSACAG00000008307	THOC1	97	71.233	Anolis_carolinensis
ENSTRUG00000013518	thoc1	99	71.472	ENSANAG00000033200	THOC1	98	71.472	Aotus_nancymaae
ENSTRUG00000013518	thoc1	100	90.673	ENSACLG00000016836	thoc1	100	90.673	Astatotilapia_calliptera
ENSTRUG00000013518	thoc1	96	75.862	ENSAMXG00000014708	thoc1	98	75.196	Astyanax_mexicanus
ENSTRUG00000013518	thoc1	99	72.393	ENSBTAG00000019215	THOC1	98	72.393	Bos_taurus
ENSTRUG00000013518	thoc1	69	35.560	WBGene00020172	thoc-1	69	35.865	Caenorhabditis_elegans
ENSTRUG00000013518	thoc1	99	72.239	ENSCJAG00000020450	THOC1	98	72.239	Callithrix_jacchus
ENSTRUG00000013518	thoc1	99	72.393	ENSCAFG00000018324	THOC1	98	72.393	Canis_familiaris
ENSTRUG00000013518	thoc1	99	72.393	ENSCAFG00020017894	THOC1	98	72.393	Canis_lupus_dingo
ENSTRUG00000013518	thoc1	99	72.393	ENSCHIG00000015399	THOC1	98	73.113	Capra_hircus
ENSTRUG00000013518	thoc1	99	71.779	ENSTSYG00000010585	THOC1	98	71.779	Carlito_syrichta
ENSTRUG00000013518	thoc1	97	52.877	ENSCAPG00000016270	THOC1	97	52.877	Cavia_aperea
ENSTRUG00000013518	thoc1	99	71.012	ENSCPOG00000000959	THOC1	98	71.012	Cavia_porcellus
ENSTRUG00000013518	thoc1	99	72.239	ENSCCAG00000025766	THOC1	98	72.239	Cebus_capucinus
ENSTRUG00000013518	thoc1	99	70.245	ENSCATG00000028180	THOC1	96	77.168	Cercocebus_atys
ENSTRUG00000013518	thoc1	97	72.484	ENSCLAG00000009117	THOC1	99	72.484	Chinchilla_lanigera
ENSTRUG00000013518	thoc1	99	72.239	ENSCSAG00000017631	THOC1	98	72.239	Chlorocebus_sabaeus
ENSTRUG00000013518	thoc1	79	77.178	ENSCHOG00000010609	THOC1	78	77.178	Choloepus_hoffmanni
ENSTRUG00000013518	thoc1	99	72.741	ENSCPBG00000027558	THOC1	99	72.741	Chrysemys_picta_bellii
ENSTRUG00000013518	thoc1	74	48.081	ENSCING00000007663	-	99	48.081	Ciona_intestinalis
ENSTRUG00000013518	thoc1	94	47.559	ENSCSAVG00000010649	-	100	47.310	Ciona_savignyi
ENSTRUG00000013518	thoc1	99	71.889	ENSCANG00000034265	THOC1	96	77.778	Colobus_angolensis_palliatus
ENSTRUG00000013518	thoc1	99	71.472	ENSCGRG00001016464	Thoc1	98	71.472	Cricetulus_griseus_chok1gshd
ENSTRUG00000013518	thoc1	99	71.362	ENSCGRG00000010269	-	99	72.170	Cricetulus_griseus_crigri
ENSTRUG00000013518	thoc1	90	58.673	ENSCGRG00000003390	-	97	58.503	Cricetulus_griseus_crigri
ENSTRUG00000013518	thoc1	99	87.994	ENSCSEG00000012486	thoc1	99	88.746	Cynoglossus_semilaevis
ENSTRUG00000013518	thoc1	100	88.073	ENSCVAG00000020600	thoc1	100	88.073	Cyprinodon_variegatus
ENSTRUG00000013518	thoc1	99	82.796	ENSDARG00000088246	thoc1	99	82.796	Danio_rerio
ENSTRUG00000013518	thoc1	99	71.889	ENSDNOG00000019217	THOC1	98	71.889	Dasypus_novemcinctus
ENSTRUG00000013518	thoc1	98	67.236	ENSDORG00000008060	Thoc1	98	67.925	Dipodomys_ordii
ENSTRUG00000013518	thoc1	99	37.394	FBgn0037382	Hpr1	74	42.266	Drosophila_melanogaster
ENSTRUG00000013518	thoc1	90	55.026	ENSETEG00000004165	THOC1	98	55.026	Echinops_telfairi
ENSTRUG00000013518	thoc1	92	62.748	ENSEBUG00000005998	thoc1	98	63.350	Eptatretus_burgeri
ENSTRUG00000013518	thoc1	99	71.933	ENSEASG00005002549	THOC1	94	71.319	Equus_asinus_asinus
ENSTRUG00000013518	thoc1	99	72.239	ENSECAG00000009267	THOC1	88	72.239	Equus_caballus
ENSTRUG00000013518	thoc1	79	56.738	ENSEEUG00000012214	-	81	56.738	Erinaceus_europaeus
ENSTRUG00000013518	thoc1	99	86.280	ENSELUG00000023277	thoc1	99	86.280	Esox_lucius
ENSTRUG00000013518	thoc1	99	72.699	ENSFCAG00000022454	THOC1	85	72.699	Felis_catus
ENSTRUG00000013518	thoc1	97	71.919	ENSFALG00000006205	THOC1	99	71.919	Ficedula_albicollis
ENSTRUG00000013518	thoc1	98	72.050	ENSFDAG00000006842	THOC1	99	72.050	Fukomys_damarensis
ENSTRUG00000013518	thoc1	100	88.991	ENSFHEG00000008841	thoc1	100	88.991	Fundulus_heteroclitus
ENSTRUG00000013518	thoc1	99	86.963	ENSGMOG00000011486	thoc1	99	86.963	Gadus_morhua
ENSTRUG00000013518	thoc1	99	72.129	ENSGALG00000014915	THOC1	99	71.256	Gallus_gallus
ENSTRUG00000013518	thoc1	100	87.768	ENSGAFG00000021464	thoc1	100	87.768	Gambusia_affinis
ENSTRUG00000013518	thoc1	100	89.908	ENSGACG00000017361	thoc1	100	89.908	Gasterosteus_aculeatus
ENSTRUG00000013518	thoc1	99	73.201	ENSGAGG00000021230	-	97	73.201	Gopherus_agassizii
ENSTRUG00000013518	thoc1	99	72.239	ENSGGOG00000003013	THOC1	98	72.239	Gorilla_gorilla
ENSTRUG00000013518	thoc1	100	90.979	ENSHBUG00000009096	thoc1	100	90.979	Haplochromis_burtoni
ENSTRUG00000013518	thoc1	79	58.201	ENSHGLG00000009264	-	98	68.108	Heterocephalus_glaber_female
ENSTRUG00000013518	thoc1	99	72.086	ENSHGLG00000003712	-	98	72.086	Heterocephalus_glaber_female
ENSTRUG00000013518	thoc1	99	71.933	ENSHGLG00100003570	THOC1	98	71.933	Heterocephalus_glaber_male
ENSTRUG00000013518	thoc1	77	57.143	ENSHGLG00100002225	-	98	57.143	Heterocephalus_glaber_male
ENSTRUG00000013518	thoc1	99	68.682	ENSIPUG00000005306	thoc1	99	67.597	Ictalurus_punctatus
ENSTRUG00000013518	thoc1	99	71.779	ENSSTOG00000006484	THOC1	98	71.779	Ictidomys_tridecemlineatus
ENSTRUG00000013518	thoc1	52	73.547	ENSJJAG00000014893	-	96	73.547	Jaculus_jaculus
ENSTRUG00000013518	thoc1	99	89.587	ENSKMAG00000003904	thoc1	99	89.587	Kryptolebias_marmoratus
ENSTRUG00000013518	thoc1	100	90.979	ENSLBEG00000020372	thoc1	98	90.979	Labrus_bergylta
ENSTRUG00000013518	thoc1	99	71.975	ENSLACG00000014869	THOC1	99	71.669	Latimeria_chalumnae
ENSTRUG00000013518	thoc1	99	80.793	ENSLOCG00000002097	thoc1	99	80.488	Lepisosteus_oculatus
ENSTRUG00000013518	thoc1	99	71.933	ENSLAFG00000009585	THOC1	98	71.933	Loxodonta_africana
ENSTRUG00000013518	thoc1	99	72.239	ENSMFAG00000041520	THOC1	98	72.239	Macaca_fascicularis
ENSTRUG00000013518	thoc1	99	72.239	ENSMMUG00000004662	THOC1	98	72.239	Macaca_mulatta
ENSTRUG00000013518	thoc1	99	72.239	ENSMNEG00000040177	THOC1	98	72.239	Macaca_nemestrina
ENSTRUG00000013518	thoc1	99	72.239	ENSMLEG00000034201	THOC1	98	72.239	Mandrillus_leucophaeus
ENSTRUG00000013518	thoc1	96	88.357	ENSMAMG00000016747	thoc1	100	88.357	Mastacembelus_armatus
ENSTRUG00000013518	thoc1	100	90.673	ENSMZEG00005024609	thoc1	100	90.673	Maylandia_zebra
ENSTRUG00000013518	thoc1	97	72.144	ENSMGAG00000009811	THOC1	99	72.144	Meleagris_gallopavo
ENSTRUG00000013518	thoc1	99	71.012	ENSMAUG00000010272	Thoc1	98	71.012	Mesocricetus_auratus
ENSTRUG00000013518	thoc1	99	72.086	ENSMICG00000027200	THOC1	98	72.086	Microcebus_murinus
ENSTRUG00000013518	thoc1	99	70.399	ENSMOCG00000014536	-	85	70.399	Microtus_ochrogaster
ENSTRUG00000013518	thoc1	99	62.270	ENSMOCG00000014924	-	95	61.656	Microtus_ochrogaster
ENSTRUG00000013518	thoc1	93	91.340	ENSMMOG00000011772	thoc1	100	91.340	Mola_mola
ENSTRUG00000013518	thoc1	99	70.821	ENSMODG00000021482	THOC1	98	70.821	Monodelphis_domestica
ENSTRUG00000013518	thoc1	100	88.838	ENSMALG00000021872	thoc1	100	88.838	Monopterus_albus
ENSTRUG00000013518	thoc1	99	70.706	MGP_CAROLIEiJ_G0021989	Thoc1	98	70.706	Mus_caroli
ENSTRUG00000013518	thoc1	99	70.859	ENSMUSG00000024287	Thoc1	98	79.577	Mus_musculus
ENSTRUG00000013518	thoc1	99	70.859	MGP_PahariEiJ_G0018726	Thoc1	98	70.859	Mus_pahari
ENSTRUG00000013518	thoc1	99	70.859	MGP_SPRETEiJ_G0022905	Thoc1	98	70.859	Mus_spretus
ENSTRUG00000013518	thoc1	99	72.239	ENSMPUG00000005448	THOC1	98	72.239	Mustela_putorius_furo
ENSTRUG00000013518	thoc1	99	71.012	ENSMLUG00000004090	-	98	71.012	Myotis_lucifugus
ENSTRUG00000013518	thoc1	90	65.436	ENSMLUG00000027965	-	99	65.604	Myotis_lucifugus
ENSTRUG00000013518	thoc1	61	65.915	ENSMLUG00000024912	-	100	65.915	Myotis_lucifugus
ENSTRUG00000013518	thoc1	97	57.614	ENSNGAG00000008061	-	97	57.614	Nannospalax_galili
ENSTRUG00000013518	thoc1	99	71.779	ENSNGAG00000001401	-	98	71.779	Nannospalax_galili
ENSTRUG00000013518	thoc1	98	88.715	ENSNBRG00000005991	thoc1	97	88.715	Neolamprologus_brichardi
ENSTRUG00000013518	thoc1	99	72.239	ENSNLEG00000006835	THOC1	98	72.239	Nomascus_leucogenys
ENSTRUG00000013518	thoc1	89	75.589	ENSMEUG00000009756	THOC1	82	75.589	Notamacropus_eugenii
ENSTRUG00000013518	thoc1	99	58.436	ENSOPRG00000001108	THOC1	98	58.436	Ochotona_princeps
ENSTRUG00000013518	thoc1	99	66.564	ENSODEG00000006623	THOC1	98	66.564	Octodon_degus
ENSTRUG00000013518	thoc1	100	91.131	ENSONIG00000009440	thoc1	98	91.244	Oreochromis_niloticus
ENSTRUG00000013518	thoc1	99	72.086	ENSOCUG00000011601	THOC1	98	72.086	Oryctolagus_cuniculus
ENSTRUG00000013518	thoc1	100	89.908	ENSORLG00000017629	thoc1	100	89.908	Oryzias_latipes
ENSTRUG00000013518	thoc1	100	89.755	ENSORLG00020007567	thoc1	100	89.755	Oryzias_latipes_hni
ENSTRUG00000013518	thoc1	100	89.908	ENSORLG00015007356	thoc1	100	89.908	Oryzias_latipes_hsok
ENSTRUG00000013518	thoc1	100	88.838	ENSOMEG00000008200	thoc1	100	88.226	Oryzias_melastigma
ENSTRUG00000013518	thoc1	99	68.971	ENSOGAG00000000470	THOC1	98	68.971	Otolemur_garnettii
ENSTRUG00000013518	thoc1	98	72.628	ENSOARG00000009238	THOC1	97	72.628	Ovis_aries
ENSTRUG00000013518	thoc1	99	72.239	ENSPPAG00000031812	THOC1	98	72.239	Pan_paniscus
ENSTRUG00000013518	thoc1	99	72.086	ENSPPRG00000023794	THOC1	96	77.457	Panthera_pardus
ENSTRUG00000013518	thoc1	99	72.086	ENSPTIG00000007469	THOC1	96	77.457	Panthera_tigris_altaica
ENSTRUG00000013518	thoc1	99	71.320	ENSPTRG00000009816	THOC1	98	71.320	Pan_troglodytes
ENSTRUG00000013518	thoc1	99	71.341	ENSPANG00000008665	THOC1	98	71.341	Papio_anubis
ENSTRUG00000013518	thoc1	99	84.098	ENSPKIG00000005906	thoc1	99	84.709	Paramormyrops_kingsleyae
ENSTRUG00000013518	thoc1	81	74.621	ENSPSIG00000007691	THOC1	97	74.621	Pelodiscus_sinensis
ENSTRUG00000013518	thoc1	94	84.355	ENSPMGG00000008279	thoc1	95	84.355	Periophthalmus_magnuspinnatus
ENSTRUG00000013518	thoc1	99	71.012	ENSPEMG00000021789	Thoc1	98	71.012	Peromyscus_maniculatus_bairdii
ENSTRUG00000013518	thoc1	78	71.311	ENSPCIG00000026942	THOC1	97	71.311	Phascolarctos_cinereus
ENSTRUG00000013518	thoc1	100	87.920	ENSPFOG00000011673	thoc1	100	87.920	Poecilia_formosa
ENSTRUG00000013518	thoc1	100	88.073	ENSPLAG00000019648	thoc1	100	88.073	Poecilia_latipinna
ENSTRUG00000013518	thoc1	100	88.073	ENSPMEG00000007083	thoc1	100	88.073	Poecilia_mexicana
ENSTRUG00000013518	thoc1	100	88.226	ENSPREG00000006719	thoc1	100	88.226	Poecilia_reticulata
ENSTRUG00000013518	thoc1	74	75.926	ENSPPYG00000009049	-	98	75.926	Pongo_abelii
ENSTRUG00000013518	thoc1	91	73.499	ENSPCAG00000005320	THOC1	91	73.499	Procavia_capensis
ENSTRUG00000013518	thoc1	99	71.626	ENSPCOG00000009234	THOC1	98	71.626	Propithecus_coquereli
ENSTRUG00000013518	thoc1	99	70.552	ENSPVAG00000004007	THOC1	98	70.552	Pteropus_vampyrus
ENSTRUG00000013518	thoc1	100	90.979	ENSPNYG00000019152	thoc1	100	90.979	Pundamilia_nyererei
ENSTRUG00000013518	thoc1	99	82.236	ENSPNAG00000023390	thoc1	99	81.930	Pygocentrus_nattereri
ENSTRUG00000013518	thoc1	90	56.746	ENSRNOG00000015332	Thoc1	98	56.746	Rattus_norvegicus
ENSTRUG00000013518	thoc1	99	71.472	ENSRBIG00000033738	THOC1	99	73.830	Rhinopithecus_bieti
ENSTRUG00000013518	thoc1	99	72.239	ENSRROG00000044988	THOC1	96	77.778	Rhinopithecus_roxellana
ENSTRUG00000013518	thoc1	99	72.239	ENSSBOG00000016556	THOC1	98	72.239	Saimiri_boliviensis_boliviensis
ENSTRUG00000013518	thoc1	99	71.779	ENSSHAG00000014829	THOC1	98	71.779	Sarcophilus_harrisii
ENSTRUG00000013518	thoc1	99	85.911	ENSSFOG00015021527	thoc1	99	85.911	Scleropages_formosus
ENSTRUG00000013518	thoc1	100	87.062	ENSSMAG00000018465	thoc1	99	87.062	Scophthalmus_maximus
ENSTRUG00000013518	thoc1	100	91.284	ENSSDUG00000016810	thoc1	100	91.284	Seriola_dumerili
ENSTRUG00000013518	thoc1	100	90.979	ENSSLDG00000015555	thoc1	100	90.979	Seriola_lalandi_dorsalis
ENSTRUG00000013518	thoc1	87	73.359	ENSSARG00000006910	THOC1	86	73.359	Sorex_araneus
ENSTRUG00000013518	thoc1	98	72.162	ENSSPUG00000007238	THOC1	98	71.846	Sphenodon_punctatus
ENSTRUG00000013518	thoc1	100	86.738	ENSSPAG00000018847	thoc1	99	86.738	Stegastes_partitus
ENSTRUG00000013518	thoc1	99	72.239	ENSSSCG00000025653	THOC1	93	72.239	Sus_scrofa
ENSTRUG00000013518	thoc1	99	72.282	ENSTGUG00000010204	THOC1	99	72.282	Taeniopygia_guttata
ENSTRUG00000013518	thoc1	100	95.260	ENSTNIG00000008473	thoc1	99	95.260	Tetraodon_nigroviridis
ENSTRUG00000013518	thoc1	99	64.724	ENSTBEG00000016920	THOC1	98	64.724	Tupaia_belangeri
ENSTRUG00000013518	thoc1	99	65.951	ENSTTRG00000016664	THOC1	98	65.951	Tursiops_truncatus
ENSTRUG00000013518	thoc1	99	72.393	ENSUAMG00000002527	THOC1	98	72.393	Ursus_americanus
ENSTRUG00000013518	thoc1	99	72.393	ENSUMAG00000019693	THOC1	98	72.393	Ursus_maritimus
ENSTRUG00000013518	thoc1	67	67.220	ENSVPAG00000003726	-	66	67.220	Vicugna_pacos
ENSTRUG00000013518	thoc1	99	72.393	ENSVVUG00000004384	THOC1	98	72.393	Vulpes_vulpes
ENSTRUG00000013518	thoc1	99	69.605	ENSXETG00000003155	thoc1	97	69.605	Xenopus_tropicalis
ENSTRUG00000013518	thoc1	96	82.989	ENSXCOG00000016085	thoc1	91	82.989	Xiphophorus_couchianus
ENSTRUG00000013518	thoc1	100	88.379	ENSXMAG00000002353	thoc1	100	88.379	Xiphophorus_maculatus