EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTRUG00000013905 (Gene tree)
Gene ID
-
Gene Symbol
CPSF3 (1 of many)
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Takifugu_rubripes
Status
putative
Strand
Plus strand
Length
2592 bases
Position
chr2:6350543-6353134
Accession
2326
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTRUP00000035550CPSF73-100_CPF11718.84.2e-3012
ENSTRUP00000035550CPSF73-100_CPF11718.84.2e-3022
ENSTRUP00000035550Beta-CaspPF10996.82.3e-1911
ENSTRUP00000035550RMMBLPF07521.122.1e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTRUT00000035678CPSF3 (1 of many)-2011104-ENSTRUP00000035550367 (aa)-H2UF31
Gene Model
Click here to download ENSTRUG00000013905's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000013905's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTRUG00000013905CPSF39972.139ENSTRUG00000007030cpsf39772.139
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTRUG00000013905CPSF39972.727ENSG00000119203CPSF36272.727Homo_sapiens
ENSTRUG00000013905CPSF39973.086ENSAPOG00000022087cpsf35973.829Acanthochromis_polyacanthus
ENSTRUG00000013905CPSF39973.219ENSAMEG00000008493CPSF35973.219Ailuropoda_melanoleuca
ENSTRUG00000013905CPSF310079.607ENSACIG00000023663CPSF36479.607Amphilophus_citrinellus
ENSTRUG00000013905CPSF39970.936ENSACIG00000009846cpsf36370.936Amphilophus_citrinellus
ENSTRUG00000013905CPSF310079.310ENSAOCG00000010077CPSF36378.841Amphiprion_ocellaris
ENSTRUG00000013905CPSF39973.086ENSAOCG00000022056cpsf35873.086Amphiprion_ocellaris
ENSTRUG00000013905CPSF310079.310ENSAPEG00000021167CPSF36378.055Amphiprion_percula
ENSTRUG00000013905CPSF39973.737ENSAPEG00000019526cpsf36373.737Amphiprion_percula
ENSTRUG00000013905CPSF39973.869ENSATEG00000003959cpsf36373.869Anabas_testudineus
ENSTRUG00000013905CPSF310083.990ENSATEG00000014525CPSF35783.990Anabas_testudineus
ENSTRUG00000013905CPSF39973.219ENSAPLG00000006941CPSF35973.219Anas_platyrhynchos
ENSTRUG00000013905CPSF39971.499ENSACAG00000001759CPSF36471.499Anolis_carolinensis
ENSTRUG00000013905CPSF39967.246ENSANAG00000031254CPSF35967.246Aotus_nancymaae
ENSTRUG00000013905CPSF310079.607ENSACLG00000018846CPSF36479.607Astatotilapia_calliptera
ENSTRUG00000013905CPSF39973.183ENSACLG00000014484cpsf36373.183Astatotilapia_calliptera
ENSTRUG00000013905CPSF310079.310ENSAMXG00000004786cpsf36374.687Astyanax_mexicanus
ENSTRUG00000013905CPSF39973.219ENSBTAG00000019735CPSF35973.219Bos_taurus
ENSTRUG00000013905CPSF39972.973ENSCJAG00000006276CPSF35972.973Callithrix_jacchus
ENSTRUG00000013905CPSF39973.219ENSCAFG00000003375CPSF35673.219Canis_familiaris
ENSTRUG00000013905CPSF38275.660ENSCAFG00020026799CPSF35575.660Canis_lupus_dingo
ENSTRUG00000013905CPSF39973.219ENSCHIG00000013973CPSF35973.219Capra_hircus
ENSTRUG00000013905CPSF39973.219ENSTSYG00000002967CPSF35973.219Carlito_syrichta
ENSTRUG00000013905CPSF39972.482ENSCAPG00000013851CPSF36172.482Cavia_aperea
ENSTRUG00000013905CPSF39972.482ENSCPOG00000011299CPSF35972.482Cavia_porcellus
ENSTRUG00000013905CPSF39972.973ENSCCAG00000036730CPSF36072.973Cebus_capucinus
ENSTRUG00000013905CPSF39971.500ENSCATG00000014770CPSF35279.801Cercocebus_atys
ENSTRUG00000013905CPSF39972.482ENSCLAG00000002727CPSF35972.482Chinchilla_lanigera
ENSTRUG00000013905CPSF39959.951ENSCSAG00000007125CPSF35659.951Chlorocebus_sabaeus
ENSTRUG00000013905CPSF39943.415ENSCHOG00000000180CPSF36143.415Choloepus_hoffmanni
ENSTRUG00000013905CPSF39973.219ENSCPBG00000014074CPSF35873.219Chrysemys_picta_bellii
ENSTRUG00000013905CPSF39955.746ENSCING00000007214-5855.746Ciona_intestinalis
ENSTRUG00000013905CPSF39969.231ENSCANG00000034435CPSF36169.231Colobus_angolensis_palliatus
ENSTRUG00000013905CPSF39973.219ENSCGRG00001013134Cpsf35973.219Cricetulus_griseus_chok1gshd
ENSTRUG00000013905CPSF39973.219ENSCGRG00000018319Cpsf35973.219Cricetulus_griseus_crigri
ENSTRUG00000013905CPSF310077.094ENSCSEG00000002021CPSF36377.094Cynoglossus_semilaevis
ENSTRUG00000013905CPSF310078.325ENSCVAG00000015067CPSF35978.325Cyprinodon_variegatus
ENSTRUG00000013905CPSF37665.924ENSCVAG00000022039-9465.924Cyprinodon_variegatus
ENSTRUG00000013905CPSF310074.631ENSDARG00000027649cpsf35974.631Danio_rerio
ENSTRUG00000013905CPSF39972.304ENSDNOG00000008940CPSF35672.304Dasypus_novemcinctus
ENSTRUG00000013905CPSF39173.995ENSDORG00000014263Cpsf35773.995Dipodomys_ordii
ENSTRUG00000013905CPSF310052.840FBgn0261065Cpsf735853.202Drosophila_melanogaster
ENSTRUG00000013905CPSF39175.067ENSETEG00000003893CPSF35775.067Echinops_telfairi
ENSTRUG00000013905CPSF39961.939ENSEBUG00000009018cpsf35962.648Eptatretus_burgeri
ENSTRUG00000013905CPSF39973.219ENSEASG00005003970CPSF35973.219Equus_asinus_asinus
ENSTRUG00000013905CPSF39973.219ENSECAG00000019911CPSF35973.219Equus_caballus
ENSTRUG00000013905CPSF39961.179ENSEEUG00000015422CPSF35961.179Erinaceus_europaeus
ENSTRUG00000013905CPSF39976.441ENSELUG00000013775cpsf36376.441Esox_lucius
ENSTRUG00000013905CPSF39973.219ENSFCAG00000007852CPSF36273.219Felis_catus
ENSTRUG00000013905CPSF39972.727ENSFALG00000006572CPSF36272.727Ficedula_albicollis
ENSTRUG00000013905CPSF39971.990ENSFDAG00000006317CPSF35971.990Fukomys_damarensis
ENSTRUG00000013905CPSF39971.358ENSFHEG00000014774cpsf35871.358Fundulus_heteroclitus
ENSTRUG00000013905CPSF310064.964ENSFHEG00000012186CPSF310064.964Fundulus_heteroclitus
ENSTRUG00000013905CPSF39973.020ENSGMOG00000003157cpsf35873.020Gadus_morhua
ENSTRUG00000013905CPSF39972.482ENSGALG00000016424CPSF36472.482Gallus_gallus
ENSTRUG00000013905CPSF310078.571ENSGAFG00000008016CPSF35978.571Gambusia_affinis
ENSTRUG00000013905CPSF39972.070ENSGAFG00000019449cpsf36372.070Gambusia_affinis
ENSTRUG00000013905CPSF39973.464ENSGAGG00000025583CPSF38073.464Gopherus_agassizii
ENSTRUG00000013905CPSF39973.219ENSGGOG00000001757CPSF36473.219Gorilla_gorilla
ENSTRUG00000013905CPSF310079.653ENSHBUG00000014332CPSF310079.653Haplochromis_burtoni
ENSTRUG00000013905CPSF39973.183ENSHBUG00000001188cpsf36373.183Haplochromis_burtoni
ENSTRUG00000013905CPSF39972.482ENSHGLG00000000666CPSF35972.482Heterocephalus_glaber_female
ENSTRUG00000013905CPSF39972.482ENSHGLG00100007765CPSF35972.482Heterocephalus_glaber_male
ENSTRUG00000013905CPSF39978.465ENSHCOG00000015957CPSF35878.465Hippocampus_comes
ENSTRUG00000013905CPSF39971.287ENSHCOG00000007251cpsf35871.287Hippocampus_comes
ENSTRUG00000013905CPSF310074.447ENSIPUG00000023488cpsf36374.442Ictalurus_punctatus
ENSTRUG00000013905CPSF39973.710ENSSTOG00000004476CPSF35973.710Ictidomys_tridecemlineatus
ENSTRUG00000013905CPSF39972.482ENSJJAG00000023415Cpsf35972.482Jaculus_jaculus
ENSTRUG00000013905CPSF39971.358ENSKMAG00000002806cpsf35871.358Kryptolebias_marmoratus
ENSTRUG00000013905CPSF310079.557ENSKMAG00000007317CPSF35979.557Kryptolebias_marmoratus
ENSTRUG00000013905CPSF39180.376ENSLBEG00000013492CPSF35680.376Labrus_bergylta
ENSTRUG00000013905CPSF39964.304ENSLBEG00000020569cpsf35264.304Labrus_bergylta
ENSTRUG00000013905CPSF39174.387ENSLBEG00000015018-9974.387Labrus_bergylta
ENSTRUG00000013905CPSF310061.858ENSLACG00000008308CPSF35961.858Latimeria_chalumnae
ENSTRUG00000013905CPSF310074.390ENSLOCG00000016823cpsf35974.390Lepisosteus_oculatus
ENSTRUG00000013905CPSF39973.464ENSLAFG00000009467CPSF35973.464Loxodonta_africana
ENSTRUG00000013905CPSF39972.973ENSMFAG00000001339CPSF36272.973Macaca_fascicularis
ENSTRUG00000013905CPSF39972.973ENSMMUG00000018038CPSF36272.973Macaca_mulatta
ENSTRUG00000013905CPSF39070.777ENSMNEG00000039447CPSF35970.777Macaca_nemestrina
ENSTRUG00000013905CPSF39973.219ENSMLEG00000026825CPSF35973.219Mandrillus_leucophaeus
ENSTRUG00000013905CPSF310080.846ENSMAMG00000008835CPSF36380.846Mastacembelus_armatus
ENSTRUG00000013905CPSF39973.267ENSMAMG00000003076cpsf35873.267Mastacembelus_armatus
ENSTRUG00000013905CPSF310079.803ENSMZEG00005006258CPSF36479.607Maylandia_zebra
ENSTRUG00000013905CPSF39973.183ENSMZEG00005014358cpsf36373.183Maylandia_zebra
ENSTRUG00000013905CPSF39972.482ENSMGAG00000013995CPSF36172.482Meleagris_gallopavo
ENSTRUG00000013905CPSF39170.292ENSMAUG00000000166Cpsf39970.292Mesocricetus_auratus
ENSTRUG00000013905CPSF39968.550ENSMICG00000002363CPSF36368.550Microcebus_murinus
ENSTRUG00000013905CPSF39968.473ENSMOCG00000020067Cpsf35768.473Microtus_ochrogaster
ENSTRUG00000013905CPSF39971.355ENSMMOG00000018212CPSF36071.355Mola_mola
ENSTRUG00000013905CPSF39972.222ENSMODG00000014703CPSF35972.222Monodelphis_domestica
ENSTRUG00000013905CPSF310076.471ENSMALG00000011474CPSF36276.471Monopterus_albus
ENSTRUG00000013905CPSF39974.752ENSMALG00000016416cpsf36374.000Monopterus_albus
ENSTRUG00000013905CPSF39972.439MGP_CAROLIEiJ_G0017640Cpsf35972.439Mus_caroli
ENSTRUG00000013905CPSF39972.439ENSMUSG00000054309Cpsf35972.439Mus_musculus
ENSTRUG00000013905CPSF39972.439MGP_PahariEiJ_G0029397Cpsf35972.439Mus_pahari
ENSTRUG00000013905CPSF39972.439MGP_SPRETEiJ_G0018481Cpsf35972.439Mus_spretus
ENSTRUG00000013905CPSF39972.549ENSMPUG00000013213CPSF35972.549Mustela_putorius_furo
ENSTRUG00000013905CPSF39973.039ENSMLUG00000010636CPSF35973.039Myotis_lucifugus
ENSTRUG00000013905CPSF39972.973ENSNGAG00000019836Cpsf35972.973Nannospalax_galili
ENSTRUG00000013905CPSF310079.607ENSNBRG00000010525CPSF36479.607Neolamprologus_brichardi
ENSTRUG00000013905CPSF39972.682ENSNBRG00000004770cpsf36372.682Neolamprologus_brichardi
ENSTRUG00000013905CPSF39972.973ENSNLEG00000013359CPSF36272.973Nomascus_leucogenys
ENSTRUG00000013905CPSF39052.011ENSMEUG00000013117-5452.011Notamacropus_eugenii
ENSTRUG00000013905CPSF39071.390ENSOPRG00000008902CPSF35471.390Ochotona_princeps
ENSTRUG00000013905CPSF39973.219ENSODEG00000003129CPSF35973.219Octodon_degus
ENSTRUG00000013905CPSF39972.346ENSONIG00000018812cpsf35872.346Oreochromis_niloticus
ENSTRUG00000013905CPSF39973.464ENSOANG00000008577CPSF37273.464Ornithorhynchus_anatinus
ENSTRUG00000013905CPSF39972.973ENSOCUG00000003728CPSF35972.973Oryctolagus_cuniculus
ENSTRUG00000013905CPSF39971.111ENSORLG00000018854cpsf35871.111Oryzias_latipes
ENSTRUG00000013905CPSF39971.717ENSORLG00020013331cpsf36271.717Oryzias_latipes_hni
ENSTRUG00000013905CPSF310070.792ENSORLG00015011017cpsf36370.792Oryzias_latipes_hsok
ENSTRUG00000013905CPSF39971.675ENSOMEG00000010647cpsf35671.675Oryzias_melastigma
ENSTRUG00000013905CPSF39963.636ENSOGAG00000001680CPSF35963.636Otolemur_garnettii
ENSTRUG00000013905CPSF39973.219ENSOARG00000015073CPSF35973.219Ovis_aries
ENSTRUG00000013905CPSF39973.219ENSPPAG00000042457CPSF35973.219Pan_paniscus
ENSTRUG00000013905CPSF39972.346ENSPPRG00000016790CPSF36272.727Panthera_pardus
ENSTRUG00000013905CPSF39972.346ENSPTIG00000003920CPSF36472.727Panthera_tigris_altaica
ENSTRUG00000013905CPSF39973.219ENSPTRG00000011638CPSF35973.219Pan_troglodytes
ENSTRUG00000013905CPSF39972.973ENSPANG00000016798CPSF35972.973Papio_anubis
ENSTRUG00000013905CPSF310076.543ENSPKIG00000023646cpsf36476.543Paramormyrops_kingsleyae
ENSTRUG00000013905CPSF39972.727ENSPSIG00000016144CPSF35972.727Pelodiscus_sinensis
ENSTRUG00000013905CPSF310077.612ENSPMGG00000015311CPSF310077.612Periophthalmus_magnuspinnatus
ENSTRUG00000013905CPSF38377.477ENSPMGG00000006141-6068.101Periophthalmus_magnuspinnatus
ENSTRUG00000013905CPSF39972.346ENSPEMG00000017668Cpsf35972.727Peromyscus_maniculatus_bairdii
ENSTRUG00000013905CPSF39972.346ENSPCIG00000009823CPSF36072.727Phascolarctos_cinereus
ENSTRUG00000013905CPSF310077.833ENSPFOG00000010418-5977.833Poecilia_formosa
ENSTRUG00000013905CPSF39971.712ENSPFOG00000015922cpsf35871.712Poecilia_formosa
ENSTRUG00000013905CPSF310077.833ENSPLAG00000021300-10077.833Poecilia_latipinna
ENSTRUG00000013905CPSF39971.712ENSPLAG00000000882cpsf35871.712Poecilia_latipinna
ENSTRUG00000013905CPSF39971.712ENSPMEG00000018309cpsf35871.712Poecilia_mexicana
ENSTRUG00000013905CPSF36791.020ENSPMEG00000021555CPSF39691.020Poecilia_mexicana
ENSTRUG00000013905CPSF310075.266ENSPREG00000004482CPSF35675.266Poecilia_reticulata
ENSTRUG00000013905CPSF39972.431ENSPREG00000014875cpsf36372.431Poecilia_reticulata
ENSTRUG00000013905CPSF39972.973ENSPPYG00000012666CPSF36272.973Pongo_abelii
ENSTRUG00000013905CPSF39973.529ENSPVAG00000005324CPSF35973.529Pteropus_vampyrus
ENSTRUG00000013905CPSF39973.183ENSPNYG00000004405cpsf36373.183Pundamilia_nyererei
ENSTRUG00000013905CPSF37884.277ENSPNYG00000021047CPSF35384.277Pundamilia_nyererei
ENSTRUG00000013905CPSF310073.645ENSPNAG00000023060cpsf36473.645Pygocentrus_nattereri
ENSTRUG00000013905CPSF310072.087ENSRNOG00000052418Cpsf35972.087Rattus_norvegicus
ENSTRUG00000013905CPSF39969.720ENSRBIG00000041615CPSF36169.720Rhinopithecus_bieti
ENSTRUG00000013905CPSF39973.219ENSRROG00000033792CPSF35973.219Rhinopithecus_roxellana
ENSTRUG00000013905CPSF39968.049ENSSBOG00000027263CPSF35968.049Saimiri_boliviensis_boliviensis
ENSTRUG00000013905CPSF39972.973ENSSHAG00000007024CPSF35972.973Sarcophilus_harrisii
ENSTRUG00000013905CPSF310076.601ENSSFOG00015002108cpsf36476.601Scleropages_formosus
ENSTRUG00000013905CPSF39178.788ENSSMAG00000020534CPSF35478.788Scophthalmus_maximus
ENSTRUG00000013905CPSF310080.000ENSSDUG00000018498CPSF36480.000Seriola_dumerili
ENSTRUG00000013905CPSF39973.086ENSSDUG00000002828cpsf35773.086Seriola_dumerili
ENSTRUG00000013905CPSF310079.310ENSSLDG00000005234CPSF36379.208Seriola_lalandi_dorsalis
ENSTRUG00000013905CPSF39973.333ENSSLDG00000008469cpsf35773.333Seriola_lalandi_dorsalis
ENSTRUG00000013905CPSF39971.182ENSSPUG00000015525CPSF35971.182Sphenodon_punctatus
ENSTRUG00000013905CPSF310080.100ENSSPAG00000002906CPSF36380.100Stegastes_partitus
ENSTRUG00000013905CPSF39973.333ENSSPAG00000018579cpsf35873.333Stegastes_partitus
ENSTRUG00000013905CPSF39972.727ENSSSCG00000020799CPSF36472.727Sus_scrofa
ENSTRUG00000013905CPSF39972.482ENSTGUG00000013016CPSF35972.482Taeniopygia_guttata
ENSTRUG00000013905CPSF39173.867ENSUAMG00000007535CPSF35473.867Ursus_americanus
ENSTRUG00000013905CPSF39973.219ENSUMAG00000003676CPSF36273.219Ursus_maritimus
ENSTRUG00000013905CPSF39172.386ENSVPAG00000008041CPSF35972.386Vicugna_pacos
ENSTRUG00000013905CPSF39973.219ENSVVUG00000002194CPSF35973.219Vulpes_vulpes
ENSTRUG00000013905CPSF39970.516ENSXETG00000008263cpsf35970.516Xenopus_tropicalis
ENSTRUG00000013905CPSF39175.871ENSXCOG00000000957-8775.871Xiphophorus_couchianus
ENSTRUG00000013905CPSF39971.571ENSXCOG00000019695cpsf35871.571Xiphophorus_couchianus
ENSTRUG00000013905CPSF39971.287ENSXMAG00000009784cpsf36271.287Xiphophorus_maculatus
ENSTRUG00000013905CPSF310077.833ENSXMAG00000027291CPSF35977.833Xiphophorus_maculatus

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