EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000014956 (Gene tree)
Gene ID: 101074074
Gene Symbol: snrpf
Alias: snrpfl
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 977 bases
Position: chr18:3013214-3014190
Accession: 101074074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000038228	LSM	PF01423.22	3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000038365	-	210	XM_011613256	ENSTRUP00000038228	69 (aa)	XP_011611558	H2UMQ7

Gene Model

Click here to download ENSTRUG00000014956's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000014956's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000014956	snrpf	80	50.909	ENSTRUG00000023398	lsm6	69	50.909

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000014956	snrpf	84	94.828	ENSG00000139343	SNRPF	67	94.828	Homo_sapiens
ENSTRUG00000014956	snrpf	100	98.551	ENSAPOG00000003377	snrpf	54	98.551	Acanthochromis_polyacanthus
ENSTRUG00000014956	snrpf	86	79.661	ENSAMEG00000018718	-	67	81.034	Ailuropoda_melanoleuca
ENSTRUG00000014956	snrpf	84	94.828	ENSAMEG00000002166	-	68	94.828	Ailuropoda_melanoleuca
ENSTRUG00000014956	snrpf	100	98.551	ENSACIG00000013216	snrpf	81	98.551	Amphilophus_citrinellus
ENSTRUG00000014956	snrpf	100	98.551	ENSAOCG00000015108	snrpf	81	98.551	Amphiprion_ocellaris
ENSTRUG00000014956	snrpf	100	98.551	ENSAPEG00000022022	snrpf	81	98.551	Amphiprion_percula
ENSTRUG00000014956	snrpf	100	98.551	ENSATEG00000022625	snrpf	74	98.551	Anabas_testudineus
ENSTRUG00000014956	snrpf	84	93.103	ENSACAG00000014073	SNRPF	67	93.103	Anolis_carolinensis
ENSTRUG00000014956	snrpf	84	94.828	ENSANAG00000032845	SNRPF	67	94.828	Aotus_nancymaae
ENSTRUG00000014956	snrpf	84	86.207	ENSANAG00000020297	-	53	86.207	Aotus_nancymaae
ENSTRUG00000014956	snrpf	83	64.912	ENSANAG00000025860	-	60	64.912	Aotus_nancymaae
ENSTRUG00000014956	snrpf	100	98.551	ENSACLG00000016066	snrpf	81	98.551	Astatotilapia_calliptera
ENSTRUG00000014956	snrpf	84	94.828	ENSAMXG00000007421	snrpf	67	94.828	Astyanax_mexicanus
ENSTRUG00000014956	snrpf	88	90.164	ENSBTAG00000050012	-	72	89.655	Bos_taurus
ENSTRUG00000014956	snrpf	84	94.828	ENSBTAG00000016271	SNRPF	67	94.828	Bos_taurus
ENSTRUG00000014956	snrpf	90	67.742	WBGene00004918	snr-5	67	70.175	Caenorhabditis_elegans
ENSTRUG00000014956	snrpf	84	94.828	ENSCJAG00000002705	-	67	94.828	Callithrix_jacchus
ENSTRUG00000014956	snrpf	84	94.828	ENSCAFG00000006395	-	52	94.828	Canis_familiaris
ENSTRUG00000014956	snrpf	81	89.286	ENSCAFG00000031151	-	67	89.655	Canis_familiaris
ENSTRUG00000014956	snrpf	96	81.818	ENSCAFG00020013161	-	62	91.379	Canis_lupus_dingo
ENSTRUG00000014956	snrpf	81	89.286	ENSCAFG00020010823	-	67	89.655	Canis_lupus_dingo
ENSTRUG00000014956	snrpf	84	89.831	ENSTSYG00000036502	-	67	89.831	Carlito_syrichta
ENSTRUG00000014956	snrpf	84	81.034	ENSTSYG00000030635	-	66	81.034	Carlito_syrichta
ENSTRUG00000014956	snrpf	84	94.828	ENSCAPG00000007242	SNRPF	68	94.828	Cavia_aperea
ENSTRUG00000014956	snrpf	84	94.828	ENSCPOG00000013898	SNRPF	67	94.828	Cavia_porcellus
ENSTRUG00000014956	snrpf	100	94.203	ENSCCAG00000017356	-	67	94.828	Cebus_capucinus
ENSTRUG00000014956	snrpf	84	94.828	ENSCCAG00000037378	-	67	94.828	Cebus_capucinus
ENSTRUG00000014956	snrpf	84	94.828	ENSCLAG00000007200	SNRPF	67	94.828	Chinchilla_lanigera
ENSTRUG00000014956	snrpf	68	93.617	ENSCHOG00000009392	SNRPF	73	93.617	Choloepus_hoffmanni
ENSTRUG00000014956	snrpf	99	85.294	ENSCPBG00000001985	-	68	87.719	Chrysemys_picta_bellii
ENSTRUG00000014956	snrpf	84	86.207	ENSCPBG00000006227	-	67	86.207	Chrysemys_picta_bellii
ENSTRUG00000014956	snrpf	100	84.058	ENSCPBG00000026463	-	67	84.483	Chrysemys_picta_bellii
ENSTRUG00000014956	snrpf	100	88.406	ENSCSAVG00000007498	-	66	91.379	Ciona_savignyi
ENSTRUG00000014956	snrpf	84	94.828	ENSCGRG00001017100	-	67	94.828	Cricetulus_griseus_chok1gshd
ENSTRUG00000014956	snrpf	91	87.302	ENSCGRG00000018878	-	72	86.207	Cricetulus_griseus_crigri
ENSTRUG00000014956	snrpf	84	94.828	ENSCGRG00000000336	-	67	94.828	Cricetulus_griseus_crigri
ENSTRUG00000014956	snrpf	100	97.101	ENSCSEG00000004748	snrpf	80	97.101	Cynoglossus_semilaevis
ENSTRUG00000014956	snrpf	100	98.551	ENSCVAG00000000397	snrpf	55	98.551	Cyprinodon_variegatus
ENSTRUG00000014956	snrpf	100	95.775	ENSDARG00000105037	snrpf	81	95.775	Danio_rerio
ENSTRUG00000014956	snrpf	84	93.103	ENSDNOG00000048989	-	52	93.103	Dasypus_novemcinctus
ENSTRUG00000014956	snrpf	84	79.310	ENSDNOG00000049373	-	50	79.310	Dasypus_novemcinctus
ENSTRUG00000014956	snrpf	80	85.455	ENSDORG00000025351	-	76	85.455	Dipodomys_ordii
ENSTRUG00000014956	snrpf	84	93.103	ENSDORG00000029740	-	71	93.103	Dipodomys_ordii
ENSTRUG00000014956	snrpf	100	75.362	FBgn0000426	SmF	66	79.310	Drosophila_melanogaster
ENSTRUG00000014956	snrpf	84	94.828	ENSETEG00000001558	-	67	94.828	Echinops_telfairi
ENSTRUG00000014956	snrpf	100	73.913	ENSEBUG00000001793	-	58	87.037	Eptatretus_burgeri
ENSTRUG00000014956	snrpf	84	94.828	ENSEEUG00000013509	SNRPF	68	94.828	Erinaceus_europaeus
ENSTRUG00000014956	snrpf	100	91.304	ENSELUG00000007737	RUXF	67	93.103	Esox_lucius
ENSTRUG00000014956	snrpf	84	94.828	ENSELUG00000003121	RUXF	67	94.828	Esox_lucius
ENSTRUG00000014956	snrpf	97	71.642	ENSFCAG00000031148	-	56	68.852	Felis_catus
ENSTRUG00000014956	snrpf	84	70.690	ENSFCAG00000021942	-	66	70.690	Felis_catus
ENSTRUG00000014956	snrpf	84	94.828	ENSFCAG00000029966	-	67	94.828	Felis_catus
ENSTRUG00000014956	snrpf	84	94.828	ENSFALG00000010799	SNRPF	67	94.828	Ficedula_albicollis
ENSTRUG00000014956	snrpf	84	94.828	ENSFDAG00000002831	-	67	94.828	Fukomys_damarensis
ENSTRUG00000014956	snrpf	100	98.551	ENSFHEG00000003240	snrpf	61	98.551	Fundulus_heteroclitus
ENSTRUG00000014956	snrpf	100	98.551	ENSGMOG00000007741	snrpf	81	98.551	Gadus_morhua
ENSTRUG00000014956	snrpf	84	94.828	ENSGALG00000011409	SNRPF	67	94.828	Gallus_gallus
ENSTRUG00000014956	snrpf	100	98.551	ENSGAFG00000016187	snrpf	79	98.551	Gambusia_affinis
ENSTRUG00000014956	snrpf	100	97.101	ENSGACG00000020055	snrpf	81	97.101	Gasterosteus_aculeatus
ENSTRUG00000014956	snrpf	100	88.406	ENSGAGG00000012945	-	53	91.379	Gopherus_agassizii
ENSTRUG00000014956	snrpf	99	86.765	ENSGAGG00000022991	-	67	89.474	Gopherus_agassizii
ENSTRUG00000014956	snrpf	74	82.353	ENSGAGG00000014132	-	61	82.353	Gopherus_agassizii
ENSTRUG00000014956	snrpf	87	86.667	ENSGAGG00000011163	-	86	89.796	Gopherus_agassizii
ENSTRUG00000014956	snrpf	74	86.275	ENSGGOG00000039564	-	63	85.106	Gorilla_gorilla
ENSTRUG00000014956	snrpf	84	94.828	ENSGGOG00000001127	-	68	94.828	Gorilla_gorilla
ENSTRUG00000014956	snrpf	78	92.593	ENSGGOG00000039936	-	58	91.111	Gorilla_gorilla
ENSTRUG00000014956	snrpf	84	94.828	ENSHGLG00000009108	SNRPF	67	94.828	Heterocephalus_glaber_female
ENSTRUG00000014956	snrpf	84	93.103	ENSHGLG00000021172	-	67	93.103	Heterocephalus_glaber_female
ENSTRUG00000014956	snrpf	84	94.828	ENSHGLG00100008103	-	68	94.828	Heterocephalus_glaber_male
ENSTRUG00000014956	snrpf	84	93.103	ENSHGLG00100019596	-	67	93.103	Heterocephalus_glaber_male
ENSTRUG00000014956	snrpf	100	98.551	ENSIPUG00000018994	snrpf	81	98.551	Ictalurus_punctatus
ENSTRUG00000014956	snrpf	84	94.828	ENSSTOG00000010434	-	67	94.828	Ictidomys_tridecemlineatus
ENSTRUG00000014956	snrpf	84	94.828	ENSJJAG00000011272	-	67	94.828	Jaculus_jaculus
ENSTRUG00000014956	snrpf	100	79.710	ENSJJAG00000010502	-	69	81.034	Jaculus_jaculus
ENSTRUG00000014956	snrpf	97	91.045	ENSJJAG00000004828	-	86	92.857	Jaculus_jaculus
ENSTRUG00000014956	snrpf	99	77.941	ENSJJAG00000004558	-	68	78.947	Jaculus_jaculus
ENSTRUG00000014956	snrpf	100	98.551	ENSKMAG00000013566	snrpf	80	98.551	Kryptolebias_marmoratus
ENSTRUG00000014956	snrpf	100	100.000	ENSLBEG00000008800	snrpf	80	100.000	Labrus_bergylta
ENSTRUG00000014956	snrpf	84	94.828	ENSLACG00000002456	-	50	94.828	Latimeria_chalumnae
ENSTRUG00000014956	snrpf	84	94.828	ENSLOCG00000015744	snrpf	67	94.828	Lepisosteus_oculatus
ENSTRUG00000014956	snrpf	84	94.828	ENSLAFG00000017426	SNRPF	67	94.828	Loxodonta_africana
ENSTRUG00000014956	snrpf	100	100.000	ENSMAMG00000016593	snrpf	81	100.000	Mastacembelus_armatus
ENSTRUG00000014956	snrpf	100	98.551	ENSMZEG00005014701	snrpf	81	98.551	Maylandia_zebra
ENSTRUG00000014956	snrpf	84	94.828	ENSMGAG00000011453	-	52	94.828	Meleagris_gallopavo
ENSTRUG00000014956	snrpf	84	89.655	ENSMAUG00000008799	-	67	89.655	Mesocricetus_auratus
ENSTRUG00000014956	snrpf	84	94.828	ENSMAUG00000016909	-	78	94.828	Mesocricetus_auratus
ENSTRUG00000014956	snrpf	84	94.828	ENSMAUG00000019737	-	78	94.828	Mesocricetus_auratus
ENSTRUG00000014956	snrpf	88	88.525	ENSMAUG00000010289	-	66	92.000	Mesocricetus_auratus
ENSTRUG00000014956	snrpf	84	94.828	ENSMICG00000012153	-	67	94.828	Microcebus_murinus
ENSTRUG00000014956	snrpf	83	82.456	ENSMOCG00000022166	-	62	82.456	Microtus_ochrogaster
ENSTRUG00000014956	snrpf	84	81.034	ENSMOCG00000020220	-	74	81.034	Microtus_ochrogaster
ENSTRUG00000014956	snrpf	84	94.828	ENSMOCG00000020437	Snrpf	67	94.828	Microtus_ochrogaster
ENSTRUG00000014956	snrpf	100	97.101	ENSMMOG00000007127	snrpf	81	97.101	Mola_mola
ENSTRUG00000014956	snrpf	84	94.828	ENSMODG00000008091	SNRPF	51	94.828	Monodelphis_domestica
ENSTRUG00000014956	snrpf	100	98.551	ENSMALG00000012328	snrpf	81	98.551	Monopterus_albus
ENSTRUG00000014956	snrpf	84	94.828	MGP_CAROLIEiJ_G0015735	-	67	94.828	Mus_caroli
ENSTRUG00000014956	snrpf	84	94.828	ENSMUSG00000020018	Snrpf	67	94.828	Mus_musculus
ENSTRUG00000014956	snrpf	84	94.828	MGP_PahariEiJ_G0031350	Snrpf	67	94.828	Mus_pahari
ENSTRUG00000014956	snrpf	84	94.828	MGP_SPRETEiJ_G0016553	Snrpf	67	94.828	Mus_spretus
ENSTRUG00000014956	snrpf	84	94.828	ENSMPUG00000007176	-	52	94.828	Mustela_putorius_furo
ENSTRUG00000014956	snrpf	99	75.000	ENSMLUG00000026269	-	54	71.930	Myotis_lucifugus
ENSTRUG00000014956	snrpf	84	94.828	ENSMLUG00000027932	-	55	94.828	Myotis_lucifugus
ENSTRUG00000014956	snrpf	84	94.828	ENSMLUG00000029201	-	55	94.828	Myotis_lucifugus
ENSTRUG00000014956	snrpf	84	94.828	ENSMLUG00000013577	-	68	94.828	Myotis_lucifugus
ENSTRUG00000014956	snrpf	84	94.828	ENSMLUG00000026149	-	55	94.828	Myotis_lucifugus
ENSTRUG00000014956	snrpf	88	88.525	ENSNGAG00000005851	-	68	87.931	Nannospalax_galili
ENSTRUG00000014956	snrpf	84	94.828	ENSNGAG00000024292	-	67	94.828	Nannospalax_galili
ENSTRUG00000014956	snrpf	100	98.551	ENSNBRG00000011682	snrpf	70	98.551	Neolamprologus_brichardi
ENSTRUG00000014956	snrpf	84	62.069	ENSMEUG00000000671	SNRPF	68	62.069	Notamacropus_eugenii
ENSTRUG00000014956	snrpf	84	94.828	ENSODEG00000010328	-	68	94.828	Octodon_degus
ENSTRUG00000014956	snrpf	84	94.828	ENSOCUG00000010925	SNRPF	51	94.828	Oryctolagus_cuniculus
ENSTRUG00000014956	snrpf	84	94.828	ENSORLG00020008216	snrpf	68	94.828	Oryzias_latipes_hni
ENSTRUG00000014956	snrpf	84	94.828	ENSORLG00015007418	snrpf	68	94.828	Oryzias_latipes_hsok
ENSTRUG00000014956	snrpf	100	97.101	ENSOMEG00000003018	snrpf	81	97.101	Oryzias_melastigma
ENSTRUG00000014956	snrpf	84	93.103	ENSOGAG00000030323	-	67	93.103	Otolemur_garnettii
ENSTRUG00000014956	snrpf	84	94.828	ENSOARG00000011853	-	50	94.828	Ovis_aries
ENSTRUG00000014956	snrpf	90	77.419	ENSPPAG00000037479	-	68	75.862	Pan_paniscus
ENSTRUG00000014956	snrpf	86	88.136	ENSPPAG00000037544	-	58	93.333	Pan_paniscus
ENSTRUG00000014956	snrpf	84	94.828	ENSPPRG00000005875	-	67	94.828	Panthera_pardus
ENSTRUG00000014956	snrpf	97	70.149	ENSPPRG00000007449	-	59	68.966	Panthera_pardus
ENSTRUG00000014956	snrpf	84	94.828	ENSPTIG00000007520	SNRPF	67	94.828	Panthera_tigris_altaica
ENSTRUG00000014956	snrpf	97	73.134	ENSPTIG00000005117	-	69	68.966	Panthera_tigris_altaica
ENSTRUG00000014956	snrpf	86	88.136	ENSPTRG00000043814	-	58	93.333	Pan_troglodytes
ENSTRUG00000014956	snrpf	90	75.806	ENSPTRG00000047717	-	68	74.138	Pan_troglodytes
ENSTRUG00000014956	snrpf	100	98.551	ENSPKIG00000014784	snrpf	76	98.551	Paramormyrops_kingsleyae
ENSTRUG00000014956	snrpf	84	94.828	ENSPSIG00000016462	SNRPF	67	94.828	Pelodiscus_sinensis
ENSTRUG00000014956	snrpf	100	97.101	ENSPMGG00000023548	snrpf	81	97.101	Periophthalmus_magnuspinnatus
ENSTRUG00000014956	snrpf	84	94.828	ENSPEMG00000023326	Snrpf	67	94.828	Peromyscus_maniculatus_bairdii
ENSTRUG00000014956	snrpf	100	98.551	ENSPLAG00000023932	snrpf	81	98.551	Poecilia_latipinna
ENSTRUG00000014956	snrpf	100	98.551	ENSPMEG00000003377	snrpf	81	98.551	Poecilia_mexicana
ENSTRUG00000014956	snrpf	100	98.551	ENSPREG00000022635	snrpf	79	98.551	Poecilia_reticulata
ENSTRUG00000014956	snrpf	84	94.828	ENSPPYG00000004847	-	67	94.828	Pongo_abelii
ENSTRUG00000014956	snrpf	84	94.828	ENSPCOG00000023833	-	67	94.828	Propithecus_coquereli
ENSTRUG00000014956	snrpf	84	94.828	ENSPVAG00000009036	SNRPF	67	94.828	Pteropus_vampyrus
ENSTRUG00000014956	snrpf	100	98.551	ENSPNYG00000021712	snrpf	81	98.551	Pundamilia_nyererei
ENSTRUG00000014956	snrpf	100	97.101	ENSPNAG00000019117	snrpf	81	97.101	Pygocentrus_nattereri
ENSTRUG00000014956	snrpf	84	94.828	ENSRNOG00000005556	Snrpf	67	94.828	Rattus_norvegicus
ENSTRUG00000014956	snrpf	84	91.379	ENSRBIG00000030414	-	67	91.379	Rhinopithecus_bieti
ENSTRUG00000014956	snrpf	84	91.379	ENSRROG00000021975	-	67	91.379	Rhinopithecus_roxellana
ENSTRUG00000014956	snrpf	80	62.500	YPR182W	SMX3	65	62.500	Saccharomyces_cerevisiae
ENSTRUG00000014956	snrpf	84	94.828	ENSSBOG00000036179	-	67	94.828	Saimiri_boliviensis_boliviensis
ENSTRUG00000014956	snrpf	84	77.586	ENSSBOG00000032297	-	64	77.586	Saimiri_boliviensis_boliviensis
ENSTRUG00000014956	snrpf	88	75.410	ENSSBOG00000027638	-	70	75.410	Saimiri_boliviensis_boliviensis
ENSTRUG00000014956	snrpf	84	94.828	ENSSBOG00000012868	-	67	94.828	Saimiri_boliviensis_boliviensis
ENSTRUG00000014956	snrpf	84	94.828	ENSSHAG00000012294	SNRPF	52	94.828	Sarcophilus_harrisii
ENSTRUG00000014956	snrpf	70	97.917	ENSSFOG00015021523	snrpf	72	97.917	Scleropages_formosus
ENSTRUG00000014956	snrpf	100	97.101	ENSSMAG00000005533	snrpf	79	97.101	Scophthalmus_maximus
ENSTRUG00000014956	snrpf	70	97.917	ENSSDUG00000016283	snrpf	57	97.917	Seriola_dumerili
ENSTRUG00000014956	snrpf	93	70.312	ENSSLDG00000003885	-	71	74.138	Seriola_lalandi_dorsalis
ENSTRUG00000014956	snrpf	100	98.551	ENSSLDG00000005119	snrpf	80	98.551	Seriola_lalandi_dorsalis
ENSTRUG00000014956	snrpf	84	94.828	ENSSPUG00000014590	-	68	94.828	Sphenodon_punctatus
ENSTRUG00000014956	snrpf	100	98.551	ENSSPAG00000003283	snrpf	78	98.551	Stegastes_partitus
ENSTRUG00000014956	snrpf	84	94.828	ENSSSCG00000000895	SNRPF	67	94.828	Sus_scrofa
ENSTRUG00000014956	snrpf	100	100.000	ENSTNIG00000012672	snrpf	80	100.000	Tetraodon_nigroviridis
ENSTRUG00000014956	snrpf	84	62.069	ENSTTRG00000006070	SNRPF	67	62.069	Tursiops_truncatus
ENSTRUG00000014956	snrpf	84	94.828	ENSUAMG00000008176	-	67	94.828	Ursus_americanus
ENSTRUG00000014956	snrpf	100	82.609	ENSUAMG00000001101	-	68	84.483	Ursus_americanus
ENSTRUG00000014956	snrpf	84	84.483	ENSUMAG00000006177	-	68	84.483	Ursus_maritimus
ENSTRUG00000014956	snrpf	84	94.828	ENSUMAG00000003528	-	67	94.828	Ursus_maritimus
ENSTRUG00000014956	snrpf	84	94.828	ENSVPAG00000008712	-	67	94.828	Vicugna_pacos
ENSTRUG00000014956	snrpf	88	85.246	ENSVVUG00000023821	-	74	84.483	Vulpes_vulpes
ENSTRUG00000014956	snrpf	84	65.000	ENSXETG00000021630	snrpf	69	65.000	Xenopus_tropicalis
ENSTRUG00000014956	snrpf	100	98.551	ENSXCOG00000013860	snrpf	79	98.551	Xiphophorus_couchianus
ENSTRUG00000014956	snrpf	100	98.551	ENSXMAG00000015448	snrpf	81	98.551	Xiphophorus_maculatus