EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000015265 (Gene tree)
Gene ID: 101078515
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 16854 bases
Position: chr1:12219678-12236531
Accession: 101078515
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000039005	CMS1	PF14617.6	2e-33	1	1
ENSTRUP00000053049	CMS1	PF14617.6	3.3e-33	1	1
ENSTRUP00000039005	DEAD	PF00270.29	2.2e-08	1	1
ENSTRUP00000053049	DEAD	PF00270.29	2.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000039145	-	1315	-	ENSTRUP00000039005	282 (aa)	-	H2UPY4
ENSTRUT00000057138	-	1543	XM_011608799	ENSTRUP00000053049	296 (aa)	XP_011607101	-

Gene Model

Click here to download ENSTRUG00000015265's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000015265's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000015265	cmss1	100	51.408	ENSG00000184220	CMSS1	98	63.750	Homo_sapiens
ENSTRUG00000015265	cmss1	72	84.729	ENSAPOG00000010604	cmss1	93	75.397	Acanthochromis_polyacanthus
ENSTRUG00000015265	cmss1	72	61.084	ENSAMEG00000004092	CMSS1	78	61.084	Ailuropoda_melanoleuca
ENSTRUG00000015265	cmss1	79	70.721	ENSACIG00000021854	cmss1	96	67.323	Amphilophus_citrinellus
ENSTRUG00000015265	cmss1	100	71.626	ENSAOCG00000013361	cmss1	100	73.356	Amphiprion_ocellaris
ENSTRUG00000015265	cmss1	100	70.345	ENSAPEG00000005829	cmss1	100	74.138	Amphiprion_percula
ENSTRUG00000015265	cmss1	100	68.512	ENSATEG00000008209	cmss1	100	69.550	Anabas_testudineus
ENSTRUG00000015265	cmss1	72	63.366	ENSAPLG00000010542	CMSS1	88	63.366	Anas_platyrhynchos
ENSTRUG00000015265	cmss1	95	54.815	ENSACAG00000011065	CMSS1	74	62.871	Anolis_carolinensis
ENSTRUG00000015265	cmss1	100	50.704	ENSANAG00000023565	CMSS1	100	49.296	Aotus_nancymaae
ENSTRUG00000015265	cmss1	100	65.552	ENSACLG00000027294	cmss1	100	70.307	Astatotilapia_calliptera
ENSTRUG00000015265	cmss1	100	57.823	ENSAMXG00000002046	cmss1	100	59.864	Astyanax_mexicanus
ENSTRUG00000015265	cmss1	100	49.645	ENSBTAG00000013663	CMSS1	100	46.382	Bos_taurus
ENSTRUG00000015265	cmss1	100	50.352	ENSCJAG00000000610	CMSS1	100	50.000	Callithrix_jacchus
ENSTRUG00000015265	cmss1	72	62.376	ENSCAFG00000009230	CMSS1	73	62.376	Canis_familiaris
ENSTRUG00000015265	cmss1	72	62.376	ENSCAFG00020009464	-	74	62.376	Canis_lupus_dingo
ENSTRUG00000015265	cmss1	72	61.386	ENSCAFG00020024156	-	63	61.386	Canis_lupus_dingo
ENSTRUG00000015265	cmss1	72	61.386	ENSCHIG00000013003	CMSS1	73	61.386	Capra_hircus
ENSTRUG00000015265	cmss1	86	55.967	ENSTSYG00000009266	CMSS1	78	60.891	Carlito_syrichta
ENSTRUG00000015265	cmss1	67	54.497	ENSCAPG00000013584	CMSS1	88	54.497	Cavia_aperea
ENSTRUG00000015265	cmss1	100	52.817	ENSCPOG00000014680	CMSS1	100	53.472	Cavia_porcellus
ENSTRUG00000015265	cmss1	100	52.465	ENSCCAG00000034685	CMSS1	100	51.056	Cebus_capucinus
ENSTRUG00000015265	cmss1	100	50.355	ENSCATG00000031980	CMSS1	100	49.662	Cercocebus_atys
ENSTRUG00000015265	cmss1	71	61.000	ENSCLAG00000011241	CMSS1	87	61.386	Chinchilla_lanigera
ENSTRUG00000015265	cmss1	72	61.881	ENSCSAG00000006024	CMSS1	82	61.881	Chlorocebus_sabaeus
ENSTRUG00000015265	cmss1	100	38.832	ENSCHOG00000012098	CMSS1	100	38.488	Choloepus_hoffmanni
ENSTRUG00000015265	cmss1	68	43.878	ENSCING00000014848	-	99	43.850	Ciona_intestinalis
ENSTRUG00000015265	cmss1	100	52.632	ENSCANG00000031337	CMSS1	100	51.930	Colobus_angolensis_palliatus
ENSTRUG00000015265	cmss1	100	49.470	ENSCGRG00001014305	Cmss1	100	48.123	Cricetulus_griseus_chok1gshd
ENSTRUG00000015265	cmss1	72	58.911	ENSCGRG00000006722	Cmss1	79	58.911	Cricetulus_griseus_crigri
ENSTRUG00000015265	cmss1	100	67.347	ENSCSEG00000004958	cmss1	100	64.626	Cynoglossus_semilaevis
ENSTRUG00000015265	cmss1	100	68.403	ENSCVAG00000005039	cmss1	100	68.056	Cyprinodon_variegatus
ENSTRUG00000015265	cmss1	100	59.589	ENSDARG00000112579	cmss1	100	59.932	Danio_rerio
ENSTRUG00000015265	cmss1	72	61.881	ENSDNOG00000040418	CMSS1	73	61.881	Dasypus_novemcinctus
ENSTRUG00000015265	cmss1	100	51.408	ENSDORG00000010461	Cmss1	100	50.340	Dipodomys_ordii
ENSTRUG00000015265	cmss1	71	60.500	ENSEASG00005010966	CMSS1	92	60.891	Equus_asinus_asinus
ENSTRUG00000015265	cmss1	71	60.500	ENSECAG00000015662	CMSS1	89	60.891	Equus_caballus
ENSTRUG00000015265	cmss1	71	42.500	ENSEEUG00000007624	-	100	36.486	Erinaceus_europaeus
ENSTRUG00000015265	cmss1	100	56.393	ENSELUG00000019459	cmss1	100	59.333	Esox_lucius
ENSTRUG00000015265	cmss1	100	52.465	ENSFCAG00000044577	CMSS1	100	51.761	Felis_catus
ENSTRUG00000015265	cmss1	72	62.871	ENSFALG00000005816	CMSS1	85	62.871	Ficedula_albicollis
ENSTRUG00000015265	cmss1	72	61.881	ENSFDAG00000012577	CMSS1	89	61.881	Fukomys_damarensis
ENSTRUG00000015265	cmss1	82	72.845	ENSFHEG00000012008	cmss1	84	76.847	Fundulus_heteroclitus
ENSTRUG00000015265	cmss1	99	61.649	ENSGMOG00000016729	cmss1	100	63.636	Gadus_morhua
ENSTRUG00000015265	cmss1	94	54.135	ENSGALG00000015267	CMSS1	77	63.366	Gallus_gallus
ENSTRUG00000015265	cmss1	73	77.778	ENSGAFG00000021217	cmss1	99	66.540	Gambusia_affinis
ENSTRUG00000015265	cmss1	99	65.845	ENSGACG00000002798	cmss1	100	65.734	Gasterosteus_aculeatus
ENSTRUG00000015265	cmss1	95	53.214	ENSGAGG00000019861	CMSS1	100	53.333	Gopherus_agassizii
ENSTRUG00000015265	cmss1	72	61.386	ENSGGOG00000014125	CMSS1	77	61.386	Gorilla_gorilla
ENSTRUG00000015265	cmss1	100	65.772	ENSHBUG00000008431	cmss1	100	69.863	Haplochromis_burtoni
ENSTRUG00000015265	cmss1	71	62.000	ENSHGLG00000019481	CMSS1	82	62.376	Heterocephalus_glaber_female
ENSTRUG00000015265	cmss1	71	62.000	ENSHGLG00100010314	CMSS1	81	62.376	Heterocephalus_glaber_male
ENSTRUG00000015265	cmss1	100	63.729	ENSHCOG00000003222	cmss1	100	64.068	Hippocampus_comes
ENSTRUG00000015265	cmss1	100	57.931	ENSIPUG00000011591	cmss1	100	60.068	Ictalurus_punctatus
ENSTRUG00000015265	cmss1	100	51.056	ENSSTOG00000019366	CMSS1	100	50.000	Ictidomys_tridecemlineatus
ENSTRUG00000015265	cmss1	100	50.530	ENSJJAG00000014894	Cmss1	90	60.396	Jaculus_jaculus
ENSTRUG00000015265	cmss1	72	70.443	ENSKMAG00000002390	cmss1	99	60.456	Kryptolebias_marmoratus
ENSTRUG00000015265	cmss1	72	75.980	ENSLBEG00000006298	cmss1	99	64.286	Labrus_bergylta
ENSTRUG00000015265	cmss1	72	65.842	ENSLACG00000009293	CMSS1	88	65.842	Latimeria_chalumnae
ENSTRUG00000015265	cmss1	100	50.704	ENSLOCG00000009391	cmss1	100	51.579	Lepisosteus_oculatus
ENSTRUG00000015265	cmss1	71	61.500	ENSLAFG00000017509	CMSS1	89	61.881	Loxodonta_africana
ENSTRUG00000015265	cmss1	100	52.281	ENSMFAG00000045006	CMSS1	100	51.579	Macaca_fascicularis
ENSTRUG00000015265	cmss1	100	51.930	ENSMMUG00000002939	CMSS1	100	51.228	Macaca_mulatta
ENSTRUG00000015265	cmss1	100	52.281	ENSMNEG00000031315	CMSS1	100	51.579	Macaca_nemestrina
ENSTRUG00000015265	cmss1	100	52.281	ENSMLEG00000033660	CMSS1	100	51.579	Mandrillus_leucophaeus
ENSTRUG00000015265	cmss1	100	71.724	ENSMAMG00000017176	cmss1	100	73.448	Mastacembelus_armatus
ENSTRUG00000015265	cmss1	100	65.552	ENSMZEG00005021886	cmss1	100	70.307	Maylandia_zebra
ENSTRUG00000015265	cmss1	72	63.366	ENSMGAG00000014360	CMSS1	89	63.366	Meleagris_gallopavo
ENSTRUG00000015265	cmss1	100	35.690	ENSMAUG00000020609	Cmss1	100	35.354	Mesocricetus_auratus
ENSTRUG00000015265	cmss1	100	52.113	ENSMICG00000048977	CMSS1	100	50.853	Microcebus_murinus
ENSTRUG00000015265	cmss1	100	50.345	ENSMOCG00000021937	Cmss1	100	50.690	Microtus_ochrogaster
ENSTRUG00000015265	cmss1	92	68.340	ENSMMOG00000019794	cmss1	99	69.349	Mola_mola
ENSTRUG00000015265	cmss1	72	62.871	ENSMODG00000002275	CMSS1	76	62.871	Monodelphis_domestica
ENSTRUG00000015265	cmss1	100	72.509	ENSMALG00000004250	cmss1	100	72.509	Monopterus_albus
ENSTRUG00000015265	cmss1	100	51.724	MGP_CAROLIEiJ_G0020824	Cmss1	100	51.034	Mus_caroli
ENSTRUG00000015265	cmss1	100	51.034	ENSMUSG00000022748	Cmss1	100	50.345	Mus_musculus
ENSTRUG00000015265	cmss1	100	50.690	MGP_PahariEiJ_G0016524	Cmss1	100	50.690	Mus_pahari
ENSTRUG00000015265	cmss1	100	51.379	MGP_SPRETEiJ_G0021724	Cmss1	100	50.345	Mus_spretus
ENSTRUG00000015265	cmss1	71	60.804	ENSMPUG00000011324	CMSS1	78	61.194	Mustela_putorius_furo
ENSTRUG00000015265	cmss1	71	60.396	ENSMLUG00000001131	CMSS1	78	60.784	Myotis_lucifugus
ENSTRUG00000015265	cmss1	100	49.291	ENSNGAG00000020316	Cmss1	100	47.959	Nannospalax_galili
ENSTRUG00000015265	cmss1	100	65.217	ENSNBRG00000003095	cmss1	100	70.307	Neolamprologus_brichardi
ENSTRUG00000015265	cmss1	100	52.113	ENSNLEG00000034172	CMSS1	100	51.408	Nomascus_leucogenys
ENSTRUG00000015265	cmss1	75	51.415	ENSMEUG00000014505	CMSS1	89	51.485	Notamacropus_eugenii
ENSTRUG00000015265	cmss1	100	51.408	ENSOPRG00000002986	CMSS1	100	51.056	Ochotona_princeps
ENSTRUG00000015265	cmss1	100	49.296	ENSODEG00000003558	-	100	47.297	Octodon_degus
ENSTRUG00000015265	cmss1	100	51.773	ENSODEG00000005226	-	100	52.448	Octodon_degus
ENSTRUG00000015265	cmss1	100	44.366	ENSODEG00000009446	-	100	43.662	Octodon_degus
ENSTRUG00000015265	cmss1	100	43.972	ENSODEG00000001853	-	100	43.972	Octodon_degus
ENSTRUG00000015265	cmss1	80	77.434	ENSONIG00000006678	cmss1	97	73.622	Oreochromis_niloticus
ENSTRUG00000015265	cmss1	96	52.222	ENSOANG00000007529	CMSS1	87	62.376	Ornithorhynchus_anatinus
ENSTRUG00000015265	cmss1	72	61.386	ENSOCUG00000025366	CMSS1	73	61.386	Oryctolagus_cuniculus
ENSTRUG00000015265	cmss1	100	68.403	ENSORLG00000020340	cmss1	100	68.070	Oryzias_latipes
ENSTRUG00000015265	cmss1	81	66.376	ENSORLG00020012235	cmss1	94	61.600	Oryzias_latipes_hni
ENSTRUG00000015265	cmss1	89	62.891	ENSORLG00015015551	cmss1	100	61.338	Oryzias_latipes_hsok
ENSTRUG00000015265	cmss1	100	67.010	ENSOMEG00000012555	cmss1	100	67.586	Oryzias_melastigma
ENSTRUG00000015265	cmss1	72	61.386	ENSOGAG00000002045	CMSS1	89	61.386	Otolemur_garnettii
ENSTRUG00000015265	cmss1	72	61.084	ENSOARG00000017899	CMSS1	70	61.084	Ovis_aries
ENSTRUG00000015265	cmss1	97	50.183	ENSPPAG00000038515	CMSS1	74	61.386	Pan_paniscus
ENSTRUG00000015265	cmss1	100	52.465	ENSPPRG00000016767	CMSS1	100	51.761	Panthera_pardus
ENSTRUG00000015265	cmss1	100	52.465	ENSPTIG00000018274	CMSS1	100	51.761	Panthera_tigris_altaica
ENSTRUG00000015265	cmss1	100	51.761	ENSPTRG00000015157	CMSS1	100	51.056	Pan_troglodytes
ENSTRUG00000015265	cmss1	72	61.881	ENSPANG00000019980	CMSS1	80	61.881	Papio_anubis
ENSTRUG00000015265	cmss1	96	57.721	ENSPKIG00000012609	cmss1	99	58.364	Paramormyrops_kingsleyae
ENSTRUG00000015265	cmss1	72	64.356	ENSPSIG00000003849	CMSS1	88	64.356	Pelodiscus_sinensis
ENSTRUG00000015265	cmss1	72	77.941	ENSPMGG00000010286	cmss1	88	77.941	Periophthalmus_magnuspinnatus
ENSTRUG00000015265	cmss1	100	49.492	ENSPEMG00000016384	Cmss1	100	49.831	Peromyscus_maniculatus_bairdii
ENSTRUG00000015265	cmss1	72	50.490	ENSPMAG00000001146	cmss1	99	50.739	Petromyzon_marinus
ENSTRUG00000015265	cmss1	97	52.381	ENSPCIG00000015656	CMSS1	77	62.376	Phascolarctos_cinereus
ENSTRUG00000015265	cmss1	100	66.434	ENSPFOG00000016849	cmss1	100	65.734	Poecilia_formosa
ENSTRUG00000015265	cmss1	100	66.084	ENSPLAG00000008323	cmss1	100	65.385	Poecilia_latipinna
ENSTRUG00000015265	cmss1	100	63.000	ENSPMEG00000021020	cmss1	100	66.552	Poecilia_mexicana
ENSTRUG00000015265	cmss1	89	69.412	ENSPREG00000007618	cmss1	94	64.364	Poecilia_reticulata
ENSTRUG00000015265	cmss1	100	51.408	ENSPPYG00000013606	CMSS1	100	51.056	Pongo_abelii
ENSTRUG00000015265	cmss1	100	51.773	ENSPCOG00000020035	CMSS1	100	50.355	Propithecus_coquereli
ENSTRUG00000015265	cmss1	100	42.908	ENSPVAG00000017031	CMSS1	100	42.553	Pteropus_vampyrus
ENSTRUG00000015265	cmss1	91	65.568	ENSPNYG00000013428	cmss1	97	70.787	Pundamilia_nyererei
ENSTRUG00000015265	cmss1	100	60.135	ENSPNAG00000007912	cmss1	100	58.163	Pygocentrus_nattereri
ENSTRUG00000015265	cmss1	72	60.891	ENSRNOG00000027888	Cmss1	79	60.891	Rattus_norvegicus
ENSTRUG00000015265	cmss1	100	50.352	ENSRBIG00000037931	CMSS1	100	50.877	Rhinopithecus_bieti
ENSTRUG00000015265	cmss1	100	50.352	ENSRROG00000042910	CMSS1	100	50.877	Rhinopithecus_roxellana
ENSTRUG00000015265	cmss1	84	55.882	ENSSBOG00000030980	CMSS1	77	60.891	Saimiri_boliviensis_boliviensis
ENSTRUG00000015265	cmss1	72	63.366	ENSSHAG00000009321	CMSS1	80	63.366	Sarcophilus_harrisii
ENSTRUG00000015265	cmss1	100	60.269	ENSSFOG00015001509	cmss1	100	61.856	Scleropages_formosus
ENSTRUG00000015265	cmss1	100	69.759	ENSSMAG00000001653	cmss1	100	67.354	Scophthalmus_maximus
ENSTRUG00000015265	cmss1	100	76.042	ENSSDUG00000007719	cmss1	100	75.694	Seriola_dumerili
ENSTRUG00000015265	cmss1	73	84.541	ENSSLDG00000012300	cmss1	98	70.042	Seriola_lalandi_dorsalis
ENSTRUG00000015265	cmss1	100	43.706	ENSSARG00000003584	CMSS1	100	41.118	Sorex_araneus
ENSTRUG00000015265	cmss1	72	61.386	ENSSPUG00000003865	CMSS1	89	61.386	Sphenodon_punctatus
ENSTRUG00000015265	cmss1	73	83.981	ENSSPAG00000019182	cmss1	83	68.478	Stegastes_partitus
ENSTRUG00000015265	cmss1	100	48.936	ENSSSCG00000011970	CMSS1	100	48.936	Sus_scrofa
ENSTRUG00000015265	cmss1	72	62.376	ENSTGUG00000013635	CMSS1	88	62.376	Taeniopygia_guttata
ENSTRUG00000015265	cmss1	94	78.229	ENSTNIG00000002880	cmss1	99	77.455	Tetraodon_nigroviridis
ENSTRUG00000015265	cmss1	100	35.689	ENSTBEG00000016722	CMSS1	72	42.574	Tupaia_belangeri
ENSTRUG00000015265	cmss1	100	51.056	ENSTTRG00000001562	CMSS1	100	51.408	Tursiops_truncatus
ENSTRUG00000015265	cmss1	72	61.881	ENSUAMG00000024209	CMSS1	91	61.881	Ursus_americanus
ENSTRUG00000015265	cmss1	72	61.881	ENSUMAG00000001983	CMSS1	78	61.881	Ursus_maritimus
ENSTRUG00000015265	cmss1	57	60.625	ENSVPAG00000000263	CMSS1	57	60.625	Vicugna_pacos
ENSTRUG00000015265	cmss1	71	62.000	ENSVVUG00000021647	-	82	62.376	Vulpes_vulpes
ENSTRUG00000015265	cmss1	72	61.386	ENSVVUG00000007776	-	80	61.386	Vulpes_vulpes
ENSTRUG00000015265	cmss1	100	54.325	ENSXETG00000011858	cmss1	100	52.837	Xenopus_tropicalis
ENSTRUG00000015265	cmss1	74	77.619	ENSXCOG00000018724	cmss1	95	64.388	Xiphophorus_couchianus
ENSTRUG00000015265	cmss1	74	77.619	ENSXMAG00000011243	cmss1	76	78.325	Xiphophorus_maculatus