EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000015489 (Gene tree)
Gene ID: 101080068
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 20615 bases
Position: chr16:1135490-1156104
Accession: 101080068
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000039613	XRN_N	PF03159.18	1.1e-101	1	1
ENSTRUP00000039612	XRN_N	PF03159.18	1.1e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000039753	-	3883	XM_011611801	ENSTRUP00000039612	990 (aa)	XP_011610103	H2URN9
ENSTRUT00000039754	-	3838	XM_011611802	ENSTRUP00000039613	975 (aa)	XP_011610104	H2URP0

Gene Model

Click here to download ENSTRUG00000015489's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03008	Ribosome biogenesis in eukaryotes	KEGG
tru03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000015489's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000015489	xrn2	69	40.177	ENSTRUG00000004895	xrn1	97	37.618

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000015489	xrn2	100	68.586	ENSG00000088930	XRN2	100	68.214	Homo_sapiens
ENSTRUG00000015489	xrn2	98	84.497	ENSAPOG00000009818	xrn2	100	84.359	Acanthochromis_polyacanthus
ENSTRUG00000015489	xrn2	100	68.251	ENSAMEG00000012581	XRN2	100	67.879	Ailuropoda_melanoleuca
ENSTRUG00000015489	xrn2	88	80.405	ENSACIG00000015047	xrn2	95	85.496	Amphilophus_citrinellus
ENSTRUG00000015489	xrn2	95	86.017	ENSAOCG00000023632	xrn2	100	84.359	Amphiprion_ocellaris
ENSTRUG00000015489	xrn2	95	85.699	ENSAPEG00000014871	xrn2	100	84.359	Amphiprion_percula
ENSTRUG00000015489	xrn2	93	87.500	ENSATEG00000001273	xrn2	98	86.029	Anabas_testudineus
ENSTRUG00000015489	xrn2	91	70.490	ENSAPLG00000013869	XRN2	100	67.427	Anas_platyrhynchos
ENSTRUG00000015489	xrn2	100	67.706	ENSACAG00000005565	XRN2	100	67.505	Anolis_carolinensis
ENSTRUG00000015489	xrn2	100	68.485	ENSANAG00000020126	XRN2	100	68.113	Aotus_nancymaae
ENSTRUG00000015489	xrn2	88	85.270	ENSACLG00000010522	xrn2	98	85.270	Astatotilapia_calliptera
ENSTRUG00000015489	xrn2	100	77.268	ENSAMXG00000018301	xrn2	100	76.471	Astyanax_mexicanus
ENSTRUG00000015489	xrn2	100	68.182	ENSBTAG00000011304	XRN2	100	67.810	Bos_taurus
ENSTRUG00000015489	xrn2	84	53.684	WBGene00006964	xrn-2	88	53.403	Caenorhabditis_elegans
ENSTRUG00000015489	xrn2	100	68.586	ENSCJAG00000005611	XRN2	100	68.214	Callithrix_jacchus
ENSTRUG00000015489	xrn2	100	68.352	ENSCAFG00000005185	XRN2	100	67.980	Canis_familiaris
ENSTRUG00000015489	xrn2	100	68.352	ENSCAFG00020027479	XRN2	100	67.980	Canis_lupus_dingo
ENSTRUG00000015489	xrn2	100	68.081	ENSCHIG00000006921	XRN2	100	67.709	Capra_hircus
ENSTRUG00000015489	xrn2	100	68.623	ENSTSYG00000008315	XRN2	100	68.081	Carlito_syrichta
ENSTRUG00000015489	xrn2	97	57.350	ENSCAPG00000010773	XRN2	99	56.360	Cavia_aperea
ENSTRUG00000015489	xrn2	100	68.453	ENSCPOG00000009407	XRN2	100	68.081	Cavia_porcellus
ENSTRUG00000015489	xrn2	100	68.485	ENSCATG00000040350	XRN2	100	68.113	Cercocebus_atys
ENSTRUG00000015489	xrn2	100	68.687	ENSCLAG00000013419	XRN2	100	68.315	Chinchilla_lanigera
ENSTRUG00000015489	xrn2	100	68.485	ENSCSAG00000011094	XRN2	100	68.113	Chlorocebus_sabaeus
ENSTRUG00000015489	xrn2	59	87.097	ENSCHOG00000013404	XRN2	63	87.097	Choloepus_hoffmanni
ENSTRUG00000015489	xrn2	93	71.676	ENSCPBG00000023533	XRN2	100	68.750	Chrysemys_picta_bellii
ENSTRUG00000015489	xrn2	84	59.102	ENSCING00000022336	-	100	60.000	Ciona_intestinalis
ENSTRUG00000015489	xrn2	82	69.767	ENSCSAVG00000011217	-	100	63.218	Ciona_savignyi
ENSTRUG00000015489	xrn2	100	68.485	ENSCANG00000040240	XRN2	100	68.113	Colobus_angolensis_palliatus
ENSTRUG00000015489	xrn2	94	70.978	ENSCGRG00001010676	Xrn2	97	71.663	Cricetulus_griseus_chok1gshd
ENSTRUG00000015489	xrn2	97	67.362	ENSCGRG00000006378	Xrn2	99	67.186	Cricetulus_griseus_crigri
ENSTRUG00000015489	xrn2	52	82.016	ENSCSEG00000005628	xrn2	100	80.830	Cynoglossus_semilaevis
ENSTRUG00000015489	xrn2	88	82.313	ENSCVAG00000018999	xrn2	98	89.484	Cyprinodon_variegatus
ENSTRUG00000015489	xrn2	100	75.794	ENSDARG00000101900	xrn2	96	86.641	Danio_rerio
ENSTRUG00000015489	xrn2	100	67.947	ENSDNOG00000001895	XRN2	100	67.576	Dasypus_novemcinctus
ENSTRUG00000015489	xrn2	100	67.475	ENSDORG00000005434	Xrn2	100	67.003	Dipodomys_ordii
ENSTRUG00000015489	xrn2	84	55.529	FBgn0031868	Rat1	92	54.977	Drosophila_melanogaster
ENSTRUG00000015489	xrn2	94	79.805	ENSETEG00000001740	XRN2	93	79.805	Echinops_telfairi
ENSTRUG00000015489	xrn2	82	68.978	ENSEBUG00000016136	xrn2	100	68.978	Eptatretus_burgeri
ENSTRUG00000015489	xrn2	100	68.251	ENSEASG00005002484	XRN2	100	67.879	Equus_asinus_asinus
ENSTRUG00000015489	xrn2	94	92.308	ENSECAG00000018988	XRN2	96	92.308	Equus_caballus
ENSTRUG00000015489	xrn2	65	96.000	ENSEEUG00000009265	XRN2	67	96.000	Erinaceus_europaeus
ENSTRUG00000015489	xrn2	100	79.079	ENSELUG00000000552	xrn2	100	78.879	Esox_lucius
ENSTRUG00000015489	xrn2	100	67.947	ENSFCAG00000007970	XRN2	100	67.576	Felis_catus
ENSTRUG00000015489	xrn2	93	70.518	ENSFALG00000004508	XRN2	100	67.540	Ficedula_albicollis
ENSTRUG00000015489	xrn2	100	68.788	ENSFDAG00000016311	XRN2	100	68.416	Fukomys_damarensis
ENSTRUG00000015489	xrn2	53	80.843	ENSFHEG00000013039	xrn2	98	80.843	Fundulus_heteroclitus
ENSTRUG00000015489	xrn2	83	81.785	ENSGMOG00000013436	xrn2	100	80.807	Gadus_morhua
ENSTRUG00000015489	xrn2	100	67.984	ENSGALG00000008372	XRN2	90	73.690	Gallus_gallus
ENSTRUG00000015489	xrn2	88	83.793	ENSGAFG00000014284	xrn2	99	83.793	Gambusia_affinis
ENSTRUG00000015489	xrn2	85	84.504	ENSGACG00000011870	xrn2	96	87.716	Gasterosteus_aculeatus
ENSTRUG00000015489	xrn2	93	71.892	ENSGAGG00000004884	XRN2	100	68.718	Gopherus_agassizii
ENSTRUG00000015489	xrn2	100	68.485	ENSGGOG00000013738	XRN2	100	68.113	Gorilla_gorilla
ENSTRUG00000015489	xrn2	53	85.249	ENSHBUG00000005077	xrn2	94	85.249	Haplochromis_burtoni
ENSTRUG00000015489	xrn2	100	67.947	ENSHGLG00000014831	XRN2	100	67.508	Heterocephalus_glaber_female
ENSTRUG00000015489	xrn2	100	67.947	ENSHGLG00100013130	XRN2	100	67.508	Heterocephalus_glaber_male
ENSTRUG00000015489	xrn2	99	79.421	ENSHCOG00000011994	xrn2	99	79.259	Hippocampus_comes
ENSTRUG00000015489	xrn2	100	76.418	ENSIPUG00000006639	xrn2	100	74.826	Ictalurus_punctatus
ENSTRUG00000015489	xrn2	100	68.586	ENSSTOG00000000589	XRN2	100	68.214	Ictidomys_tridecemlineatus
ENSTRUG00000015489	xrn2	100	69.021	ENSJJAG00000022128	Xrn2	100	67.972	Jaculus_jaculus
ENSTRUG00000015489	xrn2	52	89.921	ENSLBEG00000010041	xrn2	100	89.921	Labrus_bergylta
ENSTRUG00000015489	xrn2	91	71.858	ENSLACG00000008307	XRN2	98	75.495	Latimeria_chalumnae
ENSTRUG00000015489	xrn2	99	71.903	ENSLOCG00000016874	xrn2	93	80.503	Lepisosteus_oculatus
ENSTRUG00000015489	xrn2	100	68.049	ENSLAFG00000014624	XRN2	100	67.677	Loxodonta_africana
ENSTRUG00000015489	xrn2	100	68.485	ENSMFAG00000038122	XRN2	100	68.113	Macaca_fascicularis
ENSTRUG00000015489	xrn2	100	68.485	ENSMMUG00000011405	XRN2	100	68.113	Macaca_mulatta
ENSTRUG00000015489	xrn2	100	68.384	ENSMNEG00000040626	XRN2	100	68.012	Macaca_nemestrina
ENSTRUG00000015489	xrn2	100	68.384	ENSMLEG00000041897	XRN2	100	68.012	Mandrillus_leucophaeus
ENSTRUG00000015489	xrn2	93	86.413	ENSMAMG00000008633	xrn2	97	85.174	Mastacembelus_armatus
ENSTRUG00000015489	xrn2	88	86.997	ENSMZEG00005022362	xrn2	98	86.997	Maylandia_zebra
ENSTRUG00000015489	xrn2	93	70.410	ENSMGAG00000003196	XRN2	90	73.465	Meleagris_gallopavo
ENSTRUG00000015489	xrn2	100	68.966	ENSMAUG00000021842	Xrn2	100	68.522	Mesocricetus_auratus
ENSTRUG00000015489	xrn2	100	68.182	ENSMICG00000008126	XRN2	100	67.810	Microcebus_murinus
ENSTRUG00000015489	xrn2	100	68.458	ENSMOCG00000012588	Xrn2	100	68.182	Microtus_ochrogaster
ENSTRUG00000015489	xrn2	88	87.159	ENSMMOG00000017576	xrn2	97	87.159	Mola_mola
ENSTRUG00000015489	xrn2	100	69.028	ENSMODG00000006163	XRN2	100	68.352	Monodelphis_domestica
ENSTRUG00000015489	xrn2	88	85.000	ENSMALG00000011355	xrn2	95	89.443	Monopterus_albus
ENSTRUG00000015489	xrn2	100	68.927	MGP_CAROLIEiJ_G0024400	Xrn2	100	68.485	Mus_caroli
ENSTRUG00000015489	xrn2	100	69.130	ENSMUSG00000027433	Xrn2	100	68.687	Mus_musculus
ENSTRUG00000015489	xrn2	100	68.927	MGP_PahariEiJ_G0025843	Xrn2	100	68.485	Mus_pahari
ENSTRUG00000015489	xrn2	100	69.130	MGP_SPRETEiJ_G0025318	Xrn2	94	77.391	Mus_spretus
ENSTRUG00000015489	xrn2	100	67.097	ENSMPUG00000001198	XRN2	93	66.733	Mustela_putorius_furo
ENSTRUG00000015489	xrn2	100	68.049	ENSMLUG00000001536	XRN2	100	67.778	Myotis_lucifugus
ENSTRUG00000015489	xrn2	100	68.453	ENSNGAG00000018138	Xrn2	100	68.081	Nannospalax_galili
ENSTRUG00000015489	xrn2	88	86.881	ENSNBRG00000008062	xrn2	98	86.881	Neolamprologus_brichardi
ENSTRUG00000015489	xrn2	100	68.485	ENSNLEG00000009991	XRN2	100	68.113	Nomascus_leucogenys
ENSTRUG00000015489	xrn2	51	88.889	ENSMEUG00000008622	-	53	88.889	Notamacropus_eugenii
ENSTRUG00000015489	xrn2	76	73.158	ENSOPRG00000001397	-	63	73.158	Ochotona_princeps
ENSTRUG00000015489	xrn2	100	68.554	ENSODEG00000010745	-	100	68.113	Octodon_degus
ENSTRUG00000015489	xrn2	92	64.254	ENSODEG00000000860	-	96	65.006	Octodon_degus
ENSTRUG00000015489	xrn2	100	82.745	ENSONIG00000018720	xrn2	100	81.606	Oreochromis_niloticus
ENSTRUG00000015489	xrn2	100	68.750	ENSOANG00000015673	XRN2	100	68.352	Ornithorhynchus_anatinus
ENSTRUG00000015489	xrn2	100	68.485	ENSOCUG00000013468	XRN2	100	68.113	Oryctolagus_cuniculus
ENSTRUG00000015489	xrn2	98	81.128	ENSORLG00000017213	xrn2	99	83.805	Oryzias_latipes
ENSTRUG00000015489	xrn2	98	80.923	ENSORLG00020001824	xrn2	100	79.637	Oryzias_latipes_hni
ENSTRUG00000015489	xrn2	98	80.615	ENSORLG00015019747	xrn2	100	79.435	Oryzias_latipes_hsok
ENSTRUG00000015489	xrn2	96	80.335	ENSOMEG00000019820	xrn2	100	79.397	Oryzias_melastigma
ENSTRUG00000015489	xrn2	100	68.857	ENSOGAG00000001068	XRN2	100	68.416	Otolemur_garnettii
ENSTRUG00000015489	xrn2	97	67.427	ENSOARG00000004443	XRN2	99	67.047	Ovis_aries
ENSTRUG00000015489	xrn2	100	68.485	ENSPPAG00000033549	XRN2	100	68.113	Pan_paniscus
ENSTRUG00000015489	xrn2	100	67.947	ENSPPRG00000008732	XRN2	100	67.576	Panthera_pardus
ENSTRUG00000015489	xrn2	97	67.290	ENSPTIG00000015683	XRN2	97	66.909	Panthera_tigris_altaica
ENSTRUG00000015489	xrn2	100	68.485	ENSPTRG00000013308	XRN2	100	68.113	Pan_troglodytes
ENSTRUG00000015489	xrn2	100	68.485	ENSPANG00000018088	XRN2	100	68.113	Papio_anubis
ENSTRUG00000015489	xrn2	100	75.277	ENSPKIG00000016889	xrn2	100	75.252	Paramormyrops_kingsleyae
ENSTRUG00000015489	xrn2	78	75.486	ENSPSIG00000014666	XRN2	100	75.486	Pelodiscus_sinensis
ENSTRUG00000015489	xrn2	100	68.320	ENSPEMG00000000111	Xrn2	100	67.879	Peromyscus_maniculatus_bairdii
ENSTRUG00000015489	xrn2	100	79.213	ENSPFOG00000004182	xrn2	99	78.809	Poecilia_formosa
ENSTRUG00000015489	xrn2	88	83.010	ENSPLAG00000007351	xrn2	98	83.010	Poecilia_latipinna
ENSTRUG00000015489	xrn2	95	78.122	ENSPMEG00000011798	xrn2	99	77.695	Poecilia_mexicana
ENSTRUG00000015489	xrn2	88	83.200	ENSPREG00000012452	xrn2	99	82.899	Poecilia_reticulata
ENSTRUG00000015489	xrn2	100	68.352	ENSPPYG00000010755	XRN2	100	67.911	Pongo_abelii
ENSTRUG00000015489	xrn2	100	65.020	ENSPCAG00000011191	XRN2	100	64.653	Procavia_capensis
ENSTRUG00000015489	xrn2	100	62.525	ENSPCOG00000016468	XRN2	100	62.159	Propithecus_coquereli
ENSTRUG00000015489	xrn2	93	66.184	ENSPVAG00000004596	XRN2	93	66.184	Pteropus_vampyrus
ENSTRUG00000015489	xrn2	88	85.270	ENSPNYG00000001765	xrn2	98	85.270	Pundamilia_nyererei
ENSTRUG00000015489	xrn2	100	75.920	ENSPNAG00000010956	xrn2	99	74.925	Pygocentrus_nattereri
ENSTRUG00000015489	xrn2	100	68.763	ENSRNOG00000011785	Xrn2	100	68.384	Rattus_norvegicus
ENSTRUG00000015489	xrn2	84	74.609	ENSRBIG00000036193	XRN2	100	75.334	Rhinopithecus_bieti
ENSTRUG00000015489	xrn2	100	68.485	ENSRROG00000044400	XRN2	90	68.113	Rhinopithecus_roxellana
ENSTRUG00000015489	xrn2	72	49.309	YOR048C	RAT1	66	52.899	Saccharomyces_cerevisiae
ENSTRUG00000015489	xrn2	100	68.586	ENSSBOG00000021014	XRN2	100	68.214	Saimiri_boliviensis_boliviensis
ENSTRUG00000015489	xrn2	100	75.879	ENSSFOG00015001091	xrn2	100	74.802	Scleropages_formosus
ENSTRUG00000015489	xrn2	89	85.633	ENSSMAG00000007834	xrn2	100	81.344	Scophthalmus_maximus
ENSTRUG00000015489	xrn2	93	82.543	ENSSDUG00000012802	xrn2	99	85.341	Seriola_dumerili
ENSTRUG00000015489	xrn2	90	87.991	ENSSLDG00000021273	xrn2	99	88.235	Seriola_lalandi_dorsalis
ENSTRUG00000015489	xrn2	77	96.000	ENSSARG00000005859	-	62	96.000	Sorex_araneus
ENSTRUG00000015489	xrn2	93	69.089	ENSSPUG00000005485	XRN2	93	69.290	Sphenodon_punctatus
ENSTRUG00000015489	xrn2	100	83.283	ENSSPAG00000016027	xrn2	99	83.182	Stegastes_partitus
ENSTRUG00000015489	xrn2	100	66.835	ENSSSCG00000007109	XRN2	100	66.465	Sus_scrofa
ENSTRUG00000015489	xrn2	93	69.612	ENSTGUG00000007535	XRN2	90	73.055	Taeniopygia_guttata
ENSTRUG00000015489	xrn2	100	85.816	ENSTNIG00000010712	xrn2	91	93.642	Tetraodon_nigroviridis
ENSTRUG00000015489	xrn2	100	67.748	ENSTBEG00000004119	XRN2	100	66.869	Tupaia_belangeri
ENSTRUG00000015489	xrn2	93	78.214	ENSTTRG00000009087	XRN2	93	78.214	Tursiops_truncatus
ENSTRUG00000015489	xrn2	100	68.251	ENSUAMG00000024634	XRN2	97	84.915	Ursus_americanus
ENSTRUG00000015489	xrn2	97	67.601	ENSUMAG00000004012	XRN2	95	67.220	Ursus_maritimus
ENSTRUG00000015489	xrn2	82	83.172	ENSVPAG00000010694	XRN2	85	83.172	Vicugna_pacos
ENSTRUG00000015489	xrn2	100	68.352	ENSVVUG00000012178	XRN2	100	67.980	Vulpes_vulpes
ENSTRUG00000015489	xrn2	100	69.293	ENSXETG00000023501	xrn2	91	76.616	Xenopus_tropicalis
ENSTRUG00000015489	xrn2	100	79.919	ENSXMAG00000000242	xrn2	92	88.321	Xiphophorus_maculatus