EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000015534 (Gene tree)
Gene ID: 101077688
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 12140 bases
Position: chr1:10596784-10608923
Accession: 101077688
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000039721	SF3b1	PF08920.10	2.8e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000039862	-	5756	XM_011607422	ENSTRUP00000039721	1314 (aa)	XP_011605724	H2URZ8

Gene Model

Click here to download ENSTRUG00000015534's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000015534's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000015534	sf3b1	100	93.237	ENSG00000115524	SF3B1	100	93.389	Homo_sapiens
ENSTRUG00000015534	sf3b1	100	97.947	ENSAPOG00000011894	sf3b1	100	97.947	Acanthochromis_polyacanthus
ENSTRUG00000015534	sf3b1	99	93.196	ENSAMEG00000013809	SF3B1	99	93.349	Ailuropoda_melanoleuca
ENSTRUG00000015534	sf3b1	100	96.728	ENSACIG00000020910	sf3b1	97	96.728	Amphilophus_citrinellus
ENSTRUG00000015534	sf3b1	100	97.947	ENSAOCG00000004478	sf3b1	100	97.947	Amphiprion_ocellaris
ENSTRUG00000015534	sf3b1	100	97.947	ENSAPEG00000012937	sf3b1	100	97.947	Amphiprion_percula
ENSTRUG00000015534	sf3b1	100	98.326	ENSATEG00000020435	sf3b1	100	98.326	Anabas_testudineus
ENSTRUG00000015534	sf3b1	99	93.563	ENSAPLG00000003993	SF3B1	99	93.563	Anas_platyrhynchos
ENSTRUG00000015534	sf3b1	100	93.536	ENSACAG00000009612	SF3B1	100	93.536	Anolis_carolinensis
ENSTRUG00000015534	sf3b1	100	93.237	ENSANAG00000021577	SF3B1	100	94.521	Aotus_nancymaae
ENSTRUG00000015534	sf3b1	100	96.575	ENSACLG00000023470	sf3b1	100	96.575	Astatotilapia_calliptera
ENSTRUG00000015534	sf3b1	100	96.960	ENSAMXG00000002219	sf3b1	100	96.960	Astyanax_mexicanus
ENSTRUG00000015534	sf3b1	100	93.237	ENSBTAG00000008915	SF3B1	100	93.389	Bos_taurus
ENSTRUG00000015534	sf3b1	98	65.318	WBGene00011605	sftb-1	97	65.393	Caenorhabditis_elegans
ENSTRUG00000015534	sf3b1	100	93.237	ENSCJAG00000003902	SF3B1	100	93.389	Callithrix_jacchus
ENSTRUG00000015534	sf3b1	100	93.237	ENSCAFG00000010826	SF3B1	100	93.389	Canis_familiaris
ENSTRUG00000015534	sf3b1	100	93.237	ENSCAFG00020004750	SF3B1	100	93.389	Canis_lupus_dingo
ENSTRUG00000015534	sf3b1	100	93.237	ENSCHIG00000015226	SF3B1	100	93.389	Capra_hircus
ENSTRUG00000015534	sf3b1	100	93.161	ENSTSYG00000009214	SF3B1	100	93.313	Carlito_syrichta
ENSTRUG00000015534	sf3b1	99	93.140	ENSCAPG00000006547	SF3B1	99	93.293	Cavia_aperea
ENSTRUG00000015534	sf3b1	99	93.262	ENSCPOG00000009353	SF3B1	100	93.415	Cavia_porcellus
ENSTRUG00000015534	sf3b1	100	93.237	ENSCCAG00000020506	SF3B1	100	93.389	Cebus_capucinus
ENSTRUG00000015534	sf3b1	100	93.237	ENSCATG00000035735	SF3B1	100	93.389	Cercocebus_atys
ENSTRUG00000015534	sf3b1	100	92.781	ENSCLAG00000014767	SF3B1	100	92.933	Chinchilla_lanigera
ENSTRUG00000015534	sf3b1	100	93.237	ENSCSAG00000011505	SF3B1	100	93.389	Chlorocebus_sabaeus
ENSTRUG00000015534	sf3b1	76	92.360	ENSCHOG00000009860	SF3B1	76	92.360	Choloepus_hoffmanni
ENSTRUG00000015534	sf3b1	100	93.760	ENSCPBG00000021902	SF3B1	99	94.865	Chrysemys_picta_bellii
ENSTRUG00000015534	sf3b1	68	78.299	ENSCING00000002558	-	99	78.501	Ciona_intestinalis
ENSTRUG00000015534	sf3b1	99	80.377	ENSCSAVG00000002559	-	99	80.302	Ciona_savignyi
ENSTRUG00000015534	sf3b1	100	93.237	ENSCANG00000029415	SF3B1	100	93.389	Colobus_angolensis_palliatus
ENSTRUG00000015534	sf3b1	100	93.237	ENSCGRG00001016990	Sf3b1	100	93.389	Cricetulus_griseus_chok1gshd
ENSTRUG00000015534	sf3b1	100	93.237	ENSCGRG00000005301	Sf3b1	100	93.389	Cricetulus_griseus_crigri
ENSTRUG00000015534	sf3b1	100	93.607	ENSCSEG00000003860	sf3b1	100	93.607	Cynoglossus_semilaevis
ENSTRUG00000015534	sf3b1	96	97.546	ENSCVAG00000003680	sf3b1	99	97.546	Cyprinodon_variegatus
ENSTRUG00000015534	sf3b1	100	96.198	ENSDARG00000056138	sf3b1	100	96.198	Danio_rerio
ENSTRUG00000015534	sf3b1	100	93.166	ENSDNOG00000011754	SF3B1	100	93.318	Dasypus_novemcinctus
ENSTRUG00000015534	sf3b1	99	91.348	ENSDORG00000002399	Sf3b1	100	91.348	Dipodomys_ordii
ENSTRUG00000015534	sf3b1	100	76.320	FBgn0031266	Sf3b1	100	76.320	Drosophila_melanogaster
ENSTRUG00000015534	sf3b1	83	92.018	ENSETEG00000009188	SF3B1	100	92.202	Echinops_telfairi
ENSTRUG00000015534	sf3b1	99	85.812	ENSEBUG00000004325	sf3b1	100	88.458	Eptatretus_burgeri
ENSTRUG00000015534	sf3b1	100	93.237	ENSEASG00005020159	SF3B1	98	93.389	Equus_asinus_asinus
ENSTRUG00000015534	sf3b1	100	93.237	ENSECAG00000021657	SF3B1	98	93.389	Equus_caballus
ENSTRUG00000015534	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSTRUG00000015534	sf3b1	100	96.148	ENSELUG00000005977	sf3b1	98	96.148	Esox_lucius
ENSTRUG00000015534	sf3b1	100	93.237	ENSFCAG00000005038	SF3B1	100	93.389	Felis_catus
ENSTRUG00000015534	sf3b1	99	93.487	ENSFALG00000004281	SF3B1	99	93.487	Ficedula_albicollis
ENSTRUG00000015534	sf3b1	100	93.237	ENSFDAG00000017510	SF3B1	100	93.389	Fukomys_damarensis
ENSTRUG00000015534	sf3b1	100	96.806	ENSFHEG00000014333	sf3b1	100	96.806	Fundulus_heteroclitus
ENSTRUG00000015534	sf3b1	100	96.279	ENSGMOG00000006773	sf3b1	100	96.279	Gadus_morhua
ENSTRUG00000015534	sf3b1	100	93.531	ENSGALG00000008038	SF3B1	100	93.531	Gallus_gallus
ENSTRUG00000015534	sf3b1	98	97.991	ENSGAFG00000000704	sf3b1	99	97.991	Gambusia_affinis
ENSTRUG00000015534	sf3b1	100	96.960	ENSGACG00000008839	sf3b1	100	96.960	Gasterosteus_aculeatus
ENSTRUG00000015534	sf3b1	100	93.122	ENSGAGG00000017478	SF3B1	100	93.122	Gopherus_agassizii
ENSTRUG00000015534	sf3b1	99	88.055	ENSGGOG00000009264	SF3B1	99	88.285	Gorilla_gorilla
ENSTRUG00000015534	sf3b1	99	96.646	ENSHBUG00000007705	sf3b1	99	96.646	Haplochromis_burtoni
ENSTRUG00000015534	sf3b1	99	93.267	ENSHGLG00000008285	-	99	93.420	Heterocephalus_glaber_female
ENSTRUG00000015534	sf3b1	99	91.278	ENSHGLG00100005535	-	99	91.431	Heterocephalus_glaber_male
ENSTRUG00000015534	sf3b1	100	96.899	ENSHCOG00000016775	sf3b1	100	96.899	Hippocampus_comes
ENSTRUG00000015534	sf3b1	100	96.730	ENSIPUG00000013171	sf3b1	100	96.730	Ictalurus_punctatus
ENSTRUG00000015534	sf3b1	100	93.237	ENSSTOG00000011034	SF3B1	100	93.389	Ictidomys_tridecemlineatus
ENSTRUG00000015534	sf3b1	99	93.241	ENSJJAG00000010903	Sf3b1	99	93.395	Jaculus_jaculus
ENSTRUG00000015534	sf3b1	100	97.193	ENSKMAG00000004009	sf3b1	100	97.193	Kryptolebias_marmoratus
ENSTRUG00000015534	sf3b1	100	97.336	ENSLBEG00000022208	sf3b1	100	97.336	Labrus_bergylta
ENSTRUG00000015534	sf3b1	99	90.038	ENSLACG00000014832	SF3B1	99	90.114	Latimeria_chalumnae
ENSTRUG00000015534	sf3b1	100	95.079	ENSLOCG00000003899	sf3b1	100	95.079	Lepisosteus_oculatus
ENSTRUG00000015534	sf3b1	100	93.237	ENSLAFG00000001956	SF3B1	100	93.389	Loxodonta_africana
ENSTRUG00000015534	sf3b1	99	93.267	ENSMMUG00000022430	SF3B1	99	93.420	Macaca_mulatta
ENSTRUG00000015534	sf3b1	100	93.237	ENSMNEG00000042333	SF3B1	100	94.521	Macaca_nemestrina
ENSTRUG00000015534	sf3b1	94	88.558	ENSMLEG00000026141	SF3B1	98	89.050	Mandrillus_leucophaeus
ENSTRUG00000015534	sf3b1	100	97.945	ENSMAMG00000010241	sf3b1	100	97.945	Mastacembelus_armatus
ENSTRUG00000015534	sf3b1	100	96.575	ENSMZEG00005021254	sf3b1	100	96.575	Maylandia_zebra
ENSTRUG00000015534	sf3b1	99	92.950	ENSMGAG00000007017	SF3B1	99	92.950	Meleagris_gallopavo
ENSTRUG00000015534	sf3b1	99	89.059	ENSMAUG00000009071	Sf3b1	99	89.212	Mesocricetus_auratus
ENSTRUG00000015534	sf3b1	100	93.237	ENSMICG00000013879	SF3B1	100	93.389	Microcebus_murinus
ENSTRUG00000015534	sf3b1	99	88.991	ENSMOCG00000000455	Sf3b1	99	88.991	Microtus_ochrogaster
ENSTRUG00000015534	sf3b1	84	97.361	ENSMMOG00000000475	sf3b1	100	97.361	Mola_mola
ENSTRUG00000015534	sf3b1	100	92.933	ENSMODG00000012275	SF3B1	100	93.085	Monodelphis_domestica
ENSTRUG00000015534	sf3b1	100	97.945	ENSMALG00000017211	sf3b1	100	97.945	Monopterus_albus
ENSTRUG00000015534	sf3b1	100	93.237	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.389	Mus_caroli
ENSTRUG00000015534	sf3b1	100	93.237	ENSMUSG00000025982	Sf3b1	100	93.389	Mus_musculus
ENSTRUG00000015534	sf3b1	100	93.237	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.389	Mus_spretus
ENSTRUG00000015534	sf3b1	100	93.237	ENSMPUG00000007799	SF3B1	100	93.389	Mustela_putorius_furo
ENSTRUG00000015534	sf3b1	100	92.097	ENSMLUG00000000840	SF3B1	100	92.249	Myotis_lucifugus
ENSTRUG00000015534	sf3b1	99	92.988	ENSNGAG00000021884	-	100	93.140	Nannospalax_galili
ENSTRUG00000015534	sf3b1	100	91.939	ENSNBRG00000015816	sf3b1	100	91.939	Neolamprologus_brichardi
ENSTRUG00000015534	sf3b1	100	93.237	ENSNLEG00000006861	SF3B1	100	93.389	Nomascus_leucogenys
ENSTRUG00000015534	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSTRUG00000015534	sf3b1	100	80.743	ENSOPRG00000008596	SF3B1	100	80.892	Ochotona_princeps
ENSTRUG00000015534	sf3b1	100	93.237	ENSODEG00000011153	-	100	93.389	Octodon_degus
ENSTRUG00000015534	sf3b1	100	96.575	ENSONIG00000013758	sf3b1	100	96.575	Oreochromis_niloticus
ENSTRUG00000015534	sf3b1	83	94.813	ENSOCUG00000012722	-	97	94.813	Oryctolagus_cuniculus
ENSTRUG00000015534	sf3b1	100	96.880	ENSORLG00000020219	sf3b1	100	96.880	Oryzias_latipes
ENSTRUG00000015534	sf3b1	100	96.880	ENSORLG00020001746	sf3b1	100	96.880	Oryzias_latipes_hni
ENSTRUG00000015534	sf3b1	64	94.899	ENSORLG00015001759	sf3b1	98	94.899	Oryzias_latipes_hsok
ENSTRUG00000015534	sf3b1	100	97.186	ENSOMEG00000019231	sf3b1	100	97.186	Oryzias_melastigma
ENSTRUG00000015534	sf3b1	100	93.237	ENSOARG00000015374	SF3B1	100	93.389	Ovis_aries
ENSTRUG00000015534	sf3b1	100	93.237	ENSPPAG00000035007	SF3B1	100	93.389	Pan_paniscus
ENSTRUG00000015534	sf3b1	100	93.237	ENSPPRG00000009090	SF3B1	100	93.389	Panthera_pardus
ENSTRUG00000015534	sf3b1	100	93.237	ENSPTIG00000021557	SF3B1	100	93.389	Panthera_tigris_altaica
ENSTRUG00000015534	sf3b1	99	85.954	ENSPTRG00000012771	SF3B1	99	86.107	Pan_troglodytes
ENSTRUG00000015534	sf3b1	100	93.237	ENSPANG00000013417	SF3B1	100	93.389	Papio_anubis
ENSTRUG00000015534	sf3b1	100	96.052	ENSPKIG00000000784	sf3b1	100	96.052	Paramormyrops_kingsleyae
ENSTRUG00000015534	sf3b1	99	92.638	ENSPSIG00000017222	SF3B1	98	92.638	Pelodiscus_sinensis
ENSTRUG00000015534	sf3b1	91	97.229	ENSPMGG00000004330	sf3b1	99	97.229	Periophthalmus_magnuspinnatus
ENSTRUG00000015534	sf3b1	99	93.267	ENSPEMG00000010699	Sf3b1	100	93.420	Peromyscus_maniculatus_bairdii
ENSTRUG00000015534	sf3b1	100	88.738	ENSPMAG00000001311	sf3b1	100	89.040	Petromyzon_marinus
ENSTRUG00000015534	sf3b1	100	92.933	ENSPCIG00000010642	SF3B1	100	93.085	Phascolarctos_cinereus
ENSTRUG00000015534	sf3b1	100	97.720	ENSPFOG00000000073	sf3b1	100	97.720	Poecilia_formosa
ENSTRUG00000015534	sf3b1	100	97.795	ENSPLAG00000002293	sf3b1	100	97.795	Poecilia_latipinna
ENSTRUG00000015534	sf3b1	100	97.795	ENSPMEG00000000446	sf3b1	98	97.795	Poecilia_mexicana
ENSTRUG00000015534	sf3b1	100	97.871	ENSPREG00000019652	sf3b1	100	97.871	Poecilia_reticulata
ENSTRUG00000015534	sf3b1	83	96.239	ENSPPYG00000013044	SF3B1	95	96.239	Pongo_abelii
ENSTRUG00000015534	sf3b1	100	93.085	ENSPCAG00000009292	SF3B1	100	93.237	Procavia_capensis
ENSTRUG00000015534	sf3b1	100	93.237	ENSPCOG00000024074	SF3B1	100	93.389	Propithecus_coquereli
ENSTRUG00000015534	sf3b1	100	93.237	ENSPVAG00000008302	SF3B1	100	93.389	Pteropus_vampyrus
ENSTRUG00000015534	sf3b1	100	96.575	ENSPNYG00000014939	sf3b1	100	96.575	Pundamilia_nyererei
ENSTRUG00000015534	sf3b1	100	96.657	ENSPNAG00000008288	sf3b1	100	96.657	Pygocentrus_nattereri
ENSTRUG00000015534	sf3b1	100	93.237	ENSRNOG00000013516	Sf3b1	100	93.389	Rattus_norvegicus
ENSTRUG00000015534	sf3b1	99	89.748	ENSRBIG00000026096	SF3B1	99	89.901	Rhinopithecus_bieti
ENSTRUG00000015534	sf3b1	100	93.237	ENSRROG00000031308	SF3B1	100	93.389	Rhinopithecus_roxellana
ENSTRUG00000015534	sf3b1	100	93.237	ENSSBOG00000020080	SF3B1	100	93.389	Saimiri_boliviensis_boliviensis
ENSTRUG00000015534	sf3b1	100	92.933	ENSSHAG00000017564	SF3B1	100	93.085	Sarcophilus_harrisii
ENSTRUG00000015534	sf3b1	100	96.122	ENSSFOG00015021535	sf3b1	100	96.122	Scleropages_formosus
ENSTRUG00000015534	sf3b1	99	97.420	ENSSMAG00000013977	sf3b1	99	97.420	Scophthalmus_maximus
ENSTRUG00000015534	sf3b1	100	97.869	ENSSDUG00000017422	sf3b1	100	97.869	Seriola_dumerili
ENSTRUG00000015534	sf3b1	100	97.945	ENSSLDG00000019495	sf3b1	100	97.945	Seriola_lalandi_dorsalis
ENSTRUG00000015534	sf3b1	75	98.768	ENSSARG00000007016	SF3B1	76	98.768	Sorex_araneus
ENSTRUG00000015534	sf3b1	100	93.455	ENSSPUG00000000410	SF3B1	100	93.455	Sphenodon_punctatus
ENSTRUG00000015534	sf3b1	100	97.793	ENSSPAG00000010451	sf3b1	99	97.793	Stegastes_partitus
ENSTRUG00000015534	sf3b1	91	92.756	ENSSSCG00000016075	SF3B1	100	94.521	Sus_scrofa
ENSTRUG00000015534	sf3b1	100	93.531	ENSTGUG00000010553	SF3B1	100	93.531	Taeniopygia_guttata
ENSTRUG00000015534	sf3b1	84	96.502	ENSTBEG00000008714	SF3B1	93	96.502	Tupaia_belangeri
ENSTRUG00000015534	sf3b1	92	93.300	ENSTTRG00000003414	SF3B1	92	93.300	Tursiops_truncatus
ENSTRUG00000015534	sf3b1	94	83.252	ENSUAMG00000018506	SF3B1	99	97.773	Ursus_americanus
ENSTRUG00000015534	sf3b1	100	93.237	ENSUMAG00000020945	SF3B1	100	93.389	Ursus_maritimus
ENSTRUG00000015534	sf3b1	95	93.366	ENSVPAG00000005798	SF3B1	96	93.366	Vicugna_pacos
ENSTRUG00000015534	sf3b1	100	93.237	ENSVVUG00000025948	SF3B1	95	93.389	Vulpes_vulpes
ENSTRUG00000015534	sf3b1	100	91.945	ENSXETG00000013339	sf3b1	100	91.945	Xenopus_tropicalis
ENSTRUG00000015534	sf3b1	100	93.308	ENSXCOG00000018086	sf3b1	100	93.612	Xiphophorus_couchianus
ENSTRUG00000015534	sf3b1	100	97.795	ENSXMAG00000007369	sf3b1	100	97.795	Xiphophorus_maculatus