EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000015808 (Gene tree)
Gene ID: 101074104
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 14374 bases
Position: chr1:10446553-10460926
Accession: 101074104
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000040388	Rif1_N	PF12231.8	1.5e-79	1	1
ENSTRUP00000040389	Rif1_N	PF12231.8	1.5e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000040531	-	7307	-	ENSTRUP00000040389	2305 (aa)	-	H2UTW5
ENSTRUT00000040530	-	7226	XM_011607562	ENSTRUP00000040388	2278 (aa)	XP_011605864	H2UTW4

Gene Model

Click here to download ENSTRUG00000015808's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000015808's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000015808	rif1	70	49.325	ENSG00000080345	RIF1	97	54.005	Homo_sapiens
ENSTRUG00000015808	rif1	99	67.573	ENSAPOG00000011073	rif1	90	67.508	Acanthochromis_polyacanthus
ENSTRUG00000015808	rif1	69	50.199	ENSAMEG00000008461	RIF1	64	50.199	Ailuropoda_melanoleuca
ENSTRUG00000015808	rif1	88	72.491	ENSACIG00000017765	rif1	97	70.334	Amphilophus_citrinellus
ENSTRUG00000015808	rif1	97	65.774	ENSAOCG00000017231	rif1	89	66.927	Amphiprion_ocellaris
ENSTRUG00000015808	rif1	93	74.146	ENSAPEG00000013228	rif1	88	71.281	Amphiprion_percula
ENSTRUG00000015808	rif1	99	60.695	ENSATEG00000022887	rif1	99	60.369	Anabas_testudineus
ENSTRUG00000015808	rif1	70	48.835	ENSACAG00000003714	RIF1	67	48.835	Anolis_carolinensis
ENSTRUG00000015808	rif1	70	49.922	ENSANAG00000024840	RIF1	64	49.961	Aotus_nancymaae
ENSTRUG00000015808	rif1	90	58.073	ENSAMXG00000010910	rif1	76	58.073	Astyanax_mexicanus
ENSTRUG00000015808	rif1	68	50.642	ENSBTAG00000021020	RIF1	66	50.642	Bos_taurus
ENSTRUG00000015808	rif1	70	49.070	ENSCJAG00000003138	RIF1	64	49.842	Callithrix_jacchus
ENSTRUG00000015808	rif1	55	48.142	ENSCAFG00000005670	RIF1	70	49.013	Canis_familiaris
ENSTRUG00000015808	rif1	74	48.142	ENSCAFG00020016401	RIF1	70	49.013	Canis_lupus_dingo
ENSTRUG00000015808	rif1	69	49.443	ENSCHIG00000020327	RIF1	63	50.366	Capra_hircus
ENSTRUG00000015808	rif1	71	47.696	ENSTSYG00000008861	RIF1	63	47.696	Carlito_syrichta
ENSTRUG00000015808	rif1	59	41.598	ENSCAPG00000008957	RIF1	67	41.598	Cavia_aperea
ENSTRUG00000015808	rif1	69	47.322	ENSCPOG00000037898	RIF1	66	47.344	Cavia_porcellus
ENSTRUG00000015808	rif1	69	47.510	ENSCCAG00000024760	RIF1	63	47.857	Cebus_capucinus
ENSTRUG00000015808	rif1	73	49.484	ENSCATG00000033353	RIF1	67	49.563	Cercocebus_atys
ENSTRUG00000015808	rif1	65	48.130	ENSCLAG00000001517	RIF1	61	49.235	Chinchilla_lanigera
ENSTRUG00000015808	rif1	73	49.020	ENSCSAG00000016089	RIF1	67	49.608	Chlorocebus_sabaeus
ENSTRUG00000015808	rif1	68	47.807	ENSCHOG00000007187	RIF1	62	47.807	Choloepus_hoffmanni
ENSTRUG00000015808	rif1	87	44.090	ENSCPBG00000025885	RIF1	69	49.116	Chrysemys_picta_bellii
ENSTRUG00000015808	rif1	69	56.652	ENSCANG00000028962	RIF1	68	56.652	Colobus_angolensis_palliatus
ENSTRUG00000015808	rif1	71	46.642	ENSCGRG00001024589	Rif1	67	47.917	Cricetulus_griseus_chok1gshd
ENSTRUG00000015808	rif1	70	48.077	ENSCGRG00000010713	Rif1	66	49.331	Cricetulus_griseus_crigri
ENSTRUG00000015808	rif1	88	60.325	ENSCSEG00000003945	rif1	96	59.916	Cynoglossus_semilaevis
ENSTRUG00000015808	rif1	93	65.193	ENSCVAG00000022479	rif1	99	55.579	Cyprinodon_variegatus
ENSTRUG00000015808	rif1	95	50.800	ENSDARG00000062650	rif1	78	57.504	Danio_rerio
ENSTRUG00000015808	rif1	70	48.502	ENSDNOG00000011194	RIF1	62	48.659	Dasypus_novemcinctus
ENSTRUG00000015808	rif1	67	49.673	ENSETEG00000012421	RIF1	63	49.673	Echinops_telfairi
ENSTRUG00000015808	rif1	70	49.488	ENSEASG00005023434	RIF1	52	66.447	Equus_asinus_asinus
ENSTRUG00000015808	rif1	66	58.459	ENSECAG00000012679	RIF1	62	58.459	Equus_caballus
ENSTRUG00000015808	rif1	72	64.141	ENSELUG00000006826	rif1	67	63.025	Esox_lucius
ENSTRUG00000015808	rif1	70	49.608	ENSFCAG00000029742	RIF1	63	50.079	Felis_catus
ENSTRUG00000015808	rif1	69	48.492	ENSFDAG00000006538	RIF1	63	49.560	Fukomys_damarensis
ENSTRUG00000015808	rif1	99	55.748	ENSFHEG00000013721	rif1	90	64.449	Fundulus_heteroclitus
ENSTRUG00000015808	rif1	71	62.963	ENSGMOG00000003517	rif1	98	62.963	Gadus_morhua
ENSTRUG00000015808	rif1	99	74.301	ENSGAFG00000017196	rif1	99	74.301	Gambusia_affinis
ENSTRUG00000015808	rif1	87	77.021	ENSGACG00000008579	rif1	90	77.119	Gasterosteus_aculeatus
ENSTRUG00000015808	rif1	73	49.646	ENSGAGG00000012595	RIF1	75	50.683	Gopherus_agassizii
ENSTRUG00000015808	rif1	64	57.826	ENSGGOG00000040178	RIF1	63	57.826	Gorilla_gorilla
ENSTRUG00000015808	rif1	99	61.696	ENSHBUG00000007125	rif1	99	61.934	Haplochromis_burtoni
ENSTRUG00000015808	rif1	62	50.000	ENSHGLG00100009807	RIF1	61	50.603	Heterocephalus_glaber_male
ENSTRUG00000015808	rif1	99	61.405	ENSHCOG00000015943	rif1	71	62.623	Hippocampus_comes
ENSTRUG00000015808	rif1	85	56.539	ENSIPUG00000021703	rif1	78	58.203	Ictalurus_punctatus
ENSTRUG00000015808	rif1	69	50.884	ENSSTOG00000020712	RIF1	64	50.273	Ictidomys_tridecemlineatus
ENSTRUG00000015808	rif1	99	56.100	ENSKMAG00000002852	rif1	99	56.506	Kryptolebias_marmoratus
ENSTRUG00000015808	rif1	91	71.045	ENSLBEG00000023196	rif1	70	71.045	Labrus_bergylta
ENSTRUG00000015808	rif1	70	57.973	ENSLOCG00000002657	rif1	83	53.338	Lepisosteus_oculatus
ENSTRUG00000015808	rif1	71	49.920	ENSLAFG00000009796	RIF1	66	49.920	Loxodonta_africana
ENSTRUG00000015808	rif1	79	48.638	ENSMFAG00000032233	RIF1	72	49.603	Macaca_fascicularis
ENSTRUG00000015808	rif1	79	48.638	ENSMMUG00000008611	RIF1	72	49.603	Macaca_mulatta
ENSTRUG00000015808	rif1	75	49.842	ENSMNEG00000031616	RIF1	69	49.645	Macaca_nemestrina
ENSTRUG00000015808	rif1	75	47.806	ENSMLEG00000042945	RIF1	69	48.728	Mandrillus_leucophaeus
ENSTRUG00000015808	rif1	88	65.451	ENSMAMG00000001745	rif1	86	65.451	Mastacembelus_armatus
ENSTRUG00000015808	rif1	95	74.788	ENSMZEG00005020920	rif1	99	74.976	Maylandia_zebra
ENSTRUG00000015808	rif1	65	62.571	ENSMAUG00000013158	Rif1	64	62.571	Mesocricetus_auratus
ENSTRUG00000015808	rif1	70	48.991	ENSMICG00000046127	RIF1	64	49.960	Microcebus_murinus
ENSTRUG00000015808	rif1	71	47.437	ENSMOCG00000009381	Rif1	67	48.370	Microtus_ochrogaster
ENSTRUG00000015808	rif1	99	58.147	ENSMMOG00000006519	rif1	99	58.333	Mola_mola
ENSTRUG00000015808	rif1	69	50.796	ENSMODG00000003703	RIF1	65	50.876	Monodelphis_domestica
ENSTRUG00000015808	rif1	97	62.073	ENSMALG00000016759	rif1	99	63.090	Monopterus_albus
ENSTRUG00000015808	rif1	70	47.972	MGP_CAROLIEiJ_G0023555	Rif1	66	49.224	Mus_caroli
ENSTRUG00000015808	rif1	70	47.712	ENSMUSG00000036202	Rif1	65	49.042	Mus_musculus
ENSTRUG00000015808	rif1	71	46.580	MGP_PahariEiJ_G0025006	Rif1	66	46.656	Mus_pahari
ENSTRUG00000015808	rif1	70	48.179	MGP_SPRETEiJ_G0024476	Rif1	65	49.845	Mus_spretus
ENSTRUG00000015808	rif1	73	48.744	ENSMPUG00000000371	RIF1	68	49.640	Mustela_putorius_furo
ENSTRUG00000015808	rif1	58	47.576	ENSMLUG00000003376	RIF1	60	47.576	Myotis_lucifugus
ENSTRUG00000015808	rif1	88	71.348	ENSNBRG00000014257	rif1	99	59.514	Neolamprologus_brichardi
ENSTRUG00000015808	rif1	69	48.212	ENSNLEG00000010955	RIF1	63	48.819	Nomascus_leucogenys
ENSTRUG00000015808	rif1	71	47.326	ENSODEG00000003950	RIF1	66	48.268	Octodon_degus
ENSTRUG00000015808	rif1	99	60.881	ENSONIG00000013657	rif1	99	61.006	Oreochromis_niloticus
ENSTRUG00000015808	rif1	58	54.649	ENSOANG00000006078	-	55	54.701	Ornithorhynchus_anatinus
ENSTRUG00000015808	rif1	73	48.880	ENSOCUG00000017435	RIF1	67	48.921	Oryctolagus_cuniculus
ENSTRUG00000015808	rif1	97	71.865	ENSORLG00020001302	rif1	88	62.735	Oryzias_latipes_hni
ENSTRUG00000015808	rif1	97	71.865	ENSORLG00015000009	rif1	88	63.232	Oryzias_latipes_hsok
ENSTRUG00000015808	rif1	92	61.389	ENSOMEG00000021513	rif1	88	61.803	Oryzias_melastigma
ENSTRUG00000015808	rif1	70	48.792	ENSOGAG00000006141	RIF1	64	49.603	Otolemur_garnettii
ENSTRUG00000015808	rif1	69	49.485	ENSOARG00000008930	RIF1	63	50.485	Ovis_aries
ENSTRUG00000015808	rif1	70	49.483	ENSPPAG00000023754	RIF1	64	49.562	Pan_paniscus
ENSTRUG00000015808	rif1	70	49.449	ENSPPRG00000003618	RIF1	64	49.449	Panthera_pardus
ENSTRUG00000015808	rif1	70	49.449	ENSPTIG00000020652	RIF1	63	49.921	Panthera_tigris_altaica
ENSTRUG00000015808	rif1	70	49.483	ENSPTRG00000012534	RIF1	64	49.562	Pan_troglodytes
ENSTRUG00000015808	rif1	73	49.404	ENSPANG00000008525	RIF1	67	49.484	Papio_anubis
ENSTRUG00000015808	rif1	98	58.873	ENSPKIG00000004267	rif1	77	58.873	Paramormyrops_kingsleyae
ENSTRUG00000015808	rif1	86	59.161	ENSPMGG00000016141	rif1	94	62.245	Periophthalmus_magnuspinnatus
ENSTRUG00000015808	rif1	70	49.534	ENSPEMG00000000446	Rif1	66	50.435	Peromyscus_maniculatus_bairdii
ENSTRUG00000015808	rif1	75	49.882	ENSPCIG00000009185	RIF1	71	49.882	Phascolarctos_cinereus
ENSTRUG00000015808	rif1	92	53.739	ENSPFOG00000000554	-	99	56.210	Poecilia_formosa
ENSTRUG00000015808	rif1	99	56.343	ENSPFOG00000017804	rif1	99	57.646	Poecilia_formosa
ENSTRUG00000015808	rif1	99	55.289	ENSPLAG00000017945	rif1	99	55.983	Poecilia_latipinna
ENSTRUG00000015808	rif1	66	58.075	ENSPMEG00000006897	-	99	55.198	Poecilia_mexicana
ENSTRUG00000015808	rif1	89	75.339	ENSPREG00000018052	rif1	96	75.339	Poecilia_reticulata
ENSTRUG00000015808	rif1	70	49.255	ENSPPYG00000012846	RIF1	64	49.881	Pongo_abelii
ENSTRUG00000015808	rif1	75	48.991	ENSPCOG00000027888	RIF1	68	49.960	Propithecus_coquereli
ENSTRUG00000015808	rif1	59	59.674	ENSPVAG00000014276	RIF1	57	59.674	Pteropus_vampyrus
ENSTRUG00000015808	rif1	95	75.259	ENSPNYG00000012940	rif1	99	75.259	Pundamilia_nyererei
ENSTRUG00000015808	rif1	93	60.907	ENSPNAG00000016685	rif1	79	60.907	Pygocentrus_nattereri
ENSTRUG00000015808	rif1	71	46.986	ENSRNOG00000054901	Rif1	66	47.656	Rattus_norvegicus
ENSTRUG00000015808	rif1	75	47.777	ENSRBIG00000003704	RIF1	68	48.618	Rhinopithecus_bieti
ENSTRUG00000015808	rif1	75	47.976	ENSRROG00000028206	RIF1	69	48.816	Rhinopithecus_roxellana
ENSTRUG00000015808	rif1	66	52.326	ENSSBOG00000029530	RIF1	62	52.326	Saimiri_boliviensis_boliviensis
ENSTRUG00000015808	rif1	69	50.158	ENSSHAG00000018552	RIF1	65	50.158	Sarcophilus_harrisii
ENSTRUG00000015808	rif1	70	61.050	ENSSFOG00015021539	rif1	67	57.220	Scleropages_formosus
ENSTRUG00000015808	rif1	85	68.718	ENSSMAG00000011704	rif1	76	68.329	Scophthalmus_maximus
ENSTRUG00000015808	rif1	92	65.135	ENSSDUG00000015632	rif1	99	60.292	Seriola_dumerili
ENSTRUG00000015808	rif1	86	70.263	ENSSLDG00000019531	rif1	99	59.601	Seriola_lalandi_dorsalis
ENSTRUG00000015808	rif1	62	53.434	ENSSPUG00000003062	RIF1	67	50.967	Sphenodon_punctatus
ENSTRUG00000015808	rif1	66	76.829	ENSSPAG00000018359	rif1	93	76.829	Stegastes_partitus
ENSTRUG00000015808	rif1	69	50.079	ENSSSCG00000016395	RIF1	63	50.438	Sus_scrofa
ENSTRUG00000015808	rif1	99	72.615	ENSTNIG00000011538	rif1	99	72.743	Tetraodon_nigroviridis
ENSTRUG00000015808	rif1	63	53.564	ENSTBEG00000016082	RIF1	58	53.564	Tupaia_belangeri
ENSTRUG00000015808	rif1	69	49.134	ENSTTRG00000011190	RIF1	63	50.040	Tursiops_truncatus
ENSTRUG00000015808	rif1	59	47.933	ENSUAMG00000026385	RIF1	59	47.933	Ursus_americanus
ENSTRUG00000015808	rif1	69	49.123	ENSUMAG00000000337	RIF1	63	49.123	Ursus_maritimus
ENSTRUG00000015808	rif1	70	48.377	ENSVPAG00000002162	RIF1	64	48.377	Vicugna_pacos
ENSTRUG00000015808	rif1	79	49.606	ENSVVUG00000011293	RIF1	71	53.150	Vulpes_vulpes
ENSTRUG00000015808	rif1	81	44.947	ENSXETG00000004530	rif1	78	45.213	Xenopus_tropicalis
ENSTRUG00000015808	rif1	87	62.092	ENSXMAG00000000506	rif1	97	53.829	Xiphophorus_maculatus