EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000016461 (Gene tree)
Gene ID: 101066960
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 12683 bases
Position: chr18:5436252-5448934
Accession: 101066960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000042073	RRM_1	PF00076.22	8.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000042217	-	5970	XM_003972805	ENSTRUP00000042073	547 (aa)	XP_003972854	H2UYP4

Gene Model

Click here to download ENSTRUG00000016461's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000016461's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000016461	cpsf6	69	57.576	ENSG00000149532	CPSF7	100	47.333	Homo_sapiens
ENSTRUG00000016461	cpsf6	94	79.350	ENSG00000111605	CPSF6	88	77.660	Homo_sapiens
ENSTRUG00000016461	cpsf6	63	92.814	ENSAMXG00000016745	CPSF6	75	92.121	Astyanax_mexicanus
ENSTRUG00000016461	cpsf6	77	51.397	ENSCJAG00000019282	CPSF7	79	59.864	Callithrix_jacchus
ENSTRUG00000016461	cpsf6	91	78.656	ENSCAFG00000000424	CPSF6	72	79.618	Canis_familiaris
ENSTRUG00000016461	cpsf6	91	78.926	ENSTSYG00000008591	CPSF6	76	80.769	Carlito_syrichta
ENSTRUG00000016461	cpsf6	61	38.830	ENSCSEG00000001956	CPSF7	57	43.972	Cynoglossus_semilaevis
ENSTRUG00000016461	cpsf6	70	33.636	ENSCVAG00000007392	CPSF7	81	43.448	Cyprinodon_variegatus
ENSTRUG00000016461	cpsf6	77	51.955	ENSDNOG00000018517	CPSF7	79	60.544	Dasypus_novemcinctus
ENSTRUG00000016461	cpsf6	69	79.263	ENSETEG00000002097	CPSF6	62	80.500	Echinops_telfairi
ENSTRUG00000016461	cpsf6	65	51.562	ENSETEG00000003765	CPSF7	67	46.369	Echinops_telfairi
ENSTRUG00000016461	cpsf6	69	58.333	ENSECAG00000018521	CPSF7	81	60.544	Equus_caballus
ENSTRUG00000016461	cpsf6	77	51.955	ENSFCAG00000013677	CPSF7	81	60.544	Felis_catus
ENSTRUG00000016461	cpsf6	78	51.892	ENSFALG00000011927	CPSF7	76	55.233	Ficedula_albicollis
ENSTRUG00000016461	cpsf6	54	95.833	ENSGMOG00000012951	cpsf6	53	96.667	Gadus_morhua
ENSTRUG00000016461	cpsf6	94	88.224	ENSGACG00000019685	cpsf6	94	89.961	Gasterosteus_aculeatus
ENSTRUG00000016461	cpsf6	52	90.175	ENSKMAG00000014794	cpsf6	94	90.347	Kryptolebias_marmoratus
ENSTRUG00000016461	cpsf6	57	41.259	ENSLBEG00000000947	CPSF7	72	39.429	Labrus_bergylta
ENSTRUG00000016461	cpsf6	74	41.667	ENSLACG00000005542	CPSF7	69	41.667	Latimeria_chalumnae
ENSTRUG00000016461	cpsf6	67	88.623	ENSLOCG00000016190	cpsf6	63	90.361	Lepisosteus_oculatus
ENSTRUG00000016461	cpsf6	94	90.347	ENSMAMG00000010385	cpsf6	94	91.892	Mastacembelus_armatus
ENSTRUG00000016461	cpsf6	95	43.693	ENSMGAG00000004876	CPSF7	62	60.241	Meleagris_gallopavo
ENSTRUG00000016461	cpsf6	65	52.551	ENSMODG00000020364	CPSF7	72	57.386	Monodelphis_domestica
ENSTRUG00000016461	cpsf6	82	96.413	ENSMALG00000014908	cpsf6	89	96.413	Monopterus_albus
ENSTRUG00000016461	cpsf6	68	88.406	ENSMLUG00000028728	-	89	78.182	Myotis_lucifugus
ENSTRUG00000016461	cpsf6	65	55.208	ENSMEUG00000002261	CPSF7	71	56.250	Notamacropus_eugenii
ENSTRUG00000016461	cpsf6	94	71.495	ENSODEG00000004418	-	79	72.678	Octodon_degus
ENSTRUG00000016461	cpsf6	56	36.747	ENSORLG00000006495	CPSF7	69	39.773	Oryzias_latipes
ENSTRUG00000016461	cpsf6	56	36.747	ENSORLG00020012657	CPSF7	56	48.276	Oryzias_latipes_hni
ENSTRUG00000016461	cpsf6	70	37.768	ENSOMEG00000000539	CPSF7	73	39.884	Oryzias_melastigma
ENSTRUG00000016461	cpsf6	95	41.606	ENSOARG00000012937	CPSF7	64	54.545	Ovis_aries
ENSTRUG00000016461	cpsf6	65	54.167	ENSPPRG00000008538	CPSF7	71	55.114	Panthera_pardus
ENSTRUG00000016461	cpsf6	85	78.344	ENSPTIG00000004079	CPSF6	50	80.876	Panthera_tigris_altaica
ENSTRUG00000016461	cpsf6	94	79.350	ENSPANG00000011641	CPSF6	69	81.500	Papio_anubis
ENSTRUG00000016461	cpsf6	61	46.328	ENSPKIG00000018054	CPSF7	65	45.000	Paramormyrops_kingsleyae
ENSTRUG00000016461	cpsf6	52	85.614	ENSPKIG00000022613	CPSF6	94	85.135	Paramormyrops_kingsleyae
ENSTRUG00000016461	cpsf6	65	52.551	ENSPCIG00000002551	CPSF7	84	54.190	Phascolarctos_cinereus
ENSTRUG00000016461	cpsf6	55	45.752	ENSPNAG00000015073	CPSF7	67	45.122	Pygocentrus_nattereri
ENSTRUG00000016461	cpsf6	54	85.570	ENSPNAG00000024098	CPSF6	94	87.669	Pygocentrus_nattereri
ENSTRUG00000016461	cpsf6	77	51.397	ENSRBIG00000031429	CPSF7	81	59.864	Rhinopithecus_bieti
ENSTRUG00000016461	cpsf6	85	78.344	ENSSBOG00000010652	CPSF6	50	80.876	Saimiri_boliviensis_boliviensis
ENSTRUG00000016461	cpsf6	63	55.208	ENSSHAG00000011964	CPSF7	68	56.250	Sarcophilus_harrisii
ENSTRUG00000016461	cpsf6	62	43.017	ENSSFOG00015010288	cpsf7	69	45.139	Scleropages_formosus
ENSTRUG00000016461	cpsf6	94	91.313	ENSSDUG00000005024	cpsf6	94	92.857	Seriola_dumerili
ENSTRUG00000016461	cpsf6	94	91.313	ENSSLDG00000009042	cpsf6	94	92.857	Seriola_lalandi_dorsalis
ENSTRUG00000016461	cpsf6	85	81.890	ENSSARG00000006743	CPSF6	68	88.945	Sorex_araneus
ENSTRUG00000016461	cpsf6	77	51.955	ENSSSCG00000013083	CPSF7	75	64.122	Sus_scrofa
ENSTRUG00000016461	cpsf6	63	49.718	ENSTGUG00000006513	CPSF7	74	54.595	Taeniopygia_guttata
ENSTRUG00000016461	cpsf6	100	97.445	ENSTNIG00000007576	cpsf6	100	97.445	Tetraodon_nigroviridis
ENSTRUG00000016461	cpsf6	85	78.344	ENSUAMG00000023492	CPSF6	50	80.876	Ursus_americanus
ENSTRUG00000016461	cpsf6	85	78.344	ENSUMAG00000020779	CPSF6	50	80.876	Ursus_maritimus
ENSTRUG00000016461	cpsf6	77	51.955	ENSVVUG00000004939	CPSF7	79	60.544	Vulpes_vulpes
ENSTRUG00000016461	cpsf6	97	41.296	ENSXETG00000006715	cpsf7	54	45.763	Xenopus_tropicalis