EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000016682 (Gene tree)
Gene ID: 101073611
Gene Symbol: ddb1
Alias: zgc:63840
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 26455 bases
Position: chr13:10414560-10441014
Accession: 101073611
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000042678	CPSF_A	PF03178.15	5.3e-76	1	1
ENSTRUP00000042679	CPSF_A	PF03178.15	5.7e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000042823	-	2946	-	ENSTRUP00000042679	981 (aa)	-	H2V0E9
ENSTRUT00000042822	-	3465	XM_003969632	ENSTRUP00000042678	1090 (aa)	XP_003969681	H2V0E8

Gene Model

Click here to download ENSTRUG00000016682's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03420	Nucleotide excision repair	KEGG
tru04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000016682's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000016682	ddb1	98	90.214	ENSG00000167986	DDB1	100	95.413	Homo_sapiens
ENSTRUG00000016682	ddb1	98	97.670	ENSAPOG00000005036	ddb1	99	98.061	Acanthochromis_polyacanthus
ENSTRUG00000016682	ddb1	98	90.308	ENSAMEG00000016518	DDB1	94	90.308	Ailuropoda_melanoleuca
ENSTRUG00000016682	ddb1	100	94.705	ENSACIG00000020624	ddb1	99	97.551	Amphilophus_citrinellus
ENSTRUG00000016682	ddb1	98	97.577	ENSAOCG00000003066	ddb1	94	97.577	Amphiprion_ocellaris
ENSTRUG00000016682	ddb1	99	97.765	ENSAPEG00000000092	ddb1	99	97.765	Amphiprion_percula
ENSTRUG00000016682	ddb1	99	96.789	ENSATEG00000020571	ddb1	99	96.789	Anabas_testudineus
ENSTRUG00000016682	ddb1	97	88.952	ENSAPLG00000007174	DDB1	93	88.952	Anas_platyrhynchos
ENSTRUG00000016682	ddb1	98	89.469	ENSACAG00000017758	DDB1	94	89.469	Anolis_carolinensis
ENSTRUG00000016682	ddb1	98	90.214	ENSANAG00000021878	DDB1	94	90.214	Aotus_nancymaae
ENSTRUG00000016682	ddb1	98	96.925	ENSACLG00000012401	ddb1	99	96.756	Astatotilapia_calliptera
ENSTRUG00000016682	ddb1	98	90.214	ENSBTAG00000021569	DDB1	88	90.214	Bos_taurus
ENSTRUG00000016682	ddb1	100	36.128	WBGene00010890	ddb-1	94	37.284	Caenorhabditis_elegans
ENSTRUG00000016682	ddb1	98	90.214	ENSCJAG00000019319	DDB1	94	90.214	Callithrix_jacchus
ENSTRUG00000016682	ddb1	99	90.503	ENSCAFG00000016264	DDB1	99	90.503	Canis_familiaris
ENSTRUG00000016682	ddb1	99	90.503	ENSCAFG00020012722	DDB1	99	90.503	Canis_lupus_dingo
ENSTRUG00000016682	ddb1	98	90.214	ENSCHIG00000014969	DDB1	94	90.214	Capra_hircus
ENSTRUG00000016682	ddb1	98	89.842	ENSTSYG00000008027	DDB1	94	89.842	Carlito_syrichta
ENSTRUG00000016682	ddb1	97	90.114	ENSCAPG00000010786	DDB1	94	90.114	Cavia_aperea
ENSTRUG00000016682	ddb1	98	90.121	ENSCPOG00000009956	DDB1	94	90.121	Cavia_porcellus
ENSTRUG00000016682	ddb1	98	90.214	ENSCCAG00000035883	DDB1	94	90.214	Cebus_capucinus
ENSTRUG00000016682	ddb1	98	88.252	ENSCATG00000044495	DDB1	94	88.252	Cercocebus_atys
ENSTRUG00000016682	ddb1	98	90.214	ENSCLAG00000004126	DDB1	94	90.214	Chinchilla_lanigera
ENSTRUG00000016682	ddb1	98	90.214	ENSCSAG00000006392	DDB1	94	90.214	Chlorocebus_sabaeus
ENSTRUG00000016682	ddb1	85	89.415	ENSCHOG00000011377	DDB1	86	82.582	Choloepus_hoffmanni
ENSTRUG00000016682	ddb1	98	89.748	ENSCPBG00000017728	DDB1	94	89.748	Chrysemys_picta_bellii
ENSTRUG00000016682	ddb1	98	61.368	ENSCING00000007437	-	94	61.368	Ciona_intestinalis
ENSTRUG00000016682	ddb1	92	60.511	ENSCSAVG00000004783	-	100	60.285	Ciona_savignyi
ENSTRUG00000016682	ddb1	98	90.214	ENSCANG00000019948	DDB1	94	90.214	Colobus_angolensis_palliatus
ENSTRUG00000016682	ddb1	98	90.308	ENSCGRG00001016599	Ddb1	98	89.366	Cricetulus_griseus_chok1gshd
ENSTRUG00000016682	ddb1	98	90.308	ENSCGRG00000013427	Ddb1	94	90.308	Cricetulus_griseus_crigri
ENSTRUG00000016682	ddb1	97	97.078	ENSCSEG00000012499	ddb1	99	95.648	Cynoglossus_semilaevis
ENSTRUG00000016682	ddb1	99	96.108	ENSCVAG00000019531	ddb1	99	96.108	Cyprinodon_variegatus
ENSTRUG00000016682	ddb1	98	91.045	ENSDARG00000074431	ddb1	94	91.045	Danio_rerio
ENSTRUG00000016682	ddb1	99	90.503	ENSDNOG00000014884	DDB1	97	90.503	Dasypus_novemcinctus
ENSTRUG00000016682	ddb1	81	94.091	ENSDORG00000000127	Ddb1	93	94.091	Dipodomys_ordii
ENSTRUG00000016682	ddb1	99	60.407	FBgn0260962	pic	95	60.351	Drosophila_melanogaster
ENSTRUG00000016682	ddb1	67	94.094	ENSETEG00000001053	-	64	94.094	Echinops_telfairi
ENSTRUG00000016682	ddb1	91	80.674	ENSEBUG00000014593	ddb1	97	83.802	Eptatretus_burgeri
ENSTRUG00000016682	ddb1	98	90.308	ENSEASG00005008184	DDB1	94	90.308	Equus_asinus_asinus
ENSTRUG00000016682	ddb1	98	90.308	ENSECAG00000012136	DDB1	94	90.308	Equus_caballus
ENSTRUG00000016682	ddb1	90	85.490	ENSEEUG00000003194	DDB1	85	86.027	Erinaceus_europaeus
ENSTRUG00000016682	ddb1	98	95.620	ENSELUG00000023868	ddb1	94	95.620	Esox_lucius
ENSTRUG00000016682	ddb1	98	90.308	ENSFCAG00000029716	DDB1	94	90.308	Felis_catus
ENSTRUG00000016682	ddb1	99	89.259	ENSFALG00000011981	DDB1	94	89.259	Ficedula_albicollis
ENSTRUG00000016682	ddb1	98	90.121	ENSFDAG00000005128	DDB1	94	90.121	Fukomys_damarensis
ENSTRUG00000016682	ddb1	90	97.895	ENSFHEG00000022133	ddb1	94	95.652	Fundulus_heteroclitus
ENSTRUG00000016682	ddb1	82	97.324	ENSGMOG00000019386	ddb1	94	97.324	Gadus_morhua
ENSTRUG00000016682	ddb1	98	89.655	ENSGALG00000042333	DDB1	94	89.655	Gallus_gallus
ENSTRUG00000016682	ddb1	99	96.942	ENSGAFG00000013142	ddb1	99	96.942	Gambusia_affinis
ENSTRUG00000016682	ddb1	98	97.196	ENSGACG00000017182	ddb1	98	97.196	Gasterosteus_aculeatus
ENSTRUG00000016682	ddb1	93	89.479	ENSGAGG00000014124	DDB1	94	89.479	Gopherus_agassizii
ENSTRUG00000016682	ddb1	98	90.214	ENSGGOG00000004052	DDB1	94	90.214	Gorilla_gorilla
ENSTRUG00000016682	ddb1	98	96.925	ENSHBUG00000008873	ddb1	94	96.925	Haplochromis_burtoni
ENSTRUG00000016682	ddb1	98	90.121	ENSHGLG00000018430	DDB1	94	90.121	Heterocephalus_glaber_female
ENSTRUG00000016682	ddb1	98	89.096	ENSHGLG00100014475	DDB1	94	89.096	Heterocephalus_glaber_male
ENSTRUG00000016682	ddb1	99	96.044	ENSHCOG00000018670	ddb1	99	96.044	Hippocampus_comes
ENSTRUG00000016682	ddb1	99	94.620	ENSIPUG00000005612	DDB1	98	94.620	Ictalurus_punctatus
ENSTRUG00000016682	ddb1	98	90.214	ENSSTOG00000007552	DDB1	94	90.214	Ictidomys_tridecemlineatus
ENSTRUG00000016682	ddb1	98	90.214	ENSJJAG00000017769	Ddb1	94	90.214	Jaculus_jaculus
ENSTRUG00000016682	ddb1	99	97.300	ENSKMAG00000002315	ddb1	99	97.300	Kryptolebias_marmoratus
ENSTRUG00000016682	ddb1	98	95.223	ENSLBEG00000017065	ddb1	99	98.127	Labrus_bergylta
ENSTRUG00000016682	ddb1	99	89.860	ENSLACG00000017611	DDB1	97	89.848	Latimeria_chalumnae
ENSTRUG00000016682	ddb1	89	97.196	ENSLOCG00000000012	ddb1	93	97.196	Lepisosteus_oculatus
ENSTRUG00000016682	ddb1	98	90.121	ENSLAFG00000011513	DDB1	94	90.121	Loxodonta_africana
ENSTRUG00000016682	ddb1	98	90.214	ENSMFAG00000042035	DDB1	94	90.214	Macaca_fascicularis
ENSTRUG00000016682	ddb1	98	90.214	ENSMMUG00000002691	DDB1	100	90.789	Macaca_mulatta
ENSTRUG00000016682	ddb1	98	90.214	ENSMNEG00000031559	DDB1	94	90.214	Macaca_nemestrina
ENSTRUG00000016682	ddb1	98	90.214	ENSMLEG00000044136	DDB1	98	88.858	Mandrillus_leucophaeus
ENSTRUG00000016682	ddb1	98	97.763	ENSMAMG00000014372	ddb1	94	97.763	Mastacembelus_armatus
ENSTRUG00000016682	ddb1	98	96.831	ENSMZEG00005013835	ddb1	94	96.831	Maylandia_zebra
ENSTRUG00000016682	ddb1	93	88.724	ENSMGAG00000004990	DDB1	94	88.724	Meleagris_gallopavo
ENSTRUG00000016682	ddb1	98	90.308	ENSMAUG00000012926	Ddb1	94	90.308	Mesocricetus_auratus
ENSTRUG00000016682	ddb1	98	90.401	ENSMICG00000013703	DDB1	94	90.401	Microcebus_murinus
ENSTRUG00000016682	ddb1	98	90.214	ENSMOCG00000020499	Ddb1	94	90.214	Microtus_ochrogaster
ENSTRUG00000016682	ddb1	100	95.316	ENSMMOG00000001758	ddb1	99	98.163	Mola_mola
ENSTRUG00000016682	ddb1	99	81.818	ENSMODG00000020353	DDB1	94	81.818	Monodelphis_domestica
ENSTRUG00000016682	ddb1	98	97.577	ENSMALG00000014071	ddb1	94	97.577	Monopterus_albus
ENSTRUG00000016682	ddb1	98	90.308	MGP_CAROLIEiJ_G0022695	Ddb1	94	90.308	Mus_caroli
ENSTRUG00000016682	ddb1	98	90.308	ENSMUSG00000024740	Ddb1	94	90.308	Mus_musculus
ENSTRUG00000016682	ddb1	98	90.308	MGP_PahariEiJ_G0014189	Ddb1	94	90.308	Mus_pahari
ENSTRUG00000016682	ddb1	98	90.401	MGP_SPRETEiJ_G0023609	Ddb1	94	90.401	Mus_spretus
ENSTRUG00000016682	ddb1	99	86.748	ENSMPUG00000014200	DDB1	94	87.232	Mustela_putorius_furo
ENSTRUG00000016682	ddb1	98	90.401	ENSMLUG00000013232	DDB1	94	90.401	Myotis_lucifugus
ENSTRUG00000016682	ddb1	98	90.214	ENSNGAG00000009384	Ddb1	94	90.214	Nannospalax_galili
ENSTRUG00000016682	ddb1	98	97.018	ENSNBRG00000019581	ddb1	94	97.018	Neolamprologus_brichardi
ENSTRUG00000016682	ddb1	98	87.697	ENSNLEG00000002022	DDB1	94	87.697	Nomascus_leucogenys
ENSTRUG00000016682	ddb1	88	99.194	ENSMEUG00000001099	DDB1	87	94.931	Notamacropus_eugenii
ENSTRUG00000016682	ddb1	89	83.372	ENSOPRG00000008254	DDB1	85	81.120	Ochotona_princeps
ENSTRUG00000016682	ddb1	99	89.777	ENSODEG00000002419	DDB1	94	90.214	Octodon_degus
ENSTRUG00000016682	ddb1	98	97.018	ENSONIG00000005804	ddb1	94	97.018	Oreochromis_niloticus
ENSTRUG00000016682	ddb1	89	89.534	ENSOANG00000004897	DDB1	94	89.534	Ornithorhynchus_anatinus
ENSTRUG00000016682	ddb1	98	90.308	ENSOCUG00000001667	DDB1	94	90.308	Oryctolagus_cuniculus
ENSTRUG00000016682	ddb1	99	96.927	ENSORLG00000001399	ddb1	98	96.638	Oryzias_latipes
ENSTRUG00000016682	ddb1	99	96.834	ENSORLG00020001277	ddb1	95	96.834	Oryzias_latipes_hni
ENSTRUG00000016682	ddb1	99	96.927	ENSORLG00015002080	ddb1	99	96.927	Oryzias_latipes_hsok
ENSTRUG00000016682	ddb1	99	97.207	ENSOMEG00000006181	ddb1	97	97.207	Oryzias_melastigma
ENSTRUG00000016682	ddb1	98	90.401	ENSOGAG00000016103	DDB1	94	90.401	Otolemur_garnettii
ENSTRUG00000016682	ddb1	98	90.214	ENSOARG00000011716	DDB1	93	90.214	Ovis_aries
ENSTRUG00000016682	ddb1	98	90.214	ENSPPAG00000035343	DDB1	94	90.214	Pan_paniscus
ENSTRUG00000016682	ddb1	98	90.308	ENSPPRG00000013300	DDB1	94	90.308	Panthera_pardus
ENSTRUG00000016682	ddb1	97	90.304	ENSPTIG00000006909	DDB1	92	90.304	Panthera_tigris_altaica
ENSTRUG00000016682	ddb1	98	90.214	ENSPTRG00000003737	DDB1	94	90.214	Pan_troglodytes
ENSTRUG00000016682	ddb1	98	90.214	ENSPANG00000000242	DDB1	94	90.214	Papio_anubis
ENSTRUG00000016682	ddb1	99	95.265	ENSPKIG00000019213	ddb1	94	95.265	Paramormyrops_kingsleyae
ENSTRUG00000016682	ddb1	97	89.120	ENSPSIG00000013275	DDB1	94	89.120	Pelodiscus_sinensis
ENSTRUG00000016682	ddb1	100	95.214	ENSPMGG00000021179	ddb1	99	98.061	Periophthalmus_magnuspinnatus
ENSTRUG00000016682	ddb1	98	90.308	ENSPEMG00000012241	Ddb1	94	90.308	Peromyscus_maniculatus_bairdii
ENSTRUG00000016682	ddb1	98	82.830	ENSPMAG00000008479	ddb1	100	85.855	Petromyzon_marinus
ENSTRUG00000016682	ddb1	98	90.587	ENSPCIG00000002643	DDB1	94	90.587	Phascolarctos_cinereus
ENSTRUG00000016682	ddb1	98	97.386	ENSPFOG00000002768	ddb1	94	97.386	Poecilia_formosa
ENSTRUG00000016682	ddb1	99	96.327	ENSPLAG00000017227	ddb1	99	96.327	Poecilia_latipinna
ENSTRUG00000016682	ddb1	99	96.327	ENSPMEG00000011398	ddb1	99	96.327	Poecilia_mexicana
ENSTRUG00000016682	ddb1	99	97.393	ENSPREG00000004440	ddb1	97	97.393	Poecilia_reticulata
ENSTRUG00000016682	ddb1	98	86.610	ENSPPYG00000003193	DDB1	93	86.610	Pongo_abelii
ENSTRUG00000016682	ddb1	82	88.571	ENSPCAG00000011040	DDB1	79	88.571	Procavia_capensis
ENSTRUG00000016682	ddb1	99	89.483	ENSPCOG00000015176	DDB1	95	89.483	Propithecus_coquereli
ENSTRUG00000016682	ddb1	98	90.121	ENSPVAG00000003847	DDB1	94	90.121	Pteropus_vampyrus
ENSTRUG00000016682	ddb1	99	95.450	ENSPNAG00000006635	ddb1	97	95.450	Pygocentrus_nattereri
ENSTRUG00000016682	ddb1	98	90.401	ENSRNOG00000020715	Ddb1	94	90.401	Rattus_norvegicus
ENSTRUG00000016682	ddb1	98	90.214	ENSRBIG00000033611	DDB1	95	90.214	Rhinopithecus_bieti
ENSTRUG00000016682	ddb1	98	90.214	ENSRROG00000041407	DDB1	94	90.214	Rhinopithecus_roxellana
ENSTRUG00000016682	ddb1	98	90.308	ENSSBOG00000019775	DDB1	94	90.308	Saimiri_boliviensis_boliviensis
ENSTRUG00000016682	ddb1	92	87.737	ENSSHAG00000011600	DDB1	94	87.737	Sarcophilus_harrisii
ENSTRUG00000016682	ddb1	99	95.251	ENSSFOG00015011151	ddb1	97	95.251	Scleropages_formosus
ENSTRUG00000016682	ddb1	98	97.856	ENSSMAG00000009495	ddb1	94	97.856	Scophthalmus_maximus
ENSTRUG00000016682	ddb1	98	98.043	ENSSDUG00000004642	ddb1	94	98.043	Seriola_dumerili
ENSTRUG00000016682	ddb1	98	98.043	ENSSLDG00000015804	ddb1	94	98.043	Seriola_lalandi_dorsalis
ENSTRUG00000016682	ddb1	71	94.340	ENSSARG00000003290	-	71	94.340	Sorex_araneus
ENSTRUG00000016682	ddb1	98	89.655	ENSSPUG00000019338	DDB1	94	89.655	Sphenodon_punctatus
ENSTRUG00000016682	ddb1	99	97.952	ENSSPAG00000009888	ddb1	99	97.952	Stegastes_partitus
ENSTRUG00000016682	ddb1	98	89.897	ENSSSCG00000013094	DDB1	94	89.897	Sus_scrofa
ENSTRUG00000016682	ddb1	98	89.869	ENSTGUG00000006414	DDB1	94	89.869	Taeniopygia_guttata
ENSTRUG00000016682	ddb1	86	92.193	ENSTNIG00000009565	ddb1	93	92.193	Tetraodon_nigroviridis
ENSTRUG00000016682	ddb1	90	84.692	ENSTTRG00000011055	DDB1	88	84.692	Tursiops_truncatus
ENSTRUG00000016682	ddb1	99	90.503	ENSUAMG00000017793	DDB1	93	90.503	Ursus_americanus
ENSTRUG00000016682	ddb1	99	90.503	ENSUMAG00000011788	DDB1	98	90.503	Ursus_maritimus
ENSTRUG00000016682	ddb1	94	82.359	ENSVPAG00000007963	DDB1	86	85.374	Vicugna_pacos
ENSTRUG00000016682	ddb1	98	90.308	ENSVVUG00000004987	DDB1	94	90.308	Vulpes_vulpes
ENSTRUG00000016682	ddb1	98	87.744	ENSXETG00000008820	ddb1	94	87.744	Xenopus_tropicalis
ENSTRUG00000016682	ddb1	100	94.603	ENSXCOG00000013956	ddb1	99	97.449	Xiphophorus_couchianus
ENSTRUG00000016682	ddb1	99	96.849	ENSXMAG00000000022	ddb1	99	96.849	Xiphophorus_maculatus