EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000017058 (Gene tree)
Gene ID: 101066595
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1B-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 6268 bases
Position: chr15:10728827-10735094
Accession: 101066595
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000043700	RRM_1	PF00076.22	4.4e-32	1	2
ENSTRUP00000043700	RRM_1	PF00076.22	4.4e-32	2	2
ENSTRUP00000043699	RRM_1	PF00076.22	4.5e-32	1	2
ENSTRUP00000043699	RRM_1	PF00076.22	4.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000043845	-	717	XM_003971293	ENSTRUP00000043699	238 (aa)	XP_003971342	H2V3B7
ENSTRUT00000043846	-	711	-	ENSTRUP00000043700	236 (aa)	-	H2V3B8

Gene Model

Click here to download ENSTRUG00000017058's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG
tru05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000017058's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000017058	-	79	85.938	ENSTRUG00000003691	srsf1a	78	84.896
ENSTRUG00000017058	-	67	45.062	ENSTRUG00000011891	srsf4	58	38.043
ENSTRUG00000017058	-	74	47.283	ENSTRUG00000012723	srsf9	71	45.109
ENSTRUG00000017058	-	86	38.235	ENSTRUG00000022908	srsf5a	73	36.245
ENSTRUG00000017058	-	81	42.029	ENSTRUG00000017811	srsf5b	65	40.777

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000017058	-	75	85.870	ENSACIG00000002623	-	96	84.783	Amphilophus_citrinellus
ENSTRUG00000017058	-	95	78.926	ENSACLG00000021693	-	81	80.392	Astatotilapia_calliptera
ENSTRUG00000017058	-	79	86.911	ENSACLG00000005676	-	78	87.435	Astatotilapia_calliptera
ENSTRUG00000017058	-	77	60.714	WBGene00004700	rsp-3	76	60.714	Caenorhabditis_elegans
ENSTRUG00000017058	-	53	67.460	ENSCING00000000257	-	75	67.460	Ciona_intestinalis
ENSTRUG00000017058	-	75	72.778	ENSCING00000007375	-	76	71.508	Ciona_intestinalis
ENSTRUG00000017058	-	69	60.606	ENSCSAVG00000003567	-	76	66.667	Ciona_savignyi
ENSTRUG00000017058	-	75	71.667	ENSCSAVG00000006093	-	91	70.391	Ciona_savignyi
ENSTRUG00000017058	-	75	68.280	FBgn0283477	SF2	73	67.204	Drosophila_melanogaster
ENSTRUG00000017058	-	97	74.678	ENSEBUG00000009582	-	84	77.083	Eptatretus_burgeri
ENSTRUG00000017058	-	80	84.422	ENSFHEG00000017425	-	98	82.888	Fundulus_heteroclitus
ENSTRUG00000017058	-	75	85.635	ENSGMOG00000010606	-	97	84.530	Gadus_morhua
ENSTRUG00000017058	-	82	84.314	ENSGAFG00000000609	-	80	84.000	Gambusia_affinis
ENSTRUG00000017058	-	79	86.979	ENSGAFG00000012721	-	78	85.938	Gambusia_affinis
ENSTRUG00000017058	-	74	86.592	ENSGACG00000011094	-	96	84.916	Gasterosteus_aculeatus
ENSTRUG00000017058	-	50	65.254	ENSHBUG00000015600	-	91	65.254	Haplochromis_burtoni
ENSTRUG00000017058	-	94	79.079	ENSHBUG00000015576	-	81	80.788	Haplochromis_burtoni
ENSTRUG00000017058	-	79	83.158	ENSHCOG00000008016	-	77	81.579	Hippocampus_comes
ENSTRUG00000017058	-	97	80.658	ENSMFAG00000034223	-	65	83.938	Macaca_fascicularis
ENSTRUG00000017058	-	79	86.911	ENSMZEG00005007947	-	78	87.435	Maylandia_zebra
ENSTRUG00000017058	-	80	82.178	ENSMZEG00005019071	-	99	80.423	Maylandia_zebra
ENSTRUG00000017058	-	80	89.286	ENSMMOG00000018849	-	79	88.265	Mola_mola
ENSTRUG00000017058	-	79	86.911	ENSNBRG00000019981	-	78	87.435	Neolamprologus_brichardi
ENSTRUG00000017058	-	80	86.387	ENSNBRG00000008134	-	77	85.864	Neolamprologus_brichardi
ENSTRUG00000017058	-	67	66.038	ENSOPRG00000004745	-	96	66.038	Ochotona_princeps
ENSTRUG00000017058	-	80	81.463	ENSONIG00000004857	-	81	81.951	Oreochromis_niloticus
ENSTRUG00000017058	-	54	85.294	ENSOANG00000007320	-	53	93.023	Ornithorhynchus_anatinus
ENSTRUG00000017058	-	70	51.497	ENSOCUG00000026856	-	96	50.898	Oryctolagus_cuniculus
ENSTRUG00000017058	-	80	84.772	ENSORLG00000005314	-	77	85.787	Oryzias_latipes
ENSTRUG00000017058	-	80	84.772	ENSORLG00015015497	-	77	85.787	Oryzias_latipes_hsok
ENSTRUG00000017058	-	80	83.663	ENSOMEG00000017711	-	77	84.653	Oryzias_melastigma
ENSTRUG00000017058	-	74	87.151	ENSPLAG00000019613	-	72	85.475	Poecilia_latipinna
ENSTRUG00000017058	-	79	85.641	ENSPLAG00000019553	-	92	83.607	Poecilia_latipinna
ENSTRUG00000017058	-	82	85.149	ENSPREG00000016792	-	80	84.848	Poecilia_reticulata
ENSTRUG00000017058	-	79	86.911	ENSPNYG00000017115	-	78	87.435	Pundamilia_nyererei
ENSTRUG00000017058	-	80	81.863	ENSPNYG00000020651	-	78	82.843	Pundamilia_nyererei
ENSTRUG00000017058	-	84	86.765	ENSSFOG00015004989	-	70	86.458	Scleropages_formosus
ENSTRUG00000017058	-	79	82.212	ENSSDUG00000003887	-	79	80.769	Seriola_dumerili
ENSTRUG00000017058	-	94	97.321	ENSTNIG00000009993	-	81	96.875	Tetraodon_nigroviridis
ENSTRUG00000017058	-	79	85.641	ENSXCOG00000009643	-	79	84.103	Xiphophorus_couchianus
ENSTRUG00000017058	-	82	87.629	ENSXCOG00000017888	-	79	86.316	Xiphophorus_couchianus
ENSTRUG00000017058	-	82	84.729	ENSXMAG00000010797	-	80	84.422	Xiphophorus_maculatus