EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000017749 (Gene tree)
Gene ID: -
Gene Symbol: lsm5
Alias: zgc:171959
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 1138 bases
Position: chr10:8529036-8530173
Accession: 101062322
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000045498	LSM	PF01423.22	1.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000045652	-	390	XM_003968161	ENSTRUP00000045498	129 (aa)	XP_003968210	H2V8F9

Gene Model

Click here to download ENSTRUG00000017749's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000017749's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000017749	lsm5	64	87.952	ENSG00000106355	LSM5	86	87.952	Homo_sapiens
ENSTRUG00000017749	lsm5	69	84.783	ENSAPOG00000011743	LSM5	98	84.783	Acanthochromis_polyacanthus
ENSTRUG00000017749	lsm5	69	84.783	ENSAPOG00000020779	LSM5	96	87.356	Acanthochromis_polyacanthus
ENSTRUG00000017749	lsm5	64	87.952	ENSAMEG00000006700	LSM5	86	87.952	Ailuropoda_melanoleuca
ENSTRUG00000017749	lsm5	65	51.190	ENSACIG00000019185	lsm5	84	51.190	Amphilophus_citrinellus
ENSTRUG00000017749	lsm5	65	87.356	ENSAOCG00000001636	lsm5	90	87.356	Amphiprion_ocellaris
ENSTRUG00000017749	lsm5	65	87.356	ENSAPEG00000008151	lsm5	90	87.356	Amphiprion_percula
ENSTRUG00000017749	lsm5	89	71.901	ENSATEG00000020470	lsm5	85	71.901	Anabas_testudineus
ENSTRUG00000017749	lsm5	56	87.500	ENSAPLG00000008171	LSM5	91	87.500	Anas_platyrhynchos
ENSTRUG00000017749	lsm5	64	66.265	ENSANAG00000037758	-	84	66.265	Aotus_nancymaae
ENSTRUG00000017749	lsm5	64	89.157	ENSANAG00000034409	-	86	89.157	Aotus_nancymaae
ENSTRUG00000017749	lsm5	64	85.542	ENSANAG00000024192	-	81	85.542	Aotus_nancymaae
ENSTRUG00000017749	lsm5	65	89.286	ENSACLG00000012891	lsm5	90	89.286	Astatotilapia_calliptera
ENSTRUG00000017749	lsm5	64	78.313	ENSAMXG00000035543	lsm5	86	78.313	Astyanax_mexicanus
ENSTRUG00000017749	lsm5	64	87.952	ENSBTAG00000002332	LSM5	86	87.952	Bos_taurus
ENSTRUG00000017749	lsm5	64	66.265	WBGene00003079	lsm-5	86	66.265	Caenorhabditis_elegans
ENSTRUG00000017749	lsm5	64	87.952	ENSCJAG00000047379	LSM5	67	95.349	Callithrix_jacchus
ENSTRUG00000017749	lsm5	64	75.904	ENSCJAG00000005678	-	88	75.904	Callithrix_jacchus
ENSTRUG00000017749	lsm5	63	88.889	ENSCAFG00000019261	-	84	88.889	Canis_familiaris
ENSTRUG00000017749	lsm5	64	87.952	ENSCAFG00020004946	LSM5	86	87.952	Canis_lupus_dingo
ENSTRUG00000017749	lsm5	64	85.542	ENSCHIG00000004079	-	86	85.542	Capra_hircus
ENSTRUG00000017749	lsm5	58	69.333	ENSCHIG00000021428	-	84	70.886	Capra_hircus
ENSTRUG00000017749	lsm5	64	87.952	ENSCHIG00000024539	LSM5	86	87.952	Capra_hircus
ENSTRUG00000017749	lsm5	64	68.675	ENSTSYG00000026530	-	77	68.675	Carlito_syrichta
ENSTRUG00000017749	lsm5	64	63.855	ENSTSYG00000036637	-	82	63.855	Carlito_syrichta
ENSTRUG00000017749	lsm5	64	87.952	ENSTSYG00000006449	-	86	87.952	Carlito_syrichta
ENSTRUG00000017749	lsm5	64	74.699	ENSTSYG00000028728	-	85	74.699	Carlito_syrichta
ENSTRUG00000017749	lsm5	54	88.571	ENSCAPG00000006980	LSM5	87	88.571	Cavia_aperea
ENSTRUG00000017749	lsm5	64	87.952	ENSCPOG00000036386	LSM5	86	87.952	Cavia_porcellus
ENSTRUG00000017749	lsm5	64	56.627	ENSCCAG00000037334	-	83	56.627	Cebus_capucinus
ENSTRUG00000017749	lsm5	64	86.747	ENSCCAG00000000821	-	86	86.747	Cebus_capucinus
ENSTRUG00000017749	lsm5	64	87.952	ENSCCAG00000037808	-	86	87.952	Cebus_capucinus
ENSTRUG00000017749	lsm5	64	67.470	ENSCCAG00000032792	-	84	67.470	Cebus_capucinus
ENSTRUG00000017749	lsm5	64	85.542	ENSCCAG00000032123	-	86	85.542	Cebus_capucinus
ENSTRUG00000017749	lsm5	64	78.313	ENSCATG00000014790	-	90	84.211	Cercocebus_atys
ENSTRUG00000017749	lsm5	64	87.952	ENSCATG00000040218	LSM5	86	87.952	Cercocebus_atys
ENSTRUG00000017749	lsm5	64	87.952	ENSCLAG00000000202	LSM5	86	87.952	Chinchilla_lanigera
ENSTRUG00000017749	lsm5	64	75.904	ENSCLAG00000005062	-	77	75.904	Chinchilla_lanigera
ENSTRUG00000017749	lsm5	59	88.158	ENSCHOG00000005335	LSM5	93	88.158	Choloepus_hoffmanni
ENSTRUG00000017749	lsm5	64	87.952	ENSCPBG00000013685	LSM5	86	87.952	Chrysemys_picta_bellii
ENSTRUG00000017749	lsm5	64	80.488	ENSCING00000020625	-	87	80.488	Ciona_intestinalis
ENSTRUG00000017749	lsm5	64	80.488	ENSCSAVG00000001439	-	88	80.488	Ciona_savignyi
ENSTRUG00000017749	lsm5	64	87.952	ENSCANG00000039909	LSM5	86	87.952	Colobus_angolensis_palliatus
ENSTRUG00000017749	lsm5	64	87.952	ENSCGRG00001015461	Lsm5	86	87.952	Cricetulus_griseus_chok1gshd
ENSTRUG00000017749	lsm5	55	87.324	ENSCGRG00000007677	Lsm5	88	87.324	Cricetulus_griseus_crigri
ENSTRUG00000017749	lsm5	64	90.244	ENSCVAG00000004262	lsm5	85	90.244	Cyprinodon_variegatus
ENSTRUG00000017749	lsm5	67	84.884	ENSDARG00000071573	lsm5	89	84.884	Danio_rerio
ENSTRUG00000017749	lsm5	64	77.108	ENSDNOG00000049495	-	86	77.108	Dasypus_novemcinctus
ENSTRUG00000017749	lsm5	70	84.444	ENSDNOG00000034958	LSM5	96	84.444	Dasypus_novemcinctus
ENSTRUG00000017749	lsm5	64	87.952	ENSDORG00000009422	Lsm5	86	87.952	Dipodomys_ordii
ENSTRUG00000017749	lsm5	64	74.699	FBgn0035675	CG6610	86	74.699	Drosophila_melanogaster
ENSTRUG00000017749	lsm5	62	60.000	ENSETEG00000000777	-	85	60.000	Echinops_telfairi
ENSTRUG00000017749	lsm5	64	66.265	ENSETEG00000001469	-	84	66.265	Echinops_telfairi
ENSTRUG00000017749	lsm5	64	87.952	ENSETEG00000018068	LSM5	86	87.952	Echinops_telfairi
ENSTRUG00000017749	lsm5	53	70.588	ENSETEG00000016074	-	81	70.588	Echinops_telfairi
ENSTRUG00000017749	lsm5	64	69.512	ENSETEG00000010651	-	84	69.512	Echinops_telfairi
ENSTRUG00000017749	lsm5	67	83.721	ENSEBUG00000008540	lsm5	89	83.721	Eptatretus_burgeri
ENSTRUG00000017749	lsm5	64	87.952	ENSEASG00005003500	LSM5	86	87.952	Equus_asinus_asinus
ENSTRUG00000017749	lsm5	64	74.699	ENSECAG00000018445	LSM5	84	74.699	Equus_caballus
ENSTRUG00000017749	lsm5	64	89.024	ENSELUG00000007792	lsm5	85	89.024	Esox_lucius
ENSTRUG00000017749	lsm5	64	87.952	ENSFCAG00000000230	LSM5	86	87.952	Felis_catus
ENSTRUG00000017749	lsm5	56	87.500	ENSFALG00000001892	LSM5	81	87.500	Ficedula_albicollis
ENSTRUG00000017749	lsm5	63	61.728	ENSFDAG00000008685	-	90	61.728	Fukomys_damarensis
ENSTRUG00000017749	lsm5	64	87.952	ENSFDAG00000008767	LSM5	86	87.952	Fukomys_damarensis
ENSTRUG00000017749	lsm5	67	70.455	ENSFHEG00000004011	lsm5	89	70.455	Fundulus_heteroclitus
ENSTRUG00000017749	lsm5	64	90.244	ENSGMOG00000018235	lsm5	86	90.244	Gadus_morhua
ENSTRUG00000017749	lsm5	64	87.952	ENSGALG00000041625	LSM5	86	87.952	Gallus_gallus
ENSTRUG00000017749	lsm5	65	87.356	ENSGACG00000005528	lsm5	90	87.356	Gasterosteus_aculeatus
ENSTRUG00000017749	lsm5	81	74.038	ENSGAGG00000015593	LSM5	86	87.952	Gopherus_agassizii
ENSTRUG00000017749	lsm5	64	87.952	ENSGGOG00000043469	LSM5	86	87.952	Gorilla_gorilla
ENSTRUG00000017749	lsm5	65	89.286	ENSHBUG00000013773	lsm5	90	89.286	Haplochromis_burtoni
ENSTRUG00000017749	lsm5	64	87.952	ENSHGLG00000011765	LSM5	86	87.952	Heterocephalus_glaber_female
ENSTRUG00000017749	lsm5	64	84.337	ENSHGLG00100015610	LSM5	85	84.337	Heterocephalus_glaber_male
ENSTRUG00000017749	lsm5	64	51.220	ENSHCOG00000008288	lsm5	76	51.220	Hippocampus_comes
ENSTRUG00000017749	lsm5	64	87.805	ENSIPUG00000021095	LSM5	85	87.805	Ictalurus_punctatus
ENSTRUG00000017749	lsm5	64	87.952	ENSSTOG00000012662	LSM5	86	87.952	Ictidomys_tridecemlineatus
ENSTRUG00000017749	lsm5	62	73.171	ENSSTOG00000033886	-	87	73.171	Ictidomys_tridecemlineatus
ENSTRUG00000017749	lsm5	62	83.750	ENSJJAG00000004475	-	95	83.750	Jaculus_jaculus
ENSTRUG00000017749	lsm5	64	62.651	ENSJJAG00000016144	-	76	62.651	Jaculus_jaculus
ENSTRUG00000017749	lsm5	64	87.952	ENSJJAG00000012145	-	86	87.952	Jaculus_jaculus
ENSTRUG00000017749	lsm5	65	87.356	ENSKMAG00000021861	lsm5	90	87.356	Kryptolebias_marmoratus
ENSTRUG00000017749	lsm5	64	91.463	ENSLBEG00000009235	LSM5	61	91.463	Labrus_bergylta
ENSTRUG00000017749	lsm5	64	89.157	ENSLACG00000022448	LSM5	86	89.157	Latimeria_chalumnae
ENSTRUG00000017749	lsm5	64	89.024	ENSLOCG00000012903	lsm5	85	89.024	Lepisosteus_oculatus
ENSTRUG00000017749	lsm5	64	62.195	ENSLAFG00000027938	-	82	62.195	Loxodonta_africana
ENSTRUG00000017749	lsm5	64	87.952	ENSLAFG00000029579	LSM5	86	87.952	Loxodonta_africana
ENSTRUG00000017749	lsm5	64	85.542	ENSMFAG00000030152	-	86	85.542	Macaca_fascicularis
ENSTRUG00000017749	lsm5	64	87.952	ENSMFAG00000038508	LSM5	86	87.952	Macaca_fascicularis
ENSTRUG00000017749	lsm5	64	78.313	ENSMMUG00000039822	-	85	78.313	Macaca_mulatta
ENSTRUG00000017749	lsm5	64	85.542	ENSMMUG00000030131	-	86	85.542	Macaca_mulatta
ENSTRUG00000017749	lsm5	64	87.952	ENSMNEG00000015331	LSM5	86	87.952	Macaca_nemestrina
ENSTRUG00000017749	lsm5	64	85.542	ENSMNEG00000037935	-	86	85.542	Macaca_nemestrina
ENSTRUG00000017749	lsm5	64	87.952	ENSMLEG00000024945	LSM5	86	87.952	Mandrillus_leucophaeus
ENSTRUG00000017749	lsm5	64	77.108	ENSMLEG00000034037	-	86	77.108	Mandrillus_leucophaeus
ENSTRUG00000017749	lsm5	65	82.759	ENSMAMG00000012869	lsm5	90	82.759	Mastacembelus_armatus
ENSTRUG00000017749	lsm5	65	89.286	ENSMZEG00005019554	lsm5	90	89.286	Maylandia_zebra
ENSTRUG00000017749	lsm5	64	87.952	ENSMGAG00000012117	LSM5	86	87.952	Meleagris_gallopavo
ENSTRUG00000017749	lsm5	64	87.952	ENSMAUG00000012222	Lsm5	86	87.952	Mesocricetus_auratus
ENSTRUG00000017749	lsm5	64	86.747	ENSMAUG00000008132	-	86	86.747	Mesocricetus_auratus
ENSTRUG00000017749	lsm5	64	65.060	ENSMICG00000033928	-	81	65.060	Microcebus_murinus
ENSTRUG00000017749	lsm5	64	87.952	ENSMICG00000005353	LSM5	86	87.952	Microcebus_murinus
ENSTRUG00000017749	lsm5	64	87.952	ENSMOCG00000012018	Lsm5	86	87.952	Microtus_ochrogaster
ENSTRUG00000017749	lsm5	56	88.889	ENSMMOG00000004026	lsm5	77	88.889	Mola_mola
ENSTRUG00000017749	lsm5	64	87.952	MGP_CAROLIEiJ_G0028421	Lsm5	100	95.238	Mus_caroli
ENSTRUG00000017749	lsm5	64	87.952	ENSMUSG00000091625	Lsm5	100	95.238	Mus_musculus
ENSTRUG00000017749	lsm5	64	87.952	MGP_PahariEiJ_G0022171	Lsm5	100	95.238	Mus_pahari
ENSTRUG00000017749	lsm5	64	87.952	MGP_SPRETEiJ_G0029423	Lsm5	100	95.238	Mus_spretus
ENSTRUG00000017749	lsm5	64	87.952	ENSMLUG00000017028	LSM5	86	87.952	Myotis_lucifugus
ENSTRUG00000017749	lsm5	64	68.293	ENSNGAG00000022569	-	81	68.293	Nannospalax_galili
ENSTRUG00000017749	lsm5	64	78.313	ENSNGAG00000017707	-	85	78.313	Nannospalax_galili
ENSTRUG00000017749	lsm5	64	87.952	ENSNGAG00000024142	Lsm5	86	87.952	Nannospalax_galili
ENSTRUG00000017749	lsm5	64	87.952	ENSNLEG00000015268	LSM5	86	87.952	Nomascus_leucogenys
ENSTRUG00000017749	lsm5	55	87.324	ENSOPRG00000002443	LSM5	88	87.324	Ochotona_princeps
ENSTRUG00000017749	lsm5	64	87.952	ENSODEG00000008258	-	86	87.952	Octodon_degus
ENSTRUG00000017749	lsm5	64	87.952	ENSODEG00000019072	-	86	87.952	Octodon_degus
ENSTRUG00000017749	lsm5	58	53.333	ENSOANG00000014540	-	93	53.333	Ornithorhynchus_anatinus
ENSTRUG00000017749	lsm5	64	87.952	ENSOCUG00000029043	LSM5	86	87.952	Oryctolagus_cuniculus
ENSTRUG00000017749	lsm5	66	87.500	ENSORLG00000027725	lsm5	53	87.500	Oryzias_latipes
ENSTRUG00000017749	lsm5	66	88.235	ENSORLG00020003019	lsm5	79	88.235	Oryzias_latipes_hni
ENSTRUG00000017749	lsm5	64	89.024	ENSORLG00015003338	lsm5	85	89.024	Oryzias_latipes_hsok
ENSTRUG00000017749	lsm5	65	87.356	ENSOMEG00000001078	lsm5	90	87.356	Oryzias_melastigma
ENSTRUG00000017749	lsm5	64	87.952	ENSOGAG00000013892	LSM5	86	87.952	Otolemur_garnettii
ENSTRUG00000017749	lsm5	64	87.952	ENSOARG00000006944	LSM5	86	87.952	Ovis_aries
ENSTRUG00000017749	lsm5	64	87.952	ENSPPAG00000003697	-	86	87.952	Pan_paniscus
ENSTRUG00000017749	lsm5	64	87.952	ENSPPRG00000002550	LSM5	86	87.952	Panthera_pardus
ENSTRUG00000017749	lsm5	64	87.952	ENSPTIG00000015604	LSM5	86	87.952	Panthera_tigris_altaica
ENSTRUG00000017749	lsm5	64	87.952	ENSPTRG00000019057	LSM5	86	87.952	Pan_troglodytes
ENSTRUG00000017749	lsm5	64	72.289	ENSPTRG00000049488	-	85	74.699	Pan_troglodytes
ENSTRUG00000017749	lsm5	64	84.337	ENSPANG00000033477	-	86	84.337	Papio_anubis
ENSTRUG00000017749	lsm5	64	87.952	ENSPANG00000032179	-	86	87.952	Papio_anubis
ENSTRUG00000017749	lsm5	64	78.313	ENSPANG00000032538	-	85	78.313	Papio_anubis
ENSTRUG00000017749	lsm5	64	89.024	ENSPKIG00000011910	lsm5	85	89.024	Paramormyrops_kingsleyae
ENSTRUG00000017749	lsm5	56	87.500	ENSPSIG00000014796	LSM5	91	87.500	Pelodiscus_sinensis
ENSTRUG00000017749	lsm5	64	60.241	ENSPEMG00000022375	-	84	60.241	Peromyscus_maniculatus_bairdii
ENSTRUG00000017749	lsm5	64	90.244	ENSPFOG00000001433	lsm5	85	90.244	Poecilia_formosa
ENSTRUG00000017749	lsm5	64	90.244	ENSPLAG00000009665	lsm5	85	90.244	Poecilia_latipinna
ENSTRUG00000017749	lsm5	64	90.244	ENSPMEG00000022265	lsm5	85	90.244	Poecilia_mexicana
ENSTRUG00000017749	lsm5	64	84.337	ENSPPYG00000017661	LSM5	86	84.337	Pongo_abelii
ENSTRUG00000017749	lsm5	64	89.024	ENSPCAG00000013740	LSM5	95	89.024	Procavia_capensis
ENSTRUG00000017749	lsm5	64	87.952	ENSPVAG00000009786	LSM5	86	87.952	Pteropus_vampyrus
ENSTRUG00000017749	lsm5	65	89.286	ENSPNYG00000022236	lsm5	90	89.286	Pundamilia_nyererei
ENSTRUG00000017749	lsm5	64	87.805	ENSPNAG00000001887	lsm5	85	87.805	Pygocentrus_nattereri
ENSTRUG00000017749	lsm5	64	87.952	ENSRNOG00000042126	Lsm5	86	87.952	Rattus_norvegicus
ENSTRUG00000017749	lsm5	65	82.955	ENSRNOG00000027305	AABR07065089.1	90	82.955	Rattus_norvegicus
ENSTRUG00000017749	lsm5	64	87.952	ENSRBIG00000030714	-	86	87.952	Rhinopithecus_bieti
ENSTRUG00000017749	lsm5	64	87.952	ENSRBIG00000027803	-	86	87.952	Rhinopithecus_bieti
ENSTRUG00000017749	lsm5	64	87.952	ENSRBIG00000030340	-	86	87.952	Rhinopithecus_bieti
ENSTRUG00000017749	lsm5	64	86.747	ENSRBIG00000024431	-	86	86.747	Rhinopithecus_bieti
ENSTRUG00000017749	lsm5	64	87.952	ENSRROG00000023884	-	86	87.952	Rhinopithecus_roxellana
ENSTRUG00000017749	lsm5	64	87.952	ENSRROG00000042782	-	86	87.952	Rhinopithecus_roxellana
ENSTRUG00000017749	lsm5	64	87.952	ENSRROG00000004655	-	86	87.952	Rhinopithecus_roxellana
ENSTRUG00000017749	lsm5	60	41.463	YER146W	-	83	41.463	Saccharomyces_cerevisiae
ENSTRUG00000017749	lsm5	64	63.855	ENSSBOG00000034794	-	83	63.855	Saimiri_boliviensis_boliviensis
ENSTRUG00000017749	lsm5	64	87.952	ENSSBOG00000019124	-	86	87.952	Saimiri_boliviensis_boliviensis
ENSTRUG00000017749	lsm5	64	87.952	ENSSBOG00000012312	LSM5	86	87.952	Saimiri_boliviensis_boliviensis
ENSTRUG00000017749	lsm5	64	89.024	ENSSFOG00015010099	lsm5	85	89.024	Scleropages_formosus
ENSTRUG00000017749	lsm5	72	64.516	ENSSLDG00000008014	-	95	64.516	Seriola_lalandi_dorsalis
ENSTRUG00000017749	lsm5	64	90.244	ENSSLDG00000025242	lsm5	85	90.244	Seriola_lalandi_dorsalis
ENSTRUG00000017749	lsm5	64	86.747	ENSSPUG00000002690	LSM5	86	86.747	Sphenodon_punctatus
ENSTRUG00000017749	lsm5	65	50.575	ENSSPAG00000005435	lsm5	85	50.575	Stegastes_partitus
ENSTRUG00000017749	lsm5	64	87.952	ENSSSCG00000026064	-	86	87.952	Sus_scrofa
ENSTRUG00000017749	lsm5	54	78.571	ENSSSCG00000029661	-	90	78.571	Sus_scrofa
ENSTRUG00000017749	lsm5	64	86.747	ENSTGUG00000017539	LSM5	86	86.747	Taeniopygia_guttata
ENSTRUG00000017749	lsm5	65	91.667	ENSTNIG00000008695	lsm5	90	91.667	Tetraodon_nigroviridis
ENSTRUG00000017749	lsm5	64	87.952	ENSTBEG00000004876	LSM5	86	87.952	Tupaia_belangeri
ENSTRUG00000017749	lsm5	64	87.952	ENSTTRG00000004237	LSM5	86	87.952	Tursiops_truncatus
ENSTRUG00000017749	lsm5	64	87.952	ENSUMAG00000002625	LSM5	56	87.952	Ursus_maritimus
ENSTRUG00000017749	lsm5	64	87.952	ENSVPAG00000009985	LSM5	86	87.952	Vicugna_pacos
ENSTRUG00000017749	lsm5	64	87.952	ENSVVUG00000021311	LSM5	86	87.952	Vulpes_vulpes
ENSTRUG00000017749	lsm5	65	87.356	ENSXETG00000026465	lsm5	100	87.356	Xenopus_tropicalis
ENSTRUG00000017749	lsm5	64	90.244	ENSXMAG00000029988	lsm5	85	90.244	Xiphophorus_maculatus