EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000018238 (Gene tree)
Gene ID: 101073703
Gene Symbol: polr2eb
Alias: fk97g10|polr2e|wu:fk97g10|zgc:101098
Full Name: RNA polymerase II subunit E
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 1876 bases
Position: chr20:4014482-4016357
Accession: 101073703
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000057329	RNA_pol_Rpb5_N	PF03871.14	5.4e-35	1	1
ENSTRUP00000046681	RNA_pol_Rpb5_N	PF03871.14	5.8e-25	1	1
ENSTRUP00000046681	RNA_pol_Rpb5_C	PF01191.19	1.2e-34	1	1
ENSTRUP00000057329	RNA_pol_Rpb5_C	PF01191.19	1.2e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000046839	-	738	-	ENSTRUP00000046681	245 (aa)	-	H2VBT9
ENSTRUT00000051581	-	552	XM_003974015	ENSTRUP00000057329	183 (aa)	XP_003974064	-

Gene Model

Click here to download ENSTRUG00000018238's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03020	RNA polymerase	KEGG
tru04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000018238's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000018238	polr2eb	100	93.989	ENSG00000099817	POLR2E	99	94.737	Homo_sapiens
ENSTRUG00000018238	polr2eb	100	100.000	ENSAPOG00000002935	polr2eb	100	100.000	Acanthochromis_polyacanthus
ENSTRUG00000018238	polr2eb	100	82.857	ENSAMEG00000003159	POLR2E	96	91.045	Ailuropoda_melanoleuca
ENSTRUG00000018238	polr2eb	100	99.454	ENSACIG00000024371	polr2eb	100	99.454	Amphilophus_citrinellus
ENSTRUG00000018238	polr2eb	100	100.000	ENSAOCG00000018166	polr2eb	100	100.000	Amphiprion_ocellaris
ENSTRUG00000018238	polr2eb	100	87.143	ENSAPEG00000009000	polr2eb	96	95.522	Amphiprion_percula
ENSTRUG00000018238	polr2eb	100	100.000	ENSATEG00000023760	polr2eb	100	100.000	Anabas_testudineus
ENSTRUG00000018238	polr2eb	100	94.536	ENSANAG00000038488	POLR2E	99	94.536	Aotus_nancymaae
ENSTRUG00000018238	polr2eb	100	99.454	ENSACLG00000005254	polr2eb	100	99.454	Astatotilapia_calliptera
ENSTRUG00000018238	polr2eb	100	86.667	ENSAMXG00000018915	POLR2E	95	95.980	Astyanax_mexicanus
ENSTRUG00000018238	polr2eb	100	82.857	ENSBTAG00000020776	POLR2E	96	91.045	Bos_taurus
ENSTRUG00000018238	polr2eb	99	69.712	WBGene00019246	rpb-5	94	75.758	Caenorhabditis_elegans
ENSTRUG00000018238	polr2eb	57	90.714	ENSCJAG00000007666	-	77	90.714	Callithrix_jacchus
ENSTRUG00000018238	polr2eb	100	80.000	ENSCAFG00000019546	POLR2E	95	88.945	Canis_familiaris
ENSTRUG00000018238	polr2eb	100	82.857	ENSCAFG00020017111	POLR2E	96	91.045	Canis_lupus_dingo
ENSTRUG00000018238	polr2eb	100	82.857	ENSCHIG00000014151	POLR2E	96	91.045	Capra_hircus
ENSTRUG00000018238	polr2eb	100	74.863	ENSTSYG00000026377	POLR2E	100	74.863	Carlito_syrichta
ENSTRUG00000018238	polr2eb	78	95.288	ENSCAPG00000010843	POLR2E	93	95.288	Cavia_aperea
ENSTRUG00000018238	polr2eb	100	82.857	ENSCPOG00000001542	POLR2E	96	91.045	Cavia_porcellus
ENSTRUG00000018238	polr2eb	100	94.536	ENSCCAG00000025658	POLR2E	99	94.536	Cebus_capucinus
ENSTRUG00000018238	polr2eb	100	94.536	ENSCATG00000008926	POLR2E	99	94.536	Cercocebus_atys
ENSTRUG00000018238	polr2eb	100	82.381	ENSCLAG00000014874	-	96	90.547	Chinchilla_lanigera
ENSTRUG00000018238	polr2eb	97	60.976	ENSCLAG00000009238	-	94	70.256	Chinchilla_lanigera
ENSTRUG00000018238	polr2eb	100	82.857	ENSCSAG00000012336	POLR2E	96	91.045	Chlorocebus_sabaeus
ENSTRUG00000018238	polr2eb	100	83.333	ENSCPBG00000009702	POLR2E	96	91.542	Chrysemys_picta_bellii
ENSTRUG00000018238	polr2eb	100	74.286	ENSCING00000024933	-	98	80.583	Ciona_intestinalis
ENSTRUG00000018238	polr2eb	100	94.536	ENSCANG00000025560	POLR2E	99	94.536	Colobus_angolensis_palliatus
ENSTRUG00000018238	polr2eb	100	83.333	ENSCGRG00001022927	Polr2e	96	91.045	Cricetulus_griseus_chok1gshd
ENSTRUG00000018238	polr2eb	100	77.209	ENSCGRG00000016441	Polr2e	96	84.466	Cricetulus_griseus_crigri
ENSTRUG00000018238	polr2eb	100	97.814	ENSCSEG00000007107	polr2eb	100	97.814	Cynoglossus_semilaevis
ENSTRUG00000018238	polr2eb	100	100.000	ENSCVAG00000019940	polr2eb	100	100.000	Cyprinodon_variegatus
ENSTRUG00000018238	polr2eb	100	86.190	ENSDARG00000026183	polr2eb	96	94.527	Danio_rerio
ENSTRUG00000018238	polr2eb	89	81.053	ENSDNOG00000044994	POLR2E	80	90.055	Dasypus_novemcinctus
ENSTRUG00000018238	polr2eb	100	82.857	ENSDORG00000001154	Polr2e	96	91.045	Dipodomys_ordii
ENSTRUG00000018238	polr2eb	99	73.684	FBgn0033571	Rpb5	98	80.000	Drosophila_melanogaster
ENSTRUG00000018238	polr2eb	71	75.796	ENSEBUG00000010159	-	72	85.811	Eptatretus_burgeri
ENSTRUG00000018238	polr2eb	59	88.966	ENSEASG00005021615	POLR2E	67	83.333	Equus_asinus_asinus
ENSTRUG00000018238	polr2eb	100	95.082	ENSECAG00000011124	POLR2E	100	95.082	Equus_caballus
ENSTRUG00000018238	polr2eb	100	97.814	ENSELUG00000005815	POLR2E	100	97.814	Esox_lucius
ENSTRUG00000018238	polr2eb	100	96.721	ENSELUG00000020646	polr2e	100	96.721	Esox_lucius
ENSTRUG00000018238	polr2eb	99	95.055	ENSFCAG00000007318	POLR2E	100	95.055	Felis_catus
ENSTRUG00000018238	polr2eb	78	95.812	ENSFALG00000013986	POLR2E	98	95.812	Ficedula_albicollis
ENSTRUG00000018238	polr2eb	100	82.857	ENSFDAG00000014539	POLR2E	96	91.045	Fukomys_damarensis
ENSTRUG00000018238	polr2eb	100	100.000	ENSFHEG00000022398	polr2eb	100	100.000	Fundulus_heteroclitus
ENSTRUG00000018238	polr2eb	100	85.714	ENSGMOG00000007615	polr2eb	95	94.975	Gadus_morhua
ENSTRUG00000018238	polr2eb	100	83.333	ENSGALG00000002591	POLR2E	96	91.542	Gallus_gallus
ENSTRUG00000018238	polr2eb	100	99.454	ENSGAFG00000005087	polr2eb	100	99.454	Gambusia_affinis
ENSTRUG00000018238	polr2eb	100	85.714	ENSGACG00000013247	polr2eb	95	94.975	Gasterosteus_aculeatus
ENSTRUG00000018238	polr2eb	100	83.333	ENSGAGG00000008356	POLR2E	96	91.542	Gopherus_agassizii
ENSTRUG00000018238	polr2eb	100	94.536	ENSGGOG00000011267	POLR2E	99	94.536	Gorilla_gorilla
ENSTRUG00000018238	polr2eb	63	93.913	ENSHBUG00000011099	polr2eb	100	95.070	Haplochromis_burtoni
ENSTRUG00000018238	polr2eb	100	82.857	ENSHGLG00000013330	POLR2E	96	91.045	Heterocephalus_glaber_female
ENSTRUG00000018238	polr2eb	100	82.857	ENSHGLG00100011014	POLR2E	96	91.045	Heterocephalus_glaber_male
ENSTRUG00000018238	polr2eb	50	87.368	ENSHCOG00000012099	-	88	96.429	Hippocampus_comes
ENSTRUG00000018238	polr2eb	100	98.361	ENSHCOG00000000906	polr2eb	100	98.361	Hippocampus_comes
ENSTRUG00000018238	polr2eb	100	87.143	ENSIPUG00000019801	polr2e	96	95.522	Ictalurus_punctatus
ENSTRUG00000018238	polr2eb	100	82.857	ENSSTOG00000002853	POLR2E	96	91.045	Ictidomys_tridecemlineatus
ENSTRUG00000018238	polr2eb	100	89.071	ENSJJAG00000003145	-	100	89.071	Jaculus_jaculus
ENSTRUG00000018238	polr2eb	73	70.199	ENSJJAG00000015812	-	95	75.658	Jaculus_jaculus
ENSTRUG00000018238	polr2eb	100	83.333	ENSJJAG00000016595	-	96	91.045	Jaculus_jaculus
ENSTRUG00000018238	polr2eb	100	87.143	ENSKMAG00000005954	polr2eb	96	95.522	Kryptolebias_marmoratus
ENSTRUG00000018238	polr2eb	100	100.000	ENSLBEG00000024802	polr2eb	100	100.000	Labrus_bergylta
ENSTRUG00000018238	polr2eb	100	83.810	ENSLACG00000013686	POLR2E	96	92.040	Latimeria_chalumnae
ENSTRUG00000018238	polr2eb	74	82.716	ENSLOCG00000004599	POLR2E	94	93.464	Lepisosteus_oculatus
ENSTRUG00000018238	polr2eb	100	63.679	ENSLAFG00000025587	POLR2E	90	74.479	Loxodonta_africana
ENSTRUG00000018238	polr2eb	100	94.536	ENSMFAG00000002884	POLR2E	99	94.536	Macaca_fascicularis
ENSTRUG00000018238	polr2eb	100	94.536	ENSMMUG00000013927	POLR2E	99	94.536	Macaca_mulatta
ENSTRUG00000018238	polr2eb	100	52.133	ENSMNEG00000033452	-	95	59.406	Macaca_nemestrina
ENSTRUG00000018238	polr2eb	100	94.536	ENSMNEG00000034046	-	99	94.536	Macaca_nemestrina
ENSTRUG00000018238	polr2eb	91	75.301	ENSMLEG00000012405	POLR2E	93	79.058	Mandrillus_leucophaeus
ENSTRUG00000018238	polr2eb	100	100.000	ENSMAMG00000018703	polr2eb	100	100.000	Mastacembelus_armatus
ENSTRUG00000018238	polr2eb	100	99.454	ENSMZEG00005010796	polr2eb	100	99.454	Maylandia_zebra
ENSTRUG00000018238	polr2eb	100	82.464	ENSMGAG00000003769	POLR2E	96	90.594	Meleagris_gallopavo
ENSTRUG00000018238	polr2eb	78	95.288	ENSMAUG00000010125	-	100	95.288	Mesocricetus_auratus
ENSTRUG00000018238	polr2eb	100	53.333	ENSMAUG00000011003	-	94	69.355	Mesocricetus_auratus
ENSTRUG00000018238	polr2eb	100	95.082	ENSMICG00000013063	POLR2E	99	95.082	Microcebus_murinus
ENSTRUG00000018238	polr2eb	100	83.333	ENSMOCG00000013414	Polr2e	96	91.045	Microtus_ochrogaster
ENSTRUG00000018238	polr2eb	78	89.005	ENSMMOG00000001167	polr2eb	88	89.005	Mola_mola
ENSTRUG00000018238	polr2eb	100	97.814	ENSMMOG00000001161	polr2eb	100	97.814	Mola_mola
ENSTRUG00000018238	polr2eb	100	83.333	ENSMODG00000005494	POLR2E	96	91.542	Monodelphis_domestica
ENSTRUG00000018238	polr2eb	100	86.190	ENSMALG00000021888	polr2eb	96	94.527	Monopterus_albus
ENSTRUG00000018238	polr2eb	100	83.333	MGP_CAROLIEiJ_G0015561	Polr2e	96	91.045	Mus_caroli
ENSTRUG00000018238	polr2eb	100	83.333	ENSMUSG00000004667	Polr2e	96	91.045	Mus_musculus
ENSTRUG00000018238	polr2eb	100	83.333	MGP_PahariEiJ_G0030974	Polr2e	96	91.045	Mus_pahari
ENSTRUG00000018238	polr2eb	100	83.333	MGP_SPRETEiJ_G0016379	Polr2e	96	91.045	Mus_spretus
ENSTRUG00000018238	polr2eb	100	82.381	ENSMPUG00000008953	POLR2E	96	90.050	Mustela_putorius_furo
ENSTRUG00000018238	polr2eb	100	82.857	ENSMLUG00000013193	POLR2E	96	91.045	Myotis_lucifugus
ENSTRUG00000018238	polr2eb	67	83.465	ENSMLUG00000006376	-	94	72.549	Myotis_lucifugus
ENSTRUG00000018238	polr2eb	83	59.777	ENSNGAG00000017344	-	94	68.362	Nannospalax_galili
ENSTRUG00000018238	polr2eb	100	83.333	ENSNGAG00000001147	Polr2e	96	91.045	Nannospalax_galili
ENSTRUG00000018238	polr2eb	100	99.454	ENSNBRG00000022772	polr2eb	100	99.454	Neolamprologus_brichardi
ENSTRUG00000018238	polr2eb	100	90.761	ENSNLEG00000001207	-	100	90.761	Nomascus_leucogenys
ENSTRUG00000018238	polr2eb	100	68.844	ENSNLEG00000031364	-	100	68.844	Nomascus_leucogenys
ENSTRUG00000018238	polr2eb	100	72.381	ENSOPRG00000008331	POLR2E	96	79.104	Ochotona_princeps
ENSTRUG00000018238	polr2eb	100	70.833	ENSODEG00000011490	-	100	70.833	Octodon_degus
ENSTRUG00000018238	polr2eb	87	70.968	ENSODEG00000007985	-	95	80.791	Octodon_degus
ENSTRUG00000018238	polr2eb	100	82.857	ENSODEG00000013230	-	96	91.045	Octodon_degus
ENSTRUG00000018238	polr2eb	100	86.190	ENSONIG00000002519	polr2eb	96	95.025	Oreochromis_niloticus
ENSTRUG00000018238	polr2eb	100	99.454	ENSORLG00000015346	polr2eb	100	99.454	Oryzias_latipes
ENSTRUG00000018238	polr2eb	100	99.454	ENSORLG00020020700	polr2e	100	99.454	Oryzias_latipes_hni
ENSTRUG00000018238	polr2eb	100	99.454	ENSORLG00015016842	polr2e	100	99.454	Oryzias_latipes_hsok
ENSTRUG00000018238	polr2eb	100	87.143	ENSOMEG00000002709	polr2eb	96	95.522	Oryzias_melastigma
ENSTRUG00000018238	polr2eb	100	82.857	ENSOGAG00000012311	POLR2E	96	91.045	Otolemur_garnettii
ENSTRUG00000018238	polr2eb	100	82.857	ENSOARG00000010994	POLR2E	96	91.045	Ovis_aries
ENSTRUG00000018238	polr2eb	90	93.902	ENSPPAG00000003145	POLR2E	100	95.288	Pan_paniscus
ENSTRUG00000018238	polr2eb	99	95.055	ENSPPRG00000000777	POLR2E	100	95.055	Panthera_pardus
ENSTRUG00000018238	polr2eb	90	85.455	ENSPTIG00000012237	POLR2E	92	95.105	Panthera_tigris_altaica
ENSTRUG00000018238	polr2eb	100	94.536	ENSPTRG00000010183	POLR2E	99	94.536	Pan_troglodytes
ENSTRUG00000018238	polr2eb	100	94.536	ENSPANG00000018011	POLR2E	99	94.536	Papio_anubis
ENSTRUG00000018238	polr2eb	100	98.361	ENSPKIG00000009607	POLR2E	100	98.361	Paramormyrops_kingsleyae
ENSTRUG00000018238	polr2eb	100	98.361	ENSPKIG00000024123	POLR2E	100	98.361	Paramormyrops_kingsleyae
ENSTRUG00000018238	polr2eb	97	79.024	ENSPSIG00000002870	POLR2E	92	95.812	Pelodiscus_sinensis
ENSTRUG00000018238	polr2eb	100	100.000	ENSPMGG00000014354	polr2eb	100	100.000	Periophthalmus_magnuspinnatus
ENSTRUG00000018238	polr2eb	100	83.333	ENSPEMG00000023261	Polr2e	96	91.045	Peromyscus_maniculatus_bairdii
ENSTRUG00000018238	polr2eb	89	81.481	ENSPCIG00000007312	POLR2E	71	90.556	Phascolarctos_cinereus
ENSTRUG00000018238	polr2eb	100	86.667	ENSPFOG00000005734	polr2eb	95	95.980	Poecilia_formosa
ENSTRUG00000018238	polr2eb	100	99.454	ENSPLAG00000014496	polr2eb	100	99.454	Poecilia_latipinna
ENSTRUG00000018238	polr2eb	100	99.454	ENSPMEG00000008053	polr2eb	100	99.454	Poecilia_mexicana
ENSTRUG00000018238	polr2eb	100	99.454	ENSPREG00000006489	polr2eb	100	99.454	Poecilia_reticulata
ENSTRUG00000018238	polr2eb	100	75.355	ENSPPYG00000009305	POLR2E	96	83.168	Pongo_abelii
ENSTRUG00000018238	polr2eb	100	94.536	ENSPCOG00000014491	POLR2E	98	94.536	Propithecus_coquereli
ENSTRUG00000018238	polr2eb	75	100.000	ENSPVAG00000007718	-	65	100.000	Pteropus_vampyrus
ENSTRUG00000018238	polr2eb	89	85.263	ENSPNYG00000019797	polr2eb	91	94.475	Pundamilia_nyererei
ENSTRUG00000018238	polr2eb	100	98.907	ENSPNAG00000026263	POLR2E	100	98.907	Pygocentrus_nattereri
ENSTRUG00000018238	polr2eb	100	83.333	ENSRNOG00000013545	Polr2e	95	95.288	Rattus_norvegicus
ENSTRUG00000018238	polr2eb	100	94.536	ENSRBIG00000028726	-	99	94.536	Rhinopithecus_bieti
ENSTRUG00000018238	polr2eb	100	58.294	ENSRBIG00000027259	-	95	65.347	Rhinopithecus_bieti
ENSTRUG00000018238	polr2eb	100	94.536	ENSRROG00000043763	POLR2E	99	94.536	Rhinopithecus_roxellana
ENSTRUG00000018238	polr2eb	99	40.092	YBR154C	RPB5	98	40.092	Saccharomyces_cerevisiae
ENSTRUG00000018238	polr2eb	100	94.536	ENSSBOG00000027241	POLR2E	99	94.536	Saimiri_boliviensis_boliviensis
ENSTRUG00000018238	polr2eb	100	83.333	ENSSHAG00000010690	POLR2E	96	91.542	Sarcophilus_harrisii
ENSTRUG00000018238	polr2eb	100	100.000	ENSSFOG00015006073	polr2e	100	100.000	Scleropages_formosus
ENSTRUG00000018238	polr2eb	100	90.710	ENSSMAG00000012782	polr2eb	96	95.522	Scophthalmus_maximus
ENSTRUG00000018238	polr2eb	100	100.000	ENSSDUG00000003352	polr2eb	100	100.000	Seriola_dumerili
ENSTRUG00000018238	polr2eb	100	100.000	ENSSLDG00000004965	polr2eb	100	100.000	Seriola_lalandi_dorsalis
ENSTRUG00000018238	polr2eb	100	83.333	ENSSPUG00000006114	POLR2E	96	91.542	Sphenodon_punctatus
ENSTRUG00000018238	polr2eb	100	100.000	ENSSPAG00000017556	polr2eb	100	100.000	Stegastes_partitus
ENSTRUG00000018238	polr2eb	100	82.857	ENSSSCG00000021472	POLR2E	96	91.045	Sus_scrofa
ENSTRUG00000018238	polr2eb	75	84.783	ENSTGUG00000000922	POLR2E	96	84.783	Taeniopygia_guttata
ENSTRUG00000018238	polr2eb	100	87.143	ENSTNIG00000013187	polr2eb	96	95.522	Tetraodon_nigroviridis
ENSTRUG00000018238	polr2eb	100	82.381	ENSTTRG00000001484	POLR2E	96	91.045	Tursiops_truncatus
ENSTRUG00000018238	polr2eb	100	94.536	ENSUAMG00000009166	POLR2E	100	94.536	Ursus_americanus
ENSTRUG00000018238	polr2eb	100	82.857	ENSVVUG00000022818	POLR2E	52	90.594	Vulpes_vulpes
ENSTRUG00000018238	polr2eb	100	84.286	ENSXETG00000003291	polr2e	96	92.537	Xenopus_tropicalis
ENSTRUG00000018238	polr2eb	100	99.454	ENSXCOG00000009197	polr2eb	100	99.454	Xiphophorus_couchianus
ENSTRUG00000018238	polr2eb	100	99.454	ENSXMAG00000026495	polr2eb	100	99.454	Xiphophorus_maculatus