EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000019507 (Gene tree)
Gene ID: 101078452
Gene Symbol: srm
Alias: fa18b03|id:ibd1177|wu:fa18b03|zgc:63600
Full Name: spermidine synthase
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 5301 bases
Position: chr3:5234578-5239878
Accession: 101078452
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000052201	Methyltransf_31	PF13847.6	1.8e-06	1	1
ENSTRUP00000052670	Methyltransf_31	PF13847.6	2.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000048849	-	3939	XM_003963235	ENSTRUP00000052201	289 (aa)	XP_003963284	UPI000298E592
ENSTRUT00000056882	-	4040	-	ENSTRUP00000052670	310 (aa)	-	-

Gene Model

Click here to download ENSTRUG00000019507's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru00270	Cysteine and methionine metabolism	KEGG
tru00330	Arginine and proline metabolism	KEGG
tru00410	beta-Alanine metabolism	KEGG
tru00480	Glutathione metabolism	KEGG
tru01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000019507's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000019507	srm	99	81.882	ENSATEG00000017326	srm	100	81.882	Anabas_testudineus
ENSTRUG00000019507	srm	100	84.775	ENSHCOG00000016154	srm	100	84.775	Hippocampus_comes
ENSTRUG00000019507	srm	94	72.059	ENSTTRG00000001316	SRM	95	72.059	Tursiops_truncatus