EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000019741 (Gene tree)
Gene ID: 101078026
Gene Symbol: polr1d
Alias: im:7162148|zgc:136449
Full Name: DNA-directed RNA polymerases I and III subunit RPAC2-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 4923 bases
Position: chr14:704222-709144
Accession: 101078026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000057058	RNA_pol_L_2	PF13656.6	2.4e-30	1	1
ENSTRUP00000055368	RNA_pol_L_2	PF13656.6	5.5e-16	1	1
ENSTRUP00000057058	RNA_pol_L	PF01193.24	2.8e-13	1	1
ENSTRUP00000055368	RNA_pol_L	PF01193.24	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000056924	-	1119	-	ENSTRUP00000055368	151 (aa)	-	-
ENSTRUT00000055019	-	809	XM_011610413	ENSTRUP00000057058	114 (aa)	XP_011608715	UPI0005D2C113

Gene Model

Click here to download ENSTRUG00000019741's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03020	RNA polymerase	KEGG
tru04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000019741's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000019741	polr1d	65	35.135	ENSTRUG00000020842	polr2j	63	35.135

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000019741	polr1d	91	65.385	ENSG00000186184	POLR1D	90	65.385	Homo_sapiens
ENSTRUG00000019741	polr1d	89	79.412	ENSAPOG00000021882	polr1d	96	79.412	Acanthochromis_polyacanthus
ENSTRUG00000019741	polr1d	91	65.385	ENSAMEG00000019095	POLR1D	83	65.385	Ailuropoda_melanoleuca
ENSTRUG00000019741	polr1d	100	79.130	ENSACIG00000013328	polr1d	100	79.130	Amphilophus_citrinellus
ENSTRUG00000019741	polr1d	100	78.947	ENSAOCG00000018500	polr1d	100	78.947	Amphiprion_ocellaris
ENSTRUG00000019741	polr1d	100	78.947	ENSAPEG00000009489	polr1d	100	78.947	Amphiprion_percula
ENSTRUG00000019741	polr1d	100	78.947	ENSATEG00000019322	polr1d	100	78.947	Anabas_testudineus
ENSTRUG00000019741	polr1d	98	64.286	ENSACAG00000015753	POLR1D	97	64.286	Anolis_carolinensis
ENSTRUG00000019741	polr1d	91	65.385	ENSANAG00000024486	POLR1D	78	65.385	Aotus_nancymaae
ENSTRUG00000019741	polr1d	100	80.702	ENSACLG00000023805	polr1d	100	80.702	Astatotilapia_calliptera
ENSTRUG00000019741	polr1d	94	75.701	ENSAMXG00000036118	polr1d	93	75.701	Astyanax_mexicanus
ENSTRUG00000019741	polr1d	91	66.346	ENSBTAG00000033252	-	78	66.346	Bos_taurus
ENSTRUG00000019741	polr1d	91	66.346	ENSBTAG00000008642	POLR1D	78	66.346	Bos_taurus
ENSTRUG00000019741	polr1d	70	41.250	WBGene00010230	rpac-19	56	41.250	Caenorhabditis_elegans
ENSTRUG00000019741	polr1d	91	66.346	ENSCJAG00000044669	POLR1D	78	66.346	Callithrix_jacchus
ENSTRUG00000019741	polr1d	91	65.385	ENSCAFG00000006755	POLR1D	78	65.385	Canis_familiaris
ENSTRUG00000019741	polr1d	91	65.385	ENSCHIG00000021910	POLR1D	78	65.385	Capra_hircus
ENSTRUG00000019741	polr1d	91	67.308	ENSTSYG00000026817	-	78	67.308	Carlito_syrichta
ENSTRUG00000019741	polr1d	95	57.273	ENSTSYG00000034852	-	88	57.273	Carlito_syrichta
ENSTRUG00000019741	polr1d	56	57.812	ENSCAPG00000006058	-	65	57.812	Cavia_aperea
ENSTRUG00000019741	polr1d	56	57.812	ENSCPOG00000030450	-	65	57.812	Cavia_porcellus
ENSTRUG00000019741	polr1d	96	50.000	ENSCCAG00000020191	-	82	50.000	Cebus_capucinus
ENSTRUG00000019741	polr1d	91	65.385	ENSCCAG00000021349	-	78	65.385	Cebus_capucinus
ENSTRUG00000019741	polr1d	91	65.385	ENSCATG00000030710	-	78	65.385	Cercocebus_atys
ENSTRUG00000019741	polr1d	91	57.692	ENSCATG00000022900	-	77	57.692	Cercocebus_atys
ENSTRUG00000019741	polr1d	91	67.308	ENSCLAG00000017623	POLR1D	84	67.308	Chinchilla_lanigera
ENSTRUG00000019741	polr1d	89	73.267	ENSCPBG00000004719	POLR1D	100	73.267	Chrysemys_picta_bellii
ENSTRUG00000019741	polr1d	91	64.423	ENSCANG00000037694	-	78	64.423	Colobus_angolensis_palliatus
ENSTRUG00000019741	polr1d	91	65.385	ENSCANG00000028632	-	78	65.385	Colobus_angolensis_palliatus
ENSTRUG00000019741	polr1d	91	66.346	ENSCGRG00001021251	Polr1d	78	66.346	Cricetulus_griseus_chok1gshd
ENSTRUG00000019741	polr1d	91	66.346	ENSCGRG00000011639	Polr1d	78	66.346	Cricetulus_griseus_crigri
ENSTRUG00000019741	polr1d	93	76.415	ENSCSEG00000018268	polr1d	100	73.504	Cynoglossus_semilaevis
ENSTRUG00000019741	polr1d	100	80.702	ENSCVAG00000018527	polr1d	100	80.702	Cyprinodon_variegatus
ENSTRUG00000019741	polr1d	96	70.909	ENSDARG00000037570	polr1d	97	70.909	Danio_rerio
ENSTRUG00000019741	polr1d	91	64.423	ENSDNOG00000043676	-	78	64.423	Dasypus_novemcinctus
ENSTRUG00000019741	polr1d	91	63.462	ENSDNOG00000046247	-	78	63.462	Dasypus_novemcinctus
ENSTRUG00000019741	polr1d	90	66.990	ENSDORG00000029155	Polr1d	77	66.990	Dipodomys_ordii
ENSTRUG00000019741	polr1d	75	47.059	FBgn0086447	l(2)37Cg	80	47.059	Drosophila_melanogaster
ENSTRUG00000019741	polr1d	93	66.981	ENSETEG00000012797	POLR1D	85	66.981	Echinops_telfairi
ENSTRUG00000019741	polr1d	84	63.542	ENSEBUG00000011748	polr1d	67	63.542	Eptatretus_burgeri
ENSTRUG00000019741	polr1d	91	65.385	ENSEASG00005022487	POLR1D	81	65.385	Equus_asinus_asinus
ENSTRUG00000019741	polr1d	91	65.385	ENSEEUG00000013144	POLR1D	84	65.385	Erinaceus_europaeus
ENSTRUG00000019741	polr1d	94	76.852	ENSELUG00000005105	rpac2	95	76.852	Esox_lucius
ENSTRUG00000019741	polr1d	91	65.385	ENSFCAG00000030162	POLR1D	78	65.385	Felis_catus
ENSTRUG00000019741	polr1d	88	73.000	ENSFALG00000011463	POLR1D	99	73.000	Ficedula_albicollis
ENSTRUG00000019741	polr1d	91	66.346	ENSFDAG00000004463	POLR1D	78	66.346	Fukomys_damarensis
ENSTRUG00000019741	polr1d	100	80.702	ENSFHEG00000015410	polr1d	99	80.702	Fundulus_heteroclitus
ENSTRUG00000019741	polr1d	61	63.768	ENSGALG00000007470	POLR1D	68	65.217	Gallus_gallus
ENSTRUG00000019741	polr1d	100	81.579	ENSGAFG00000001693	polr1d	100	81.579	Gambusia_affinis
ENSTRUG00000019741	polr1d	94	77.570	ENSGACG00000018585	polr1d	91	77.570	Gasterosteus_aculeatus
ENSTRUG00000019741	polr1d	100	71.053	ENSGAGG00000008503	POLR1D	100	71.053	Gopherus_agassizii
ENSTRUG00000019741	polr1d	91	65.385	ENSGGOG00000004235	POLR1D	78	65.385	Gorilla_gorilla
ENSTRUG00000019741	polr1d	100	80.702	ENSHBUG00000002111	polr1d	100	80.702	Haplochromis_burtoni
ENSTRUG00000019741	polr1d	91	65.385	ENSHGLG00000003202	POLR1D	78	65.385	Heterocephalus_glaber_female
ENSTRUG00000019741	polr1d	91	65.385	ENSHGLG00100009393	POLR1D	78	65.385	Heterocephalus_glaber_male
ENSTRUG00000019741	polr1d	100	75.439	ENSHCOG00000003258	polr1d	100	75.439	Hippocampus_comes
ENSTRUG00000019741	polr1d	94	74.766	ENSIPUG00000014810	polr1d	93	74.766	Ictalurus_punctatus
ENSTRUG00000019741	polr1d	91	65.385	ENSSTOG00000013877	POLR1D	78	65.385	Ictidomys_tridecemlineatus
ENSTRUG00000019741	polr1d	91	51.923	ENSJJAG00000021667	-	61	51.923	Jaculus_jaculus
ENSTRUG00000019741	polr1d	91	65.385	ENSJJAG00000022671	-	87	65.385	Jaculus_jaculus
ENSTRUG00000019741	polr1d	100	82.456	ENSKMAG00000015256	polr1d	100	82.456	Kryptolebias_marmoratus
ENSTRUG00000019741	polr1d	100	78.070	ENSLBEG00000015919	polr1d	100	78.070	Labrus_bergylta
ENSTRUG00000019741	polr1d	96	65.766	ENSLACG00000006810	POLR1D	92	65.766	Latimeria_chalumnae
ENSTRUG00000019741	polr1d	61	79.710	ENSLOCG00000014976	polr1d	93	79.710	Lepisosteus_oculatus
ENSTRUG00000019741	polr1d	91	66.346	ENSLAFG00000032290	POLR1D	78	66.346	Loxodonta_africana
ENSTRUG00000019741	polr1d	91	65.385	ENSMFAG00000045264	POLR1D	81	65.385	Macaca_fascicularis
ENSTRUG00000019741	polr1d	91	65.385	ENSMMUG00000020386	POLR1D	90	65.385	Macaca_mulatta
ENSTRUG00000019741	polr1d	69	60.759	ENSMMUG00000041570	-	71	60.759	Macaca_mulatta
ENSTRUG00000019741	polr1d	91	65.385	ENSMNEG00000008630	-	78	65.385	Macaca_nemestrina
ENSTRUG00000019741	polr1d	84	53.125	ENSMNEG00000038120	-	74	53.125	Macaca_nemestrina
ENSTRUG00000019741	polr1d	91	57.692	ENSMLEG00000032251	-	77	57.692	Mandrillus_leucophaeus
ENSTRUG00000019741	polr1d	91	65.385	ENSMLEG00000041048	-	78	65.385	Mandrillus_leucophaeus
ENSTRUG00000019741	polr1d	89	80.392	ENSMAMG00000014834	polr1d	95	80.392	Mastacembelus_armatus
ENSTRUG00000019741	polr1d	89	81.373	ENSMZEG00005006638	polr1d	90	81.373	Maylandia_zebra
ENSTRUG00000019741	polr1d	81	77.174	ENSMGAG00000005322	POLR1D	84	77.174	Meleagris_gallopavo
ENSTRUG00000019741	polr1d	91	66.346	ENSMAUG00000001946	Polr1d	78	66.346	Mesocricetus_auratus
ENSTRUG00000019741	polr1d	91	65.385	ENSMICG00000016883	-	78	65.385	Microcebus_murinus
ENSTRUG00000019741	polr1d	97	49.550	ENSMICG00000007349	-	83	49.550	Microcebus_murinus
ENSTRUG00000019741	polr1d	91	65.385	ENSMOCG00000021288	Polr1d	78	65.385	Microtus_ochrogaster
ENSTRUG00000019741	polr1d	100	81.579	ENSMMOG00000009605	polr1d	100	81.579	Mola_mola
ENSTRUG00000019741	polr1d	100	68.421	ENSMODG00000023881	POLR1D	100	68.421	Monodelphis_domestica
ENSTRUG00000019741	polr1d	100	75.439	ENSMALG00000010652	polr1d	100	75.439	Monopterus_albus
ENSTRUG00000019741	polr1d	97	61.261	MGP_CAROLIEiJ_G0028034	Polr1d	83	61.261	Mus_caroli
ENSTRUG00000019741	polr1d	90	65.049	ENSMUSG00000029642	Polr1d	77	65.049	Mus_musculus
ENSTRUG00000019741	polr1d	90	65.049	MGP_PahariEiJ_G0024600	Polr1d	77	65.049	Mus_pahari
ENSTRUG00000019741	polr1d	90	64.078	MGP_SPRETEiJ_G0029032	Polr1d	77	64.078	Mus_spretus
ENSTRUG00000019741	polr1d	95	64.815	ENSMLUG00000027169	-	79	64.815	Myotis_lucifugus
ENSTRUG00000019741	polr1d	91	59.615	ENSMLUG00000004118	-	78	59.615	Myotis_lucifugus
ENSTRUG00000019741	polr1d	94	65.421	ENSNGAG00000006014	Polr1d	92	65.421	Nannospalax_galili
ENSTRUG00000019741	polr1d	100	80.702	ENSNBRG00000020327	polr1d	100	80.702	Neolamprologus_brichardi
ENSTRUG00000019741	polr1d	91	65.385	ENSNLEG00000000358	POLR1D	78	65.385	Nomascus_leucogenys
ENSTRUG00000019741	polr1d	91	56.731	ENSODEG00000014801	-	76	56.731	Octodon_degus
ENSTRUG00000019741	polr1d	91	67.308	ENSODEG00000005294	-	78	67.308	Octodon_degus
ENSTRUG00000019741	polr1d	93	73.585	ENSOANG00000008708	-	98	73.585	Ornithorhynchus_anatinus
ENSTRUG00000019741	polr1d	91	65.385	ENSOCUG00000015706	POLR1D	64	65.385	Oryctolagus_cuniculus
ENSTRUG00000019741	polr1d	100	79.825	ENSORLG00000010257	polr1d	100	79.825	Oryzias_latipes
ENSTRUG00000019741	polr1d	100	79.825	ENSORLG00020000533	polr1d	77	79.825	Oryzias_latipes_hni
ENSTRUG00000019741	polr1d	100	80.702	ENSORLG00015013267	polr1d	75	80.702	Oryzias_latipes_hsok
ENSTRUG00000019741	polr1d	100	81.579	ENSOMEG00000014912	polr1d	76	81.579	Oryzias_melastigma
ENSTRUG00000019741	polr1d	91	66.346	ENSOGAG00000014601	POLR1D	78	66.346	Otolemur_garnettii
ENSTRUG00000019741	polr1d	91	65.385	ENSOARG00000017005	POLR1D	80	65.385	Ovis_aries
ENSTRUG00000019741	polr1d	91	65.385	ENSPPAG00000028138	POLR1D	78	65.385	Pan_paniscus
ENSTRUG00000019741	polr1d	91	65.385	ENSPPRG00000003381	POLR1D	78	65.385	Panthera_pardus
ENSTRUG00000019741	polr1d	91	65.385	ENSPTIG00000018137	POLR1D	78	65.385	Panthera_tigris_altaica
ENSTRUG00000019741	polr1d	91	65.385	ENSPTRG00000005734	POLR1D	78	65.385	Pan_troglodytes
ENSTRUG00000019741	polr1d	91	54.808	ENSPANG00000035051	-	77	54.808	Papio_anubis
ENSTRUG00000019741	polr1d	91	65.385	ENSPANG00000020259	-	78	65.385	Papio_anubis
ENSTRUG00000019741	polr1d	82	78.495	ENSPKIG00000021891	polr1d	91	59.483	Paramormyrops_kingsleyae
ENSTRUG00000019741	polr1d	100	69.298	ENSPSIG00000011822	POLR1D	88	69.298	Pelodiscus_sinensis
ENSTRUG00000019741	polr1d	100	75.439	ENSPMGG00000010359	polr1d	99	75.439	Periophthalmus_magnuspinnatus
ENSTRUG00000019741	polr1d	100	67.544	ENSPMGG00000012998	POLR1D	84	67.544	Periophthalmus_magnuspinnatus
ENSTRUG00000019741	polr1d	91	66.346	ENSPEMG00000006336	-	80	66.346	Peromyscus_maniculatus_bairdii
ENSTRUG00000019741	polr1d	85	60.825	ENSPMAG00000004228	polr1d	81	60.825	Petromyzon_marinus
ENSTRUG00000019741	polr1d	100	67.544	ENSPCIG00000001673	POLR1D	100	67.544	Phascolarctos_cinereus
ENSTRUG00000019741	polr1d	100	82.456	ENSPFOG00000023343	polr1d	100	82.456	Poecilia_formosa
ENSTRUG00000019741	polr1d	100	82.456	ENSPLAG00000009675	polr1d	100	82.456	Poecilia_latipinna
ENSTRUG00000019741	polr1d	100	82.456	ENSPMEG00000004628	polr1d	100	82.456	Poecilia_mexicana
ENSTRUG00000019741	polr1d	100	82.456	ENSPREG00000022032	polr1d	100	82.456	Poecilia_reticulata
ENSTRUG00000019741	polr1d	91	64.423	ENSPCOG00000028175	POLR1D	78	64.423	Propithecus_coquereli
ENSTRUG00000019741	polr1d	100	80.702	ENSPNYG00000000107	polr1d	100	80.702	Pundamilia_nyererei
ENSTRUG00000019741	polr1d	94	71.963	ENSPNAG00000001512	polr1d	90	71.963	Pygocentrus_nattereri
ENSTRUG00000019741	polr1d	91	65.385	ENSRBIG00000036378	-	78	65.385	Rhinopithecus_bieti
ENSTRUG00000019741	polr1d	91	62.500	ENSRBIG00000000336	-	78	62.500	Rhinopithecus_bieti
ENSTRUG00000019741	polr1d	91	63.462	ENSRROG00000026751	-	78	63.462	Rhinopithecus_roxellana
ENSTRUG00000019741	polr1d	91	65.385	ENSRROG00000042232	-	78	65.385	Rhinopithecus_roxellana
ENSTRUG00000019741	polr1d	82	50.538	YNL113W	RPC19	65	50.538	Saccharomyces_cerevisiae
ENSTRUG00000019741	polr1d	86	64.286	ENSSBOG00000030146	-	72	64.286	Saimiri_boliviensis_boliviensis
ENSTRUG00000019741	polr1d	91	65.385	ENSSBOG00000028482	-	78	65.385	Saimiri_boliviensis_boliviensis
ENSTRUG00000019741	polr1d	97	65.766	ENSSHAG00000001190	POLR1D	86	65.766	Sarcophilus_harrisii
ENSTRUG00000019741	polr1d	97	76.577	ENSSFOG00015011375	polr1d	96	76.577	Scleropages_formosus
ENSTRUG00000019741	polr1d	100	78.947	ENSSMAG00000011861	polr1d	100	78.947	Scophthalmus_maximus
ENSTRUG00000019741	polr1d	100	78.070	ENSSDUG00000011930	polr1d	100	78.070	Seriola_dumerili
ENSTRUG00000019741	polr1d	99	72.807	ENSSLDG00000023871	polr1d	97	72.807	Seriola_lalandi_dorsalis
ENSTRUG00000019741	polr1d	91	65.385	ENSSARG00000007840	POLR1D	78	65.385	Sorex_araneus
ENSTRUG00000019741	polr1d	92	70.476	ENSSPUG00000005786	POLR1D	96	67.857	Sphenodon_punctatus
ENSTRUG00000019741	polr1d	100	80.702	ENSSPAG00000011764	polr1d	100	80.702	Stegastes_partitus
ENSTRUG00000019741	polr1d	91	65.385	ENSSSCG00000009310	POLR1D	78	65.385	Sus_scrofa
ENSTRUG00000019741	polr1d	82	76.344	ENSTGUG00000005450	POLR1D	97	76.344	Taeniopygia_guttata
ENSTRUG00000019741	polr1d	91	65.385	ENSTBEG00000007006	POLR1D	84	65.385	Tupaia_belangeri
ENSTRUG00000019741	polr1d	91	65.385	ENSUAMG00000011413	POLR1D	78	65.385	Ursus_americanus
ENSTRUG00000019741	polr1d	91	65.385	ENSUMAG00000016968	POLR1D	81	65.385	Ursus_maritimus
ENSTRUG00000019741	polr1d	91	65.385	ENSVVUG00000009216	POLR1D	78	65.385	Vulpes_vulpes
ENSTRUG00000019741	polr1d	89	84.158	ENSXCOG00000011731	polr1d	78	84.158	Xiphophorus_couchianus
ENSTRUG00000019741	polr1d	89	83.168	ENSXMAG00000017538	polr1d	78	83.168	Xiphophorus_maculatus