EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000019860 (Gene tree)
Gene ID: 101078538
Gene Symbol: blm
Alias: -
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 6779 bases
Position: chr9:524564-531342
Accession: 101078538
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000055916	HRDC	PF00570.23	3.6e-15	1	1
ENSTRUP00000055916	BDHCT	PF08072.11	1.6e-19	1	1
ENSTRUP00000055916	DEAD	PF00270.29	4.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000053006	-	4517	XM_003967040	ENSTRUP00000055916	1366 (aa)	XP_003967089	UPI0005D26E58

Gene Model

Click here to download ENSTRUG00000019860's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03440	Homologous recombination	KEGG
tru03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000019860's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000019860	blm	60	61.229	ENSG00000197299	BLM	60	72.951	Homo_sapiens
ENSTRUG00000019860	blm	99	68.055	ENSAPOG00000017966	blm	99	67.412	Acanthochromis_polyacanthus
ENSTRUG00000019860	blm	69	63.486	ENSAMEG00000013843	BLM	64	63.232	Ailuropoda_melanoleuca
ENSTRUG00000019860	blm	99	68.195	ENSACIG00000023762	blm	99	68.124	Amphilophus_citrinellus
ENSTRUG00000019860	blm	99	68.844	ENSAOCG00000003318	blm	99	68.683	Amphiprion_ocellaris
ENSTRUG00000019860	blm	99	67.112	ENSAPEG00000018105	blm	99	66.479	Amphiprion_percula
ENSTRUG00000019860	blm	99	70.208	ENSATEG00000006421	blm	100	70.208	Anabas_testudineus
ENSTRUG00000019860	blm	73	58.739	ENSAPLG00000006878	BLM	79	62.655	Anas_platyrhynchos
ENSTRUG00000019860	blm	61	64.930	ENSACAG00000014275	BLM	64	64.151	Anolis_carolinensis
ENSTRUG00000019860	blm	76	52.704	ENSANAG00000038415	BLM	80	50.726	Aotus_nancymaae
ENSTRUG00000019860	blm	99	68.051	ENSACLG00000020354	blm	99	68.051	Astatotilapia_calliptera
ENSTRUG00000019860	blm	100	54.089	ENSAMXG00000016970	blm	82	60.994	Astyanax_mexicanus
ENSTRUG00000019860	blm	75	49.495	ENSBTAG00000020301	BLM	78	49.674	Bos_taurus
ENSTRUG00000019860	blm	76	53.059	ENSCJAG00000009803	BLM	80	50.935	Callithrix_jacchus
ENSTRUG00000019860	blm	66	62.897	ENSCAFG00000012385	BLM	66	63.005	Canis_familiaris
ENSTRUG00000019860	blm	57	72.131	ENSCAFG00020016111	BLM	87	65.663	Canis_lupus_dingo
ENSTRUG00000019860	blm	82	50.462	ENSCHIG00000010329	BLM	79	50.688	Capra_hircus
ENSTRUG00000019860	blm	81	50.551	ENSTSYG00000012368	BLM	80	50.552	Carlito_syrichta
ENSTRUG00000019860	blm	63	70.471	ENSCAPG00000017976	BLM	67	70.471	Cavia_aperea
ENSTRUG00000019860	blm	71	61.871	ENSCPOG00000001761	BLM	79	51.006	Cavia_porcellus
ENSTRUG00000019860	blm	80	51.394	ENSCCAG00000023069	BLM	79	51.426	Cebus_capucinus
ENSTRUG00000019860	blm	60	61.039	ENSCATG00000040609	BLM	75	74.754	Cercocebus_atys
ENSTRUG00000019860	blm	86	62.048	ENSCLAG00000012111	BLM	81	50.085	Chinchilla_lanigera
ENSTRUG00000019860	blm	67	60.993	ENSCSAG00000017040	BLM	63	64.459	Chlorocebus_sabaeus
ENSTRUG00000019860	blm	74	52.156	ENSCHOG00000006255	BLM	75	52.361	Choloepus_hoffmanni
ENSTRUG00000019860	blm	82	53.018	ENSCPBG00000025000	BLM	77	64.459	Chrysemys_picta_bellii
ENSTRUG00000019860	blm	99	45.626	ENSCGRG00001024897	Blm	83	50.911	Cricetulus_griseus_chok1gshd
ENSTRUG00000019860	blm	55	66.304	ENSCGRG00000016261	Blm	73	44.906	Cricetulus_griseus_crigri
ENSTRUG00000019860	blm	95	65.489	ENSCSEG00000013483	blm	99	64.955	Cynoglossus_semilaevis
ENSTRUG00000019860	blm	76	67.769	ENSCVAG00000017583	blm	98	67.769	Cyprinodon_variegatus
ENSTRUG00000019860	blm	89	71.179	ENSDARG00000077089	blm	84	67.925	Danio_rerio
ENSTRUG00000019860	blm	83	48.866	ENSDNOG00000010159	BLM	82	49.453	Dasypus_novemcinctus
ENSTRUG00000019860	blm	59	60.952	ENSDORG00000011033	Blm	75	64.631	Dipodomys_ordii
ENSTRUG00000019860	blm	51	43.132	FBgn0002906	Blm	50	41.410	Drosophila_melanogaster
ENSTRUG00000019860	blm	82	47.699	ENSEASG00005006727	BLM	81	47.739	Equus_asinus_asinus
ENSTRUG00000019860	blm	82	50.042	ENSECAG00000011405	BLM	82	50.167	Equus_caballus
ENSTRUG00000019860	blm	76	52.170	ENSEEUG00000001434	BLM	76	51.619	Erinaceus_europaeus
ENSTRUG00000019860	blm	99	56.592	ENSELUG00000019098	blm	82	71.429	Esox_lucius
ENSTRUG00000019860	blm	72	60.660	ENSFCAG00000006087	BLM	81	49.706	Felis_catus
ENSTRUG00000019860	blm	63	58.951	ENSFALG00000010981	BLM	73	62.594	Ficedula_albicollis
ENSTRUG00000019860	blm	71	57.993	ENSFDAG00000012658	BLM	77	57.993	Fukomys_damarensis
ENSTRUG00000019860	blm	99	65.363	ENSFHEG00000002553	blm	99	64.573	Fundulus_heteroclitus
ENSTRUG00000019860	blm	99	57.173	ENSGMOG00000016431	blm	90	72.102	Gadus_morhua
ENSTRUG00000019860	blm	81	51.174	ENSGALG00000008256	BLM	57	63.350	Gallus_gallus
ENSTRUG00000019860	blm	99	64.505	ENSGAFG00000001117	blm	99	68.919	Gambusia_affinis
ENSTRUG00000019860	blm	100	65.430	ENSGACG00000010863	blm	100	88.447	Gasterosteus_aculeatus
ENSTRUG00000019860	blm	64	54.104	ENSGAGG00000005383	BLM	81	68.893	Gopherus_agassizii
ENSTRUG00000019860	blm	60	61.229	ENSGGOG00000007710	BLM	76	74.267	Gorilla_gorilla
ENSTRUG00000019860	blm	99	69.906	ENSHBUG00000015943	blm	99	70.050	Haplochromis_burtoni
ENSTRUG00000019860	blm	76	52.598	ENSHGLG00000013231	BLM	81	49.793	Heterocephalus_glaber_female
ENSTRUG00000019860	blm	76	67.273	ENSHCOG00000011455	blm	100	67.306	Hippocampus_comes
ENSTRUG00000019860	blm	76	61.737	ENSIPUG00000000529	blm	86	61.223	Ictalurus_punctatus
ENSTRUG00000019860	blm	63	63.359	ENSSTOG00000005000	BLM	79	50.086	Ictidomys_tridecemlineatus
ENSTRUG00000019860	blm	60	55.806	ENSJJAG00000016322	Blm	99	48.742	Jaculus_jaculus
ENSTRUG00000019860	blm	99	69.512	ENSKMAG00000016608	blm	99	68.938	Kryptolebias_marmoratus
ENSTRUG00000019860	blm	61	78.391	ENSLBEG00000018729	blm	97	78.391	Labrus_bergylta
ENSTRUG00000019860	blm	61	63.542	ENSLACG00000006490	BLM	60	62.357	Latimeria_chalumnae
ENSTRUG00000019860	blm	88	67.290	ENSLOCG00000014302	blm	89	66.667	Lepisosteus_oculatus
ENSTRUG00000019860	blm	60	61.157	ENSMFAG00000042982	BLM	75	75.082	Macaca_fascicularis
ENSTRUG00000019860	blm	60	61.157	ENSMMUG00000019526	BLM	75	75.082	Macaca_mulatta
ENSTRUG00000019860	blm	60	61.039	ENSMNEG00000031251	BLM	75	74.754	Macaca_nemestrina
ENSTRUG00000019860	blm	60	57.683	ENSMLEG00000032934	BLM	63	60.714	Mandrillus_leucophaeus
ENSTRUG00000019860	blm	99	69.826	ENSMAMG00000008726	blm	99	69.826	Mastacembelus_armatus
ENSTRUG00000019860	blm	99	67.608	ENSMZEG00005022323	blm	99	67.466	Maylandia_zebra
ENSTRUG00000019860	blm	88	61.933	ENSMAUG00000008953	Blm	80	51.549	Mesocricetus_auratus
ENSTRUG00000019860	blm	67	61.294	ENSMICG00000034442	BLM	79	50.867	Microcebus_murinus
ENSTRUG00000019860	blm	86	62.333	ENSMOCG00000016367	Blm	64	65.128	Microtus_ochrogaster
ENSTRUG00000019860	blm	99	72.078	ENSMMOG00000006959	blm	99	71.934	Mola_mola
ENSTRUG00000019860	blm	99	69.656	ENSMALG00000007323	blm	99	69.032	Monopterus_albus
ENSTRUG00000019860	blm	69	61.252	MGP_CAROLIEiJ_G0029907	Blm	80	49.616	Mus_caroli
ENSTRUG00000019860	blm	60	61.758	ENSMUSG00000030528	Blm	59	60.973	Mus_musculus
ENSTRUG00000019860	blm	88	62.335	MGP_SPRETEiJ_G0031009	Blm	75	61.705	Mus_spretus
ENSTRUG00000019860	blm	64	50.367	ENSMPUG00000015657	BLM	56	69.910	Mustela_putorius_furo
ENSTRUG00000019860	blm	81	50.549	ENSMLUG00000014697	BLM	65	63.338	Myotis_lucifugus
ENSTRUG00000019860	blm	88	61.962	ENSNGAG00000001275	Blm	79	50.783	Nannospalax_galili
ENSTRUG00000019860	blm	99	67.445	ENSNBRG00000019702	blm	99	67.445	Neolamprologus_brichardi
ENSTRUG00000019860	blm	76	49.632	ENSNLEG00000012087	BLM	99	49.723	Nomascus_leucogenys
ENSTRUG00000019860	blm	99	41.966	ENSMEUG00000007253	BLM	79	47.437	Notamacropus_eugenii
ENSTRUG00000019860	blm	57	63.874	ENSOPRG00000011667	BLM	60	63.874	Ochotona_princeps
ENSTRUG00000019860	blm	76	50.518	ENSODEG00000015373	BLM	99	50.567	Octodon_degus
ENSTRUG00000019860	blm	99	64.148	ENSONIG00000015193	blm	99	64.325	Oreochromis_niloticus
ENSTRUG00000019860	blm	56	65.553	ENSOANG00000009316	-	100	65.039	Ornithorhynchus_anatinus
ENSTRUG00000019860	blm	99	68.520	ENSORLG00000008110	blm	99	68.303	Oryzias_latipes
ENSTRUG00000019860	blm	99	68.014	ENSORLG00020004812	blm	99	67.870	Oryzias_latipes_hni
ENSTRUG00000019860	blm	99	68.303	ENSORLG00015018640	blm	99	70.977	Oryzias_latipes_hsok
ENSTRUG00000019860	blm	99	67.505	ENSOMEG00000023545	blm	99	66.786	Oryzias_melastigma
ENSTRUG00000019860	blm	67	60.000	ENSOGAG00000005708	BLM	64	62.326	Otolemur_garnettii
ENSTRUG00000019860	blm	99	45.302	ENSOARG00000012875	BLM	79	50.384	Ovis_aries
ENSTRUG00000019860	blm	60	61.466	ENSPPAG00000032173	BLM	60	72.746	Pan_paniscus
ENSTRUG00000019860	blm	67	60.542	ENSPPRG00000002471	BLM	79	50.517	Panthera_pardus
ENSTRUG00000019860	blm	67	60.071	ENSPTIG00000016168	BLM	79	50.130	Panthera_tigris_altaica
ENSTRUG00000019860	blm	60	61.111	ENSPTRG00000007460	BLM	60	72.485	Pan_troglodytes
ENSTRUG00000019860	blm	60	61.275	ENSPANG00000018572	BLM	75	75.082	Papio_anubis
ENSTRUG00000019860	blm	61	72.491	ENSPKIG00000008954	blm	84	60.888	Paramormyrops_kingsleyae
ENSTRUG00000019860	blm	72	67.611	ENSPMGG00000006629	blm	100	67.879	Periophthalmus_magnuspinnatus
ENSTRUG00000019860	blm	77	62.305	ENSPEMG00000017348	Blm	67	64.496	Peromyscus_maniculatus_bairdii
ENSTRUG00000019860	blm	53	57.355	ENSPMAG00000000445	blm	99	57.547	Petromyzon_marinus
ENSTRUG00000019860	blm	80	50.470	ENSPCIG00000006609	BLM	79	50.512	Phascolarctos_cinereus
ENSTRUG00000019860	blm	99	64.921	ENSPFOG00000005059	blm	99	65.258	Poecilia_formosa
ENSTRUG00000019860	blm	99	64.706	ENSPLAG00000017344	blm	99	65.043	Poecilia_latipinna
ENSTRUG00000019860	blm	99	64.706	ENSPMEG00000000321	blm	99	65.043	Poecilia_mexicana
ENSTRUG00000019860	blm	99	64.306	ENSPREG00000007715	blm	99	64.735	Poecilia_reticulata
ENSTRUG00000019860	blm	67	60.165	ENSPPYG00000006784	BLM	64	63.567	Pongo_abelii
ENSTRUG00000019860	blm	60	59.905	ENSPCAG00000008960	BLM	55	62.025	Procavia_capensis
ENSTRUG00000019860	blm	80	45.061	ENSPCOG00000000439	BLM	61	55.400	Propithecus_coquereli
ENSTRUG00000019860	blm	72	74.426	ENSPVAG00000011642	BLM	62	74.426	Pteropus_vampyrus
ENSTRUG00000019860	blm	99	61.831	ENSPNYG00000010956	blm	99	61.408	Pundamilia_nyererei
ENSTRUG00000019860	blm	99	56.717	ENSPNAG00000011714	blm	82	61.408	Pygocentrus_nattereri
ENSTRUG00000019860	blm	60	61.283	ENSRNOG00000011213	Blm	81	49.659	Rattus_norvegicus
ENSTRUG00000019860	blm	67	64.422	ENSRBIG00000029656	BLM	76	74.919	Rhinopithecus_bieti
ENSTRUG00000019860	blm	57	64.422	ENSRROG00000037871	BLM	76	74.919	Rhinopithecus_roxellana
ENSTRUG00000019860	blm	67	53.518	ENSSBOG00000030957	BLM	77	50.459	Saimiri_boliviensis_boliviensis
ENSTRUG00000019860	blm	64	69.953	ENSSFOG00015015462	blm	72	69.357	Scleropages_formosus
ENSTRUG00000019860	blm	99	70.274	ENSSMAG00000001120	blm	99	70.130	Scophthalmus_maximus
ENSTRUG00000019860	blm	99	71.183	ENSSDUG00000010955	blm	99	71.183	Seriola_dumerili
ENSTRUG00000019860	blm	99	71.470	ENSSLDG00000000634	blm	99	71.470	Seriola_lalandi_dorsalis
ENSTRUG00000019860	blm	60	56.837	ENSSARG00000006398	BLM	59	58.861	Sorex_araneus
ENSTRUG00000019860	blm	80	50.440	ENSSPUG00000000013	BLM	96	49.691	Sphenodon_punctatus
ENSTRUG00000019860	blm	99	69.498	ENSSPAG00000013999	blm	99	69.498	Stegastes_partitus
ENSTRUG00000019860	blm	89	48.281	ENSSSCG00000001816	BLM	80	51.647	Sus_scrofa
ENSTRUG00000019860	blm	80	45.501	ENSTGUG00000009959	-	79	55.752	Taeniopygia_guttata
ENSTRUG00000019860	blm	99	73.852	ENSTNIG00000019246	blm	100	73.781	Tetraodon_nigroviridis
ENSTRUG00000019860	blm	81	50.296	ENSTTRG00000016386	BLM	80	49.958	Tursiops_truncatus
ENSTRUG00000019860	blm	69	63.613	ENSUMAG00000009105	BLM	96	66.207	Ursus_maritimus
ENSTRUG00000019860	blm	60	57.294	ENSVPAG00000000085	BLM	55	59.747	Vicugna_pacos
ENSTRUG00000019860	blm	62	74.670	ENSVVUG00000006402	BLM	62	76.423	Vulpes_vulpes
ENSTRUG00000019860	blm	99	45.767	ENSXETG00000007847	blm	64	65.473	Xenopus_tropicalis
ENSTRUG00000019860	blm	99	62.316	ENSXCOG00000020227	blm	99	62.588	Xiphophorus_couchianus
ENSTRUG00000019860	blm	99	65.401	ENSXMAG00000002951	blm	99	65.616	Xiphophorus_maculatus