EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000020580 (Gene tree)
Gene ID: 101079836
Gene Symbol: gar1
Alias: nola1|zgc:56086
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 1511 bases
Position: chr14:10533412-10534922
Accession: 101079836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000053356	Gar1	PF04410.14	8.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000054871	-	630	XM_003970640	ENSTRUP00000053356	209 (aa)	XP_003970689	-

Gene Model

Click here to download ENSTRUG00000020580's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000020580's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000020580	gar1	52	96.296	ENSAPOG00000019754	gar1	51	96.296	Acanthochromis_polyacanthus
ENSTRUG00000020580	gar1	69	78.472	ENSAMEG00000004605	GAR1	67	83.824	Ailuropoda_melanoleuca
ENSTRUG00000020580	gar1	52	96.296	ENSAOCG00000020947	gar1	50	96.296	Amphiprion_ocellaris
ENSTRUG00000020580	gar1	52	96.296	ENSAPEG00000001676	gar1	50	96.296	Amphiprion_percula
ENSTRUG00000020580	gar1	52	95.370	ENSATEG00000003733	gar1	50	95.370	Anabas_testudineus
ENSTRUG00000020580	gar1	51	87.736	ENSAPLG00000010926	GAR1	59	87.736	Anas_platyrhynchos
ENSTRUG00000020580	gar1	51	88.679	ENSACAG00000010031	GAR1	50	88.679	Anolis_carolinensis
ENSTRUG00000020580	gar1	64	82.707	ENSBTAG00000000748	GAR1	62	82.707	Bos_taurus
ENSTRUG00000020580	gar1	59	82.258	ENSCAFG00020015566	GAR1	61	89.744	Canis_lupus_dingo
ENSTRUG00000020580	gar1	53	89.091	ENSCHIG00000016026	-	51	90.654	Capra_hircus
ENSTRUG00000020580	gar1	83	69.403	ENSCHIG00000011049	-	54	77.570	Capra_hircus
ENSTRUG00000020580	gar1	51	83.178	ENSTSYG00000026632	-	55	83.178	Carlito_syrichta
ENSTRUG00000020580	gar1	51	90.654	ENSTSYG00000013668	-	50	90.654	Carlito_syrichta
ENSTRUG00000020580	gar1	53	89.091	ENSCATG00000021854	GAR1	54	90.654	Cercocebus_atys
ENSTRUG00000020580	gar1	53	88.182	ENSCLAG00000005335	GAR1	69	89.091	Chinchilla_lanigera
ENSTRUG00000020580	gar1	51	88.785	ENSCSAG00000003922	GAR1	54	90.654	Chlorocebus_sabaeus
ENSTRUG00000020580	gar1	51	89.623	ENSCPBG00000004310	GAR1	54	89.623	Chrysemys_picta_bellii
ENSTRUG00000020580	gar1	69	60.417	ENSCING00000005744	-	58	68.103	Ciona_intestinalis
ENSTRUG00000020580	gar1	52	94.444	ENSCVAG00000002103	gar1	52	94.444	Cyprinodon_variegatus
ENSTRUG00000020580	gar1	59	84.677	ENSDNOG00000037632	GAR1	60	88.136	Dasypus_novemcinctus
ENSTRUG00000020580	gar1	50	57.692	FBgn0011824	CG4038	73	52.027	Drosophila_melanogaster
ENSTRUG00000020580	gar1	65	83.824	ENSEASG00005004658	GAR1	50	91.589	Equus_asinus_asinus
ENSTRUG00000020580	gar1	65	83.088	ENSECAG00000013624	GAR1	59	89.744	Equus_caballus
ENSTRUG00000020580	gar1	54	89.381	ENSFCAG00000040791	-	68	81.690	Felis_catus
ENSTRUG00000020580	gar1	51	56.075	ENSFCAG00000025841	-	50	58.879	Felis_catus
ENSTRUG00000020580	gar1	53	95.495	ENSFHEG00000008068	gar1	50	95.370	Fundulus_heteroclitus
ENSTRUG00000020580	gar1	52	90.741	ENSGMOG00000012419	gar1	73	75.301	Gadus_morhua
ENSTRUG00000020580	gar1	52	95.370	ENSGAFG00000016833	gar1	66	80.519	Gambusia_affinis
ENSTRUG00000020580	gar1	50	90.385	ENSGAGG00000004393	GAR1	53	90.385	Gopherus_agassizii
ENSTRUG00000020580	gar1	56	71.552	ENSGGOG00000036205	-	68	69.403	Gorilla_gorilla
ENSTRUG00000020580	gar1	51	91.589	ENSHGLG00000000493	GAR1	72	90.909	Heterocephalus_glaber_female
ENSTRUG00000020580	gar1	53	92.727	ENSIPUG00000003194	gar1	51	92.593	Ictalurus_punctatus
ENSTRUG00000020580	gar1	52	88.073	ENSSTOG00000005577	GAR1	84	87.692	Ictidomys_tridecemlineatus
ENSTRUG00000020580	gar1	53	93.694	ENSKMAG00000010402	gar1	51	94.444	Kryptolebias_marmoratus
ENSTRUG00000020580	gar1	51	86.792	ENSLACG00000003306	GAR1	64	86.792	Latimeria_chalumnae
ENSTRUG00000020580	gar1	52	77.778	ENSMFAG00000003572	-	52	77.570	Macaca_fascicularis
ENSTRUG00000020580	gar1	51	88.679	ENSMGAG00000011058	GAR1	87	80.667	Meleagris_gallopavo
ENSTRUG00000020580	gar1	51	92.523	ENSMAUG00000016788	Gar1	70	90.909	Mesocricetus_auratus
ENSTRUG00000020580	gar1	51	91.589	ENSMOCG00000001340	Gar1	70	90.909	Microtus_ochrogaster
ENSTRUG00000020580	gar1	51	93.458	ENSMMOG00000004156	gar1	53	92.593	Mola_mola
ENSTRUG00000020580	gar1	55	84.211	ENSMODG00000005897	GAR1	69	65.455	Monodelphis_domestica
ENSTRUG00000020580	gar1	51	94.393	ENSMALG00000009672	gar1	50	93.519	Monopterus_albus
ENSTRUG00000020580	gar1	51	91.589	MGP_CAROLIEiJ_G0025627	Gar1	70	90.909	Mus_caroli
ENSTRUG00000020580	gar1	53	90.000	ENSMUSG00000028010	Gar1	70	90.909	Mus_musculus
ENSTRUG00000020580	gar1	53	90.000	MGP_PahariEiJ_G0027076	Gar1	70	90.909	Mus_pahari
ENSTRUG00000020580	gar1	53	90.000	MGP_SPRETEiJ_G0026580	Gar1	70	90.909	Mus_spretus
ENSTRUG00000020580	gar1	54	89.381	ENSMPUG00000008615	GAR1	68	81.690	Mustela_putorius_furo
ENSTRUG00000020580	gar1	53	89.091	ENSNGAG00000008268	Gar1	84	87.692	Nannospalax_galili
ENSTRUG00000020580	gar1	53	74.775	ENSNLEG00000034282	-	54	75.701	Nomascus_leucogenys
ENSTRUG00000020580	gar1	53	89.091	ENSNLEG00000016578	GAR1	50	90.654	Nomascus_leucogenys
ENSTRUG00000020580	gar1	51	89.720	ENSODEG00000011083	GAR1	55	89.720	Octodon_degus
ENSTRUG00000020580	gar1	51	89.623	ENSOANG00000003665	GAR1	78	71.264	Ornithorhynchus_anatinus
ENSTRUG00000020580	gar1	51	90.654	ENSOCUG00000003901	GAR1	50	90.654	Oryctolagus_cuniculus
ENSTRUG00000020580	gar1	65	81.618	ENSOGAG00000004693	GAR1	50	90.654	Otolemur_garnettii
ENSTRUG00000020580	gar1	51	90.654	ENSOARG00000004910	GAR1	51	90.654	Ovis_aries
ENSTRUG00000020580	gar1	51	90.654	ENSPPAG00000014081	GAR1	54	90.654	Pan_paniscus
ENSTRUG00000020580	gar1	54	89.381	ENSPPRG00000023697	GAR1	68	81.690	Panthera_pardus
ENSTRUG00000020580	gar1	54	89.381	ENSPTIG00000021565	GAR1	68	81.690	Panthera_tigris_altaica
ENSTRUG00000020580	gar1	53	89.091	ENSPTRG00000016364	GAR1	54	90.654	Pan_troglodytes
ENSTRUG00000020580	gar1	51	92.523	ENSPEMG00000015838	Gar1	70	90.909	Peromyscus_maniculatus_bairdii
ENSTRUG00000020580	gar1	55	84.211	ENSPCIG00000018912	GAR1	54	75.194	Phascolarctos_cinereus
ENSTRUG00000020580	gar1	52	94.444	ENSPFOG00000024155	gar1	51	94.444	Poecilia_formosa
ENSTRUG00000020580	gar1	52	94.444	ENSPLAG00000015056	gar1	51	94.444	Poecilia_latipinna
ENSTRUG00000020580	gar1	52	95.370	ENSPMEG00000009320	gar1	52	95.370	Poecilia_mexicana
ENSTRUG00000020580	gar1	51	88.785	ENSPCOG00000027049	GAR1	55	90.654	Propithecus_coquereli
ENSTRUG00000020580	gar1	52	92.593	ENSRNOG00000061146	Gar1	63	92.523	Rattus_norvegicus
ENSTRUG00000020580	gar1	51	90.654	ENSRBIG00000019547	GAR1	54	90.654	Rhinopithecus_bieti
ENSTRUG00000020580	gar1	54	74.107	ENSRBIG00000042411	-	52	74.766	Rhinopithecus_bieti
ENSTRUG00000020580	gar1	53	89.091	ENSRROG00000028454	GAR1	54	90.654	Rhinopithecus_roxellana
ENSTRUG00000020580	gar1	54	74.107	ENSRROG00000044348	-	51	74.766	Rhinopithecus_roxellana
ENSTRUG00000020580	gar1	51	90.654	ENSSBOG00000024785	GAR1	50	90.654	Saimiri_boliviensis_boliviensis
ENSTRUG00000020580	gar1	50	89.423	ENSSHAG00000002161	GAR1	55	75.194	Sarcophilus_harrisii
ENSTRUG00000020580	gar1	52	92.593	ENSSMAG00000009976	gar1	50	92.593	Scophthalmus_maximus
ENSTRUG00000020580	gar1	52	95.370	ENSSLDG00000023264	gar1	51	95.370	Seriola_lalandi_dorsalis
ENSTRUG00000020580	gar1	51	90.566	ENSSPUG00000008707	GAR1	59	90.566	Sphenodon_punctatus
ENSTRUG00000020580	gar1	64	84.211	ENSSSCG00000009137	GAR1	53	90.654	Sus_scrofa
ENSTRUG00000020580	gar1	78	97.546	ENSTNIG00000013023	gar1	93	97.546	Tetraodon_nigroviridis
ENSTRUG00000020580	gar1	59	82.258	ENSUAMG00000005652	GAR1	61	89.744	Ursus_americanus
ENSTRUG00000020580	gar1	54	89.381	ENSUMAG00000000776	GAR1	69	81.690	Ursus_maritimus
ENSTRUG00000020580	gar1	83	84.211	ENSVPAG00000009844	GAR1	65	88.189	Vicugna_pacos
ENSTRUG00000020580	gar1	51	90.654	ENSVVUG00000017612	GAR1	55	90.654	Vulpes_vulpes