EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000020842 (Gene tree)
Gene ID: 101066975
Gene Symbol: polr2j
Alias: rpb11|zgc:110005
Full Name: RNA polymerase II subunit J
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 4276 bases
Position: chrHE592072.1:43999-48274
Accession: 101066975
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000056378	RNA_pol_L_2	PF13656.6	3.2e-29	1	1
ENSTRUP00000056378	RNA_pol_L	PF01193.24	1.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000054210	-	3656	XM_003976865	ENSTRUP00000056378	117 (aa)	XP_003976914	H2RNK5

Gene Model

Click here to download ENSTRUG00000020842's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000020842's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000020842	polr2j	63	35.135	ENSTRUG00000019741	polr1d	65	35.135

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000020842	polr2j	100	95.726	ENSG00000005075	POLR2J	100	95.726	Homo_sapiens
ENSTRUG00000020842	polr2j	91	93.458	ENSG00000228049	POLR2J2	94	90.826	Homo_sapiens
ENSTRUG00000020842	polr2j	100	99.145	ENSAPOG00000019538	polr2j	100	99.145	Acanthochromis_polyacanthus
ENSTRUG00000020842	polr2j	100	88.189	ENSAMEG00000015480	-	100	88.189	Ailuropoda_melanoleuca
ENSTRUG00000020842	polr2j	93	76.364	ENSACIG00000014549	POLR2J2	91	76.364	Amphilophus_citrinellus
ENSTRUG00000020842	polr2j	100	98.291	ENSAOCG00000006937	polr2j	100	98.291	Amphiprion_ocellaris
ENSTRUG00000020842	polr2j	100	99.145	ENSAPEG00000021761	polr2j	100	99.145	Amphiprion_percula
ENSTRUG00000020842	polr2j	100	99.145	ENSATEG00000009731	polr2j	100	99.145	Anabas_testudineus
ENSTRUG00000020842	polr2j	100	99.145	ENSATEG00000013312	-	100	99.145	Anabas_testudineus
ENSTRUG00000020842	polr2j	86	93.069	ENSAPLG00000003744	-	100	93.069	Anas_platyrhynchos
ENSTRUG00000020842	polr2j	100	88.034	ENSACAG00000000251	POLR2J	100	88.034	Anolis_carolinensis
ENSTRUG00000020842	polr2j	100	99.145	ENSACLG00000014564	polr2j	100	99.145	Astatotilapia_calliptera
ENSTRUG00000020842	polr2j	100	97.436	ENSAMXG00000007517	polr2j	100	97.436	Astyanax_mexicanus
ENSTRUG00000020842	polr2j	62	64.384	ENSBTAG00000048046	-	61	64.384	Bos_taurus
ENSTRUG00000020842	polr2j	94	68.182	WBGene00012187	rpb-11	89	68.182	Caenorhabditis_elegans
ENSTRUG00000020842	polr2j	100	95.726	ENSCJAG00000016203	-	100	95.726	Callithrix_jacchus
ENSTRUG00000020842	polr2j	100	95.726	ENSCAFG00000013683	-	100	95.726	Canis_familiaris
ENSTRUG00000020842	polr2j	85	94.949	ENSTSYG00000029243	-	85	94.949	Carlito_syrichta
ENSTRUG00000020842	polr2j	100	95.726	ENSCPOG00000001401	-	100	95.726	Cavia_porcellus
ENSTRUG00000020842	polr2j	100	73.504	ENSCATG00000016595	-	96	84.615	Cercocebus_atys
ENSTRUG00000020842	polr2j	100	95.726	ENSCLAG00000005238	-	100	95.726	Chinchilla_lanigera
ENSTRUG00000020842	polr2j	100	95.726	ENSCSAG00000018092	-	100	95.726	Chlorocebus_sabaeus
ENSTRUG00000020842	polr2j	100	82.051	ENSCING00000020531	-	100	82.051	Ciona_intestinalis
ENSTRUG00000020842	polr2j	100	80.342	ENSCSAVG00000006948	-	100	80.342	Ciona_savignyi
ENSTRUG00000020842	polr2j	100	95.726	ENSCGRG00001012814	Polr2j	100	95.726	Cricetulus_griseus_chok1gshd
ENSTRUG00000020842	polr2j	100	81.197	ENSCGRG00000008433	Polr2j	100	81.197	Cricetulus_griseus_crigri
ENSTRUG00000020842	polr2j	100	96.581	ENSCSEG00000020352	polr2j	100	96.581	Cynoglossus_semilaevis
ENSTRUG00000020842	polr2j	100	98.291	ENSCVAG00000014267	polr2j	100	98.291	Cyprinodon_variegatus
ENSTRUG00000020842	polr2j	100	96.581	ENSDARG00000035146	polr2j	100	96.581	Danio_rerio
ENSTRUG00000020842	polr2j	100	95.726	ENSDORG00000005934	Polr2j	100	95.726	Dipodomys_ordii
ENSTRUG00000020842	polr2j	98	79.130	FBgn0032634	Rpb11	98	79.130	Drosophila_melanogaster
ENSTRUG00000020842	polr2j	100	64.957	ENSEBUG00000016100	polr2j	100	64.957	Eptatretus_burgeri
ENSTRUG00000020842	polr2j	100	95.726	ENSEASG00005016864	-	100	95.726	Equus_asinus_asinus
ENSTRUG00000020842	polr2j	100	97.436	ENSELUG00000012822	polr2j	100	97.436	Esox_lucius
ENSTRUG00000020842	polr2j	100	95.726	ENSFCAG00000000377	-	100	95.726	Felis_catus
ENSTRUG00000020842	polr2j	100	95.726	ENSFALG00000009523	POLR2J	100	95.726	Ficedula_albicollis
ENSTRUG00000020842	polr2j	100	95.726	ENSFDAG00000010507	-	100	95.726	Fukomys_damarensis
ENSTRUG00000020842	polr2j	100	99.145	ENSFHEG00000006625	polr2j	100	99.145	Fundulus_heteroclitus
ENSTRUG00000020842	polr2j	100	97.436	ENSGMOG00000018207	polr2j	100	97.436	Gadus_morhua
ENSTRUG00000020842	polr2j	100	95.726	ENSGALG00000030808	-	100	95.726	Gallus_gallus
ENSTRUG00000020842	polr2j	100	99.145	ENSGAFG00000019555	polr2j	100	99.145	Gambusia_affinis
ENSTRUG00000020842	polr2j	100	99.145	ENSGACG00000003310	polr2j	100	99.145	Gasterosteus_aculeatus
ENSTRUG00000020842	polr2j	97	85.841	ENSGAGG00000018304	-	96	85.841	Gopherus_agassizii
ENSTRUG00000020842	polr2j	85	90.000	ENSGGOG00000004519	-	80	90.000	Gorilla_gorilla
ENSTRUG00000020842	polr2j	100	99.145	ENSHBUG00000008467	polr2j	100	99.145	Haplochromis_burtoni
ENSTRUG00000020842	polr2j	100	95.726	ENSHGLG00000013598	POLR2J	100	95.726	Heterocephalus_glaber_female
ENSTRUG00000020842	polr2j	100	95.726	ENSHGLG00100011242	POLR2J	100	95.726	Heterocephalus_glaber_male
ENSTRUG00000020842	polr2j	100	97.436	ENSHCOG00000014827	polr2j	68	97.436	Hippocampus_comes
ENSTRUG00000020842	polr2j	100	97.436	ENSIPUG00000023960	polr2j	100	97.436	Ictalurus_punctatus
ENSTRUG00000020842	polr2j	100	95.726	ENSSTOG00000006377	POLR2J	100	95.726	Ictidomys_tridecemlineatus
ENSTRUG00000020842	polr2j	100	95.726	ENSJJAG00000013854	-	100	95.726	Jaculus_jaculus
ENSTRUG00000020842	polr2j	100	90.598	ENSJJAG00000018834	-	100	90.598	Jaculus_jaculus
ENSTRUG00000020842	polr2j	100	99.145	ENSKMAG00000014581	polr2j	79	99.145	Kryptolebias_marmoratus
ENSTRUG00000020842	polr2j	100	99.145	ENSLBEG00000005885	polr2j	100	99.145	Labrus_bergylta
ENSTRUG00000020842	polr2j	100	97.436	ENSLOCG00000001885	polr2j	89	97.436	Lepisosteus_oculatus
ENSTRUG00000020842	polr2j	100	95.726	ENSLAFG00000021507	-	100	95.726	Loxodonta_africana
ENSTRUG00000020842	polr2j	100	86.154	ENSMMUG00000012019	POLR2J	100	86.154	Macaca_mulatta
ENSTRUG00000020842	polr2j	100	99.145	ENSMAMG00000009374	polr2j	100	99.145	Mastacembelus_armatus
ENSTRUG00000020842	polr2j	100	99.145	ENSMZEG00005011932	polr2j	100	99.145	Maylandia_zebra
ENSTRUG00000020842	polr2j	100	95.726	ENSMGAG00000003534	POLR2J	100	95.726	Meleagris_gallopavo
ENSTRUG00000020842	polr2j	100	95.726	ENSMAUG00000013049	Polr2j	100	95.726	Mesocricetus_auratus
ENSTRUG00000020842	polr2j	80	90.426	ENSMICG00000026811	-	94	90.426	Microcebus_murinus
ENSTRUG00000020842	polr2j	100	95.726	ENSMOCG00000001294	Polr2j	100	95.726	Microtus_ochrogaster
ENSTRUG00000020842	polr2j	100	98.291	ENSMMOG00000013265	polr2j	100	98.291	Mola_mola
ENSTRUG00000020842	polr2j	100	87.500	ENSMODG00000013617	-	100	87.500	Monodelphis_domestica
ENSTRUG00000020842	polr2j	100	99.145	ENSMALG00000020749	polr2j	100	99.145	Monopterus_albus
ENSTRUG00000020842	polr2j	100	95.726	MGP_CAROLIEiJ_G0027851	Polr2j	100	95.726	Mus_caroli
ENSTRUG00000020842	polr2j	100	95.726	ENSMUSG00000039771	Polr2j	100	95.726	Mus_musculus
ENSTRUG00000020842	polr2j	100	95.726	MGP_PahariEiJ_G0024434	Polr2j	100	95.726	Mus_pahari
ENSTRUG00000020842	polr2j	100	95.726	MGP_SPRETEiJ_G0028853	Polr2j	100	95.726	Mus_spretus
ENSTRUG00000020842	polr2j	100	95.726	ENSMLUG00000010467	POLR2J	100	95.726	Myotis_lucifugus
ENSTRUG00000020842	polr2j	100	95.726	ENSNGAG00000023412	Polr2j	100	95.726	Nannospalax_galili
ENSTRUG00000020842	polr2j	66	96.104	ENSNBRG00000006580	polr2j	59	96.104	Neolamprologus_brichardi
ENSTRUG00000020842	polr2j	100	73.504	ENSODEG00000008559	-	100	73.504	Octodon_degus
ENSTRUG00000020842	polr2j	100	95.726	ENSODEG00000015648	-	100	95.726	Octodon_degus
ENSTRUG00000020842	polr2j	100	99.145	ENSONIG00000000259	polr2j	100	99.145	Oreochromis_niloticus
ENSTRUG00000020842	polr2j	100	93.162	ENSOANG00000020912	POLR2J	100	93.162	Ornithorhynchus_anatinus
ENSTRUG00000020842	polr2j	100	88.189	ENSOCUG00000023609	POLR2J	100	88.189	Oryctolagus_cuniculus
ENSTRUG00000020842	polr2j	100	99.145	ENSORLG00000029046	polr2j	83	99.145	Oryzias_latipes
ENSTRUG00000020842	polr2j	100	99.145	ENSORLG00020007625	polr2j	83	99.145	Oryzias_latipes_hni
ENSTRUG00000020842	polr2j	100	99.145	ENSORLG00015003457	polr2j	83	99.145	Oryzias_latipes_hsok
ENSTRUG00000020842	polr2j	100	98.291	ENSOMEG00000002097	polr2j	100	98.291	Oryzias_melastigma
ENSTRUG00000020842	polr2j	100	71.875	ENSOGAG00000008250	-	100	71.875	Otolemur_garnettii
ENSTRUG00000020842	polr2j	100	95.726	ENSOARG00000014204	-	98	95.726	Ovis_aries
ENSTRUG00000020842	polr2j	100	95.726	ENSPPRG00000012439	-	100	95.726	Panthera_pardus
ENSTRUG00000020842	polr2j	97	86.842	ENSPTIG00000018714	-	100	92.233	Panthera_tigris_altaica
ENSTRUG00000020842	polr2j	85	94.000	ENSPSIG00000010173	-	100	94.000	Pelodiscus_sinensis
ENSTRUG00000020842	polr2j	100	99.145	ENSPMGG00000021256	polr2j	100	99.145	Periophthalmus_magnuspinnatus
ENSTRUG00000020842	polr2j	100	95.726	ENSPEMG00000015733	Polr2j	100	95.726	Peromyscus_maniculatus_bairdii
ENSTRUG00000020842	polr2j	100	95.726	ENSPCIG00000009026	-	100	95.726	Phascolarctos_cinereus
ENSTRUG00000020842	polr2j	100	99.145	ENSPFOG00000012001	polr2j	99	99.145	Poecilia_formosa
ENSTRUG00000020842	polr2j	100	99.145	ENSPLAG00000014075	polr2j	100	99.145	Poecilia_latipinna
ENSTRUG00000020842	polr2j	100	99.145	ENSPMEG00000020585	polr2j	100	99.145	Poecilia_mexicana
ENSTRUG00000020842	polr2j	100	99.145	ENSPREG00000015255	polr2j	100	99.145	Poecilia_reticulata
ENSTRUG00000020842	polr2j	100	95.726	ENSPCOG00000024573	-	100	95.726	Propithecus_coquereli
ENSTRUG00000020842	polr2j	99	89.655	ENSPVAG00000017770	-	66	89.655	Pteropus_vampyrus
ENSTRUG00000020842	polr2j	100	99.145	ENSPNYG00000014832	polr2j	100	99.145	Pundamilia_nyererei
ENSTRUG00000020842	polr2j	100	94.872	ENSPNAG00000016595	polr2j	100	94.872	Pygocentrus_nattereri
ENSTRUG00000020842	polr2j	100	95.726	ENSRNOG00000001430	Polr2j	100	95.726	Rattus_norvegicus
ENSTRUG00000020842	polr2j	100	95.726	ENSSBOG00000025579	-	100	95.726	Saimiri_boliviensis_boliviensis
ENSTRUG00000020842	polr2j	59	98.551	ENSSHAG00000010443	-	81	98.551	Sarcophilus_harrisii
ENSTRUG00000020842	polr2j	93	95.413	ENSSFOG00015003371	polr2j	83	95.413	Scleropages_formosus
ENSTRUG00000020842	polr2j	100	99.145	ENSSMAG00000006729	polr2j	100	99.145	Scophthalmus_maximus
ENSTRUG00000020842	polr2j	100	99.145	ENSSDUG00000018490	polr2j	100	99.145	Seriola_dumerili
ENSTRUG00000020842	polr2j	100	99.145	ENSSLDG00000022354	polr2j	100	99.145	Seriola_lalandi_dorsalis
ENSTRUG00000020842	polr2j	100	95.726	ENSSPUG00000010802	-	100	95.726	Sphenodon_punctatus
ENSTRUG00000020842	polr2j	100	99.145	ENSSPAG00000021953	polr2j	100	99.145	Stegastes_partitus
ENSTRUG00000020842	polr2j	100	95.726	ENSSSCG00000007688	-	100	95.726	Sus_scrofa
ENSTRUG00000020842	polr2j	100	78.632	ENSSSCG00000003703	-	83	78.632	Sus_scrofa
ENSTRUG00000020842	polr2j	85	94.000	ENSTGUG00000004501	-	100	94.000	Taeniopygia_guttata
ENSTRUG00000020842	polr2j	59	98.551	ENSTGUG00000004510	-	100	98.551	Taeniopygia_guttata
ENSTRUG00000020842	polr2j	100	99.145	ENSTNIG00000002994	polr2j	100	99.145	Tetraodon_nigroviridis
ENSTRUG00000020842	polr2j	91	80.374	ENSTBEG00000005797	-	70	80.374	Tupaia_belangeri
ENSTRUG00000020842	polr2j	100	95.726	ENSUAMG00000011310	-	100	95.726	Ursus_americanus
ENSTRUG00000020842	polr2j	100	95.726	ENSUMAG00000012594	-	100	95.726	Ursus_maritimus
ENSTRUG00000020842	polr2j	100	94.017	ENSXETG00000001108	polr2j	100	94.017	Xenopus_tropicalis
ENSTRUG00000020842	polr2j	100	99.145	ENSXMAG00000012422	polr2j	100	99.145	Xiphophorus_maculatus