EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000020940 (Gene tree)
Gene ID: 101073060
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 86081 bases
Position: chr5:2485292-2571372
Accession: 101073060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000054299	Fox-1_C	PF12414.8	2e-41	1	1
ENSTRUP00000052719	Fox-1_C	PF12414.8	2.2e-41	1	1
ENSTRUP00000054299	RRM_1	PF00076.22	2.3e-17	1	1
ENSTRUP00000052719	RRM_1	PF00076.22	2.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000054869	-	4573	XM_003964340	ENSTRUP00000052719	380 (aa)	XP_003964389	UPI000298BA63
ENSTRUT00000056555	-	4548	XM_011603666	ENSTRUP00000054299	357 (aa)	XP_011601968	-

Gene Model

Click here to download ENSTRUG00000020940's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000020940's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000020940	rbfox1	97	63.788	ENSTRUG00000004894	rbfox3b	96	63.510
ENSTRUG00000020940	rbfox1	79	50.992	ENSTRUG00000007739	-	84	55.298
ENSTRUG00000020940	rbfox1	92	52.478	ENSTRUG00000015905	rbfox1l	77	59.786

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000020940	rbfox1	99	81.003	ENSG00000078328	RBFOX1	98	80.739	Homo_sapiens
ENSTRUG00000020940	rbfox1	100	93.734	ENSAPOG00000003197	rbfox1	98	93.473	Acanthochromis_polyacanthus
ENSTRUG00000020940	rbfox1	66	73.617	ENSAMEG00000008605	RBFOX1	88	73.191	Ailuropoda_melanoleuca
ENSTRUG00000020940	rbfox1	68	75.556	ENSACIG00000005478	rbfox1	68	75.836	Amphilophus_citrinellus
ENSTRUG00000020940	rbfox1	79	89.789	ENSAOCG00000008283	rbfox1	97	90.813	Amphiprion_ocellaris
ENSTRUG00000020940	rbfox1	96	73.491	ENSAPEG00000010636	rbfox1	100	75.853	Amphiprion_percula
ENSTRUG00000020940	rbfox1	79	90.877	ENSATEG00000007513	rbfox1	97	90.845	Anabas_testudineus
ENSTRUG00000020940	rbfox1	99	76.167	ENSAPLG00000013263	RBFOX1	98	76.167	Anas_platyrhynchos
ENSTRUG00000020940	rbfox1	99	73.284	ENSACAG00000004013	RBFOX1	98	73.284	Anolis_carolinensis
ENSTRUG00000020940	rbfox1	99	81.530	ENSANAG00000029527	RBFOX1	97	81.266	Aotus_nancymaae
ENSTRUG00000020940	rbfox1	66	77.637	ENSAMXG00000002431	rbfox1	64	77.637	Astyanax_mexicanus
ENSTRUG00000020940	rbfox1	100	73.171	ENSBTAG00000007210	RBFOX1	98	73.415	Bos_taurus
ENSTRUG00000020940	rbfox1	99	79.474	ENSCJAG00000017351	RBFOX1	93	79.474	Callithrix_jacchus
ENSTRUG00000020940	rbfox1	99	73.956	ENSCAFG00000019082	RBFOX1	93	74.201	Canis_familiaris
ENSTRUG00000020940	rbfox1	72	68.641	ENSCAFG00020024881	RBFOX1	76	68.990	Canis_lupus_dingo
ENSTRUG00000020940	rbfox1	100	73.659	ENSCHIG00000023549	RBFOX1	98	73.902	Capra_hircus
ENSTRUG00000020940	rbfox1	99	81.217	ENSTSYG00000005334	RBFOX1	100	81.217	Carlito_syrichta
ENSTRUG00000020940	rbfox1	99	76.049	ENSCAPG00000017669	RBFOX1	100	76.049	Cavia_aperea
ENSTRUG00000020940	rbfox1	100	75.550	ENSCPOG00000011314	RBFOX1	100	75.550	Cavia_porcellus
ENSTRUG00000020940	rbfox1	99	81.530	ENSCCAG00000023031	RBFOX1	97	81.266	Cebus_capucinus
ENSTRUG00000020940	rbfox1	99	81.003	ENSCATG00000033816	RBFOX1	97	80.739	Cercocebus_atys
ENSTRUG00000020940	rbfox1	100	75.550	ENSCLAG00000012761	RBFOX1	98	75.550	Chinchilla_lanigera
ENSTRUG00000020940	rbfox1	90	70.857	ENSCSAG00000008739	RBFOX1	89	71.225	Chlorocebus_sabaeus
ENSTRUG00000020940	rbfox1	83	72.936	ENSCHOG00000012843	RBFOX1	64	90.769	Choloepus_hoffmanni
ENSTRUG00000020940	rbfox1	99	82.105	ENSCPBG00000026626	RBFOX1	98	75.061	Chrysemys_picta_bellii
ENSTRUG00000020940	rbfox1	99	81.003	ENSCANG00000033125	RBFOX1	97	80.739	Colobus_angolensis_palliatus
ENSTRUG00000020940	rbfox1	99	74.877	ENSCGRG00001013729	Rbfox1	98	74.877	Cricetulus_griseus_chok1gshd
ENSTRUG00000020940	rbfox1	99	74.877	ENSCGRG00000003272	Rbfox1	98	74.877	Cricetulus_griseus_crigri
ENSTRUG00000020940	rbfox1	96	83.243	ENSCSEG00000008840	rbfox1	100	82.162	Cynoglossus_semilaevis
ENSTRUG00000020940	rbfox1	100	82.723	ENSDARG00000014746	rbfox1	99	81.937	Danio_rerio
ENSTRUG00000020940	rbfox1	99	75.862	ENSDNOG00000043612	RBFOX1	94	75.862	Dasypus_novemcinctus
ENSTRUG00000020940	rbfox1	100	74.817	ENSDORG00000010024	Rbfox1	98	75.061	Dipodomys_ordii
ENSTRUG00000020940	rbfox1	99	63.547	ENSETEG00000003771	RBFOX1	93	63.547	Echinops_telfairi
ENSTRUG00000020940	rbfox1	99	75.490	ENSEASG00005011599	RBFOX1	98	74.146	Equus_asinus_asinus
ENSTRUG00000020940	rbfox1	99	74.680	ENSECAG00000012667	RBFOX1	91	73.604	Equus_caballus
ENSTRUG00000020940	rbfox1	56	75.117	ENSELUG00000013096	rbfox1	66	74.648	Esox_lucius
ENSTRUG00000020940	rbfox1	99	80.840	ENSFCAG00000025322	RBFOX1	89	81.102	Felis_catus
ENSTRUG00000020940	rbfox1	88	72.595	ENSFALG00000004027	RBFOX1	98	72.886	Ficedula_albicollis
ENSTRUG00000020940	rbfox1	99	75.616	ENSFDAG00000007388	RBFOX1	98	75.616	Fukomys_damarensis
ENSTRUG00000020940	rbfox1	99	73.645	ENSGALG00000034325	RBFOX1	93	73.892	Gallus_gallus
ENSTRUG00000020940	rbfox1	99	80.475	ENSGAGG00000023681	RBFOX1	100	77.296	Gopherus_agassizii
ENSTRUG00000020940	rbfox1	99	81.003	ENSGGOG00000016871	-	97	80.739	Gorilla_gorilla
ENSTRUG00000020940	rbfox1	100	75.795	ENSHGLG00000016944	RBFOX1	98	75.795	Heterocephalus_glaber_female
ENSTRUG00000020940	rbfox1	100	75.795	ENSHGLG00100003272	RBFOX1	98	75.795	Heterocephalus_glaber_male
ENSTRUG00000020940	rbfox1	92	82.036	ENSHCOG00000016419	rbfox1	92	81.845	Hippocampus_comes
ENSTRUG00000020940	rbfox1	96	83.014	ENSIPUG00000015215	rbfox1	100	83.288	Ictalurus_punctatus
ENSTRUG00000020940	rbfox1	99	75.862	ENSSTOG00000000322	RBFOX1	98	75.862	Ictidomys_tridecemlineatus
ENSTRUG00000020940	rbfox1	99	75.369	ENSJJAG00000002575	Rbfox1	98	74.877	Jaculus_jaculus
ENSTRUG00000020940	rbfox1	97	90.296	ENSLBEG00000014659	rbfox1	98	91.057	Labrus_bergylta
ENSTRUG00000020940	rbfox1	99	75.980	ENSLOCG00000006675	rbfox1	98	76.225	Lepisosteus_oculatus
ENSTRUG00000020940	rbfox1	74	81.877	ENSLAFG00000011480	RBFOX1	100	82.258	Loxodonta_africana
ENSTRUG00000020940	rbfox1	99	81.003	ENSMFAG00000036447	RBFOX1	97	80.739	Macaca_fascicularis
ENSTRUG00000020940	rbfox1	99	81.003	ENSMMUG00000003458	RBFOX1	97	80.739	Macaca_mulatta
ENSTRUG00000020940	rbfox1	99	73.219	ENSMNEG00000032034	RBFOX1	93	73.464	Macaca_nemestrina
ENSTRUG00000020940	rbfox1	99	81.003	ENSMLEG00000015382	RBFOX1	97	80.739	Mandrillus_leucophaeus
ENSTRUG00000020940	rbfox1	96	87.945	ENSMAMG00000003142	rbfox1	100	89.041	Mastacembelus_armatus
ENSTRUG00000020940	rbfox1	76	70.234	ENSMGAG00000008606	RBFOX1	96	70.169	Meleagris_gallopavo
ENSTRUG00000020940	rbfox1	97	43.264	ENSMAUG00000020570	Rbfox1	95	43.003	Mesocricetus_auratus
ENSTRUG00000020940	rbfox1	99	80.739	ENSMICG00000034286	RBFOX1	97	80.475	Microcebus_murinus
ENSTRUG00000020940	rbfox1	99	75.123	ENSMOCG00000020932	Rbfox1	99	75.689	Microtus_ochrogaster
ENSTRUG00000020940	rbfox1	91	84.356	ENSMMOG00000009716	rbfox1	86	82.154	Mola_mola
ENSTRUG00000020940	rbfox1	86	72.836	ENSMODG00000005826	RBFOX1	90	73.134	Monodelphis_domestica
ENSTRUG00000020940	rbfox1	99	89.683	ENSMALG00000003337	rbfox1	98	89.947	Monopterus_albus
ENSTRUG00000020940	rbfox1	99	75.123	MGP_CAROLIEiJ_G0020427	Rbfox1	98	75.123	Mus_caroli
ENSTRUG00000020940	rbfox1	100	74.817	ENSMUSG00000008658	Rbfox1	99	86.364	Mus_musculus
ENSTRUG00000020940	rbfox1	99	75.123	MGP_PahariEiJ_G0016135	Rbfox1	98	75.123	Mus_pahari
ENSTRUG00000020940	rbfox1	99	75.123	MGP_SPRETEiJ_G0021321	Rbfox1	98	75.123	Mus_spretus
ENSTRUG00000020940	rbfox1	90	70.857	ENSMPUG00000014822	RBFOX1	85	71.143	Mustela_putorius_furo
ENSTRUG00000020940	rbfox1	74	82.143	ENSMLUG00000015896	RBFOX1	100	82.524	Myotis_lucifugus
ENSTRUG00000020940	rbfox1	100	74.817	ENSNGAG00000023276	Rbfox1	100	75.556	Nannospalax_galili
ENSTRUG00000020940	rbfox1	100	67.734	ENSNBRG00000011084	rbfox1	94	68.734	Neolamprologus_brichardi
ENSTRUG00000020940	rbfox1	99	80.739	ENSNLEG00000010017	-	97	80.475	Nomascus_leucogenys
ENSTRUG00000020940	rbfox1	78	93.846	ENSMEUG00000012525	RBFOX1	67	93.846	Notamacropus_eugenii
ENSTRUG00000020940	rbfox1	88	74.249	ENSOPRG00000006199	-	76	74.249	Ochotona_princeps
ENSTRUG00000020940	rbfox1	99	75.616	ENSODEG00000013166	RBFOX1	98	75.616	Octodon_degus
ENSTRUG00000020940	rbfox1	90	71.060	ENSOANG00000002379	RBFOX1	89	71.429	Ornithorhynchus_anatinus
ENSTRUG00000020940	rbfox1	65	75.214	ENSOCUG00000001205	-	96	75.214	Oryctolagus_cuniculus
ENSTRUG00000020940	rbfox1	99	75.123	ENSOGAG00000025535	RBFOX1	98	75.123	Otolemur_garnettii
ENSTRUG00000020940	rbfox1	65	64.530	ENSOARG00000005135	RBFOX1	85	64.530	Ovis_aries
ENSTRUG00000020940	rbfox1	99	80.952	ENSPPAG00000036238	-	100	80.952	Pan_paniscus
ENSTRUG00000020940	rbfox1	99	81.530	ENSPPRG00000006546	RBFOX1	97	81.530	Panthera_pardus
ENSTRUG00000020940	rbfox1	100	69.565	ENSPTIG00000021154	RBFOX1	100	69.072	Panthera_tigris_altaica
ENSTRUG00000020940	rbfox1	99	81.003	ENSPTRG00000007744	RBFOX1	97	80.739	Pan_troglodytes
ENSTRUG00000020940	rbfox1	99	81.003	ENSPANG00000026500	RBFOX1	97	80.739	Papio_anubis
ENSTRUG00000020940	rbfox1	79	78.521	ENSPKIG00000019353	rbfox1	87	78.169	Paramormyrops_kingsleyae
ENSTRUG00000020940	rbfox1	99	81.217	ENSPKIG00000009667	-	95	81.921	Paramormyrops_kingsleyae
ENSTRUG00000020940	rbfox1	100	76.961	ENSPSIG00000006523	RBFOX1	98	76.961	Pelodiscus_sinensis
ENSTRUG00000020940	rbfox1	99	75.123	ENSPEMG00000017607	Rbfox1	98	75.123	Peromyscus_maniculatus_bairdii
ENSTRUG00000020940	rbfox1	69	78.621	ENSPCIG00000026887	RBFOX1	100	78.966	Phascolarctos_cinereus
ENSTRUG00000020940	rbfox1	90	70.857	ENSPPYG00000007079	-	85	71.143	Pongo_abelii
ENSTRUG00000020940	rbfox1	95	65.854	ENSPCAG00000002630	RBFOX1	93	65.940	Procavia_capensis
ENSTRUG00000020940	rbfox1	99	81.003	ENSPCOG00000025687	RBFOX1	97	80.739	Propithecus_coquereli
ENSTRUG00000020940	rbfox1	99	70.270	ENSPVAG00000013467	RBFOX1	93	70.516	Pteropus_vampyrus
ENSTRUG00000020940	rbfox1	96	79.948	ENSPNAG00000023109	rbfox1	100	79.948	Pygocentrus_nattereri
ENSTRUG00000020940	rbfox1	99	74.755	ENSRNOG00000002827	Rbfox1	94	74.755	Rattus_norvegicus
ENSTRUG00000020940	rbfox1	99	80.952	ENSRBIG00000044478	RBFOX1	100	80.952	Rhinopithecus_bieti
ENSTRUG00000020940	rbfox1	99	81.003	ENSRROG00000044411	RBFOX1	97	80.739	Rhinopithecus_roxellana
ENSTRUG00000020940	rbfox1	99	81.530	ENSSBOG00000033726	RBFOX1	97	81.530	Saimiri_boliviensis_boliviensis
ENSTRUG00000020940	rbfox1	99	76.790	ENSSHAG00000009257	RBFOX1	98	76.790	Sarcophilus_harrisii
ENSTRUG00000020940	rbfox1	98	70.455	ENSSFOG00015009955	-	87	70.739	Scleropages_formosus
ENSTRUG00000020940	rbfox1	100	69.211	ENSSFOG00015023675	rbfox1	98	68.421	Scleropages_formosus
ENSTRUG00000020940	rbfox1	100	91.086	ENSSMAG00000015505	rbfox1	99	90.529	Scophthalmus_maximus
ENSTRUG00000020940	rbfox1	100	86.945	ENSSDUG00000016413	rbfox1	98	87.206	Seriola_dumerili
ENSTRUG00000020940	rbfox1	85	90.492	ENSSLDG00000009353	rbfox1	95	90.365	Seriola_lalandi_dorsalis
ENSTRUG00000020940	rbfox1	91	75.684	ENSSPUG00000009732	RBFOX1	87	76.220	Sphenodon_punctatus
ENSTRUG00000020940	rbfox1	99	92.348	ENSSPAG00000009723	rbfox1	100	92.084	Stegastes_partitus
ENSTRUG00000020940	rbfox1	96	74.809	ENSSSCG00000007917	RBFOX1	91	74.809	Sus_scrofa
ENSTRUG00000020940	rbfox1	99	76.790	ENSTGUG00000004562	RBFOX1	100	76.790	Taeniopygia_guttata
ENSTRUG00000020940	rbfox1	67	70.280	ENSTNIG00000002567	rbfox1	100	72.727	Tetraodon_nigroviridis
ENSTRUG00000020940	rbfox1	62	88.971	ENSTBEG00000009169	-	56	89.781	Tupaia_belangeri
ENSTRUG00000020940	rbfox1	99	73.464	ENSTTRG00000005700	RBFOX1	93	73.710	Tursiops_truncatus
ENSTRUG00000020940	rbfox1	96	72.267	ENSUAMG00000024633	RBFOX1	100	73.067	Ursus_americanus
ENSTRUG00000020940	rbfox1	98	68.158	ENSUMAG00000003579	RBFOX1	98	68.000	Ursus_maritimus
ENSTRUG00000020940	rbfox1	74	78.964	ENSVPAG00000001284	RBFOX1	74	79.677	Vicugna_pacos
ENSTRUG00000020940	rbfox1	99	80.840	ENSVVUG00000017311	RBFOX1	89	81.102	Vulpes_vulpes