EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000021069 (Gene tree)
Gene ID: 101069332
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 6212 bases
Position: chrHE591753.1:277638-283849
Accession: 101069332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000053780	HVSL	PF09749.9	3.3e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000057741	-	4978	XM_003977755	ENSTRUP00000053780	269 (aa)	XP_003977804	UPI0005D19255

Gene Model

Click here to download ENSTRUG00000021069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000021069's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000021069	usb1	86	50.215	ENSG00000103005	USB1	100	51.869	Homo_sapiens
ENSTRUG00000021069	usb1	99	66.667	ENSAPOG00000011942	usb1	99	66.667	Acanthochromis_polyacanthus
ENSTRUG00000021069	usb1	99	48.134	ENSAMEG00000017205	USB1	98	48.134	Ailuropoda_melanoleuca
ENSTRUG00000021069	usb1	83	76.233	ENSACIG00000012234	usb1	99	69.004	Amphilophus_citrinellus
ENSTRUG00000021069	usb1	100	67.730	ENSAOCG00000014831	usb1	100	68.085	Amphiprion_ocellaris
ENSTRUG00000021069	usb1	100	67.376	ENSAPEG00000000296	usb1	100	67.730	Amphiprion_percula
ENSTRUG00000021069	usb1	100	66.192	ENSATEG00000009348	usb1	100	69.395	Anabas_testudineus
ENSTRUG00000021069	usb1	83	53.982	ENSAPLG00000002756	USB1	100	53.982	Anas_platyrhynchos
ENSTRUG00000021069	usb1	84	49.345	ENSACAG00000015481	USB1	100	49.345	Anolis_carolinensis
ENSTRUG00000021069	usb1	86	49.351	ENSANAG00000035640	USB1	98	47.015	Aotus_nancymaae
ENSTRUG00000021069	usb1	92	72.984	ENSACLG00000020586	usb1	99	68.929	Astatotilapia_calliptera
ENSTRUG00000021069	usb1	83	62.054	ENSAMXG00000040146	usb1	95	53.819	Astyanax_mexicanus
ENSTRUG00000021069	usb1	99	47.761	ENSBTAG00000015758	USB1	98	47.761	Bos_taurus
ENSTRUG00000021069	usb1	86	50.649	ENSCJAG00000011733	USB1	98	48.134	Callithrix_jacchus
ENSTRUG00000021069	usb1	99	45.693	ENSCAFG00000008556	USB1	71	45.421	Canis_familiaris
ENSTRUG00000021069	usb1	99	46.442	ENSCAFG00020009263	USB1	98	46.442	Canis_lupus_dingo
ENSTRUG00000021069	usb1	99	47.388	ENSCHIG00000024290	USB1	98	47.388	Capra_hircus
ENSTRUG00000021069	usb1	89	47.561	ENSTSYG00000006997	USB1	98	47.015	Carlito_syrichta
ENSTRUG00000021069	usb1	86	38.961	ENSCAPG00000009057	USB1	99	38.961	Cavia_aperea
ENSTRUG00000021069	usb1	99	47.212	ENSCPOG00000014325	USB1	98	47.212	Cavia_porcellus
ENSTRUG00000021069	usb1	86	50.216	ENSCCAG00000022132	USB1	98	47.761	Cebus_capucinus
ENSTRUG00000021069	usb1	86	50.215	ENSCATG00000032174	USB1	98	48.507	Cercocebus_atys
ENSTRUG00000021069	usb1	65	49.432	ENSCLAG00000007363	USB1	100	49.432	Chinchilla_lanigera
ENSTRUG00000021069	usb1	86	49.785	ENSCSAG00000004783	USB1	98	48.507	Chlorocebus_sabaeus
ENSTRUG00000021069	usb1	86	51.293	ENSCPBG00000026943	USB1	98	49.275	Chrysemys_picta_bellii
ENSTRUG00000021069	usb1	83	31.915	ENSCING00000011490	-	97	30.216	Ciona_intestinalis
ENSTRUG00000021069	usb1	84	31.197	ENSCSAVG00000000894	-	89	30.677	Ciona_savignyi
ENSTRUG00000021069	usb1	92	47.984	ENSCANG00000037135	USB1	98	47.191	Colobus_angolensis_palliatus
ENSTRUG00000021069	usb1	99	46.715	ENSCGRG00001011243	USB1	98	46.715	Cricetulus_griseus_chok1gshd
ENSTRUG00000021069	usb1	99	46.715	ENSCGRG00000013252	USB1	98	46.715	Cricetulus_griseus_crigri
ENSTRUG00000021069	usb1	100	64.260	ENSCSEG00000013881	usb1	99	64.260	Cynoglossus_semilaevis
ENSTRUG00000021069	usb1	83	69.737	ENSCVAG00000009252	usb1	98	69.737	Cyprinodon_variegatus
ENSTRUG00000021069	usb1	90	58.436	ENSDARG00000003841	usb1	100	55.396	Danio_rerio
ENSTRUG00000021069	usb1	99	47.761	ENSDORG00000001888	Usb1	98	48.134	Dipodomys_ordii
ENSTRUG00000021069	usb1	90	35.060	FBgn0037713	CG16790	95	35.178	Drosophila_melanogaster
ENSTRUG00000021069	usb1	99	41.264	ENSETEG00000019682	USB1	98	41.264	Echinops_telfairi
ENSTRUG00000021069	usb1	84	44.248	ENSEBUG00000005889	usb1	99	37.821	Eptatretus_burgeri
ENSTRUG00000021069	usb1	99	48.134	ENSEASG00005005484	USB1	98	48.134	Equus_asinus_asinus
ENSTRUG00000021069	usb1	99	47.761	ENSECAG00000019493	USB1	90	47.761	Equus_caballus
ENSTRUG00000021069	usb1	65	45.455	ENSEEUG00000000154	USB1	66	45.455	Erinaceus_europaeus
ENSTRUG00000021069	usb1	92	63.200	ENSELUG00000010974	usb1	100	62.409	Esox_lucius
ENSTRUG00000021069	usb1	87	48.718	ENSFCAG00000002693	USB1	98	47.761	Felis_catus
ENSTRUG00000021069	usb1	84	54.148	ENSFALG00000006876	USB1	98	51.282	Ficedula_albicollis
ENSTRUG00000021069	usb1	99	46.269	ENSFDAG00000010052	USB1	98	46.269	Fukomys_damarensis
ENSTRUG00000021069	usb1	87	64.876	ENSFHEG00000012334	usb1	97	66.116	Fundulus_heteroclitus
ENSTRUG00000021069	usb1	83	70.721	ENSGMOG00000004228	usb1	99	70.721	Gadus_morhua
ENSTRUG00000021069	usb1	83	52.679	ENSGALG00000035604	USB1	98	49.442	Gallus_gallus
ENSTRUG00000021069	usb1	99	67.273	ENSGAFG00000021890	usb1	99	67.273	Gambusia_affinis
ENSTRUG00000021069	usb1	100	68.953	ENSGACG00000003257	usb1	100	68.953	Gasterosteus_aculeatus
ENSTRUG00000021069	usb1	99	50.000	ENSGAGG00000022572	USB1	98	50.000	Gopherus_agassizii
ENSTRUG00000021069	usb1	86	50.644	ENSGGOG00000017147	USB1	98	49.254	Gorilla_gorilla
ENSTRUG00000021069	usb1	92	72.581	ENSHBUG00000009823	usb1	99	68.459	Haplochromis_burtoni
ENSTRUG00000021069	usb1	99	47.584	ENSHGLG00000016078	USB1	96	47.584	Heterocephalus_glaber_female
ENSTRUG00000021069	usb1	99	47.584	ENSHGLG00100005562	USB1	96	47.584	Heterocephalus_glaber_male
ENSTRUG00000021069	usb1	81	71.429	ENSHCOG00000015633	usb1	99	66.045	Hippocampus_comes
ENSTRUG00000021069	usb1	99	54.167	ENSIPUG00000008601	usb1	100	53.819	Ictalurus_punctatus
ENSTRUG00000021069	usb1	99	47.015	ENSSTOG00000007548	USB1	98	47.080	Ictidomys_tridecemlineatus
ENSTRUG00000021069	usb1	99	49.442	ENSJJAG00000021859	Usb1	98	49.442	Jaculus_jaculus
ENSTRUG00000021069	usb1	88	72.574	ENSKMAG00000007200	usb1	99	67.143	Kryptolebias_marmoratus
ENSTRUG00000021069	usb1	91	66.667	ENSLBEG00000008452	usb1	84	66.412	Labrus_bergylta
ENSTRUG00000021069	usb1	84	52.814	ENSLACG00000000105	USB1	86	52.419	Latimeria_chalumnae
ENSTRUG00000021069	usb1	99	50.355	ENSLOCG00000000465	usb1	100	50.355	Lepisosteus_oculatus
ENSTRUG00000021069	usb1	99	42.029	ENSLAFG00000002267	USB1	98	42.029	Loxodonta_africana
ENSTRUG00000021069	usb1	86	50.215	ENSMFAG00000003926	USB1	98	48.507	Macaca_fascicularis
ENSTRUG00000021069	usb1	86	50.215	ENSMMUG00000022669	USB1	98	48.507	Macaca_mulatta
ENSTRUG00000021069	usb1	86	49.785	ENSMNEG00000042487	USB1	98	48.134	Macaca_nemestrina
ENSTRUG00000021069	usb1	86	50.215	ENSMLEG00000028756	USB1	98	48.507	Mandrillus_leucophaeus
ENSTRUG00000021069	usb1	100	67.266	ENSMAMG00000015092	usb1	100	67.266	Mastacembelus_armatus
ENSTRUG00000021069	usb1	92	72.984	ENSMZEG00005010008	usb1	99	68.817	Maylandia_zebra
ENSTRUG00000021069	usb1	99	46.840	ENSMAUG00000007832	Usb1	98	46.840	Mesocricetus_auratus
ENSTRUG00000021069	usb1	86	50.649	ENSMICG00000004900	USB1	98	49.071	Microcebus_murinus
ENSTRUG00000021069	usb1	99	48.327	ENSMOCG00000022647	Usb1	98	48.327	Microtus_ochrogaster
ENSTRUG00000021069	usb1	84	76.106	ENSMMOG00000000490	usb1	100	68.773	Mola_mola
ENSTRUG00000021069	usb1	99	46.886	ENSMODG00000014067	USB1	99	47.037	Monodelphis_domestica
ENSTRUG00000021069	usb1	91	72.470	ENSMALG00000005930	usb1	99	67.616	Monopterus_albus
ENSTRUG00000021069	usb1	99	48.327	MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	Mus_caroli
ENSTRUG00000021069	usb1	99	48.327	ENSMUSG00000031792	Usb1	99	48.214	Mus_musculus
ENSTRUG00000021069	usb1	99	48.699	MGP_PahariEiJ_G0023019	Usb1	100	48.718	Mus_pahari
ENSTRUG00000021069	usb1	99	48.327	MGP_SPRETEiJ_G0032540	Usb1	98	48.327	Mus_spretus
ENSTRUG00000021069	usb1	99	47.584	ENSMPUG00000004684	USB1	94	47.584	Mustela_putorius_furo
ENSTRUG00000021069	usb1	86	51.948	ENSMLUG00000007400	USB1	100	51.948	Myotis_lucifugus
ENSTRUG00000021069	usb1	99	47.445	ENSNGAG00000009703	Usb1	98	49.071	Nannospalax_galili
ENSTRUG00000021069	usb1	92	66.400	ENSNBRG00000008747	usb1	99	70.892	Neolamprologus_brichardi
ENSTRUG00000021069	usb1	79	51.643	ENSNLEG00000003340	USB1	98	48.617	Nomascus_leucogenys
ENSTRUG00000021069	usb1	99	49.071	ENSODEG00000016214	USB1	98	49.071	Octodon_degus
ENSTRUG00000021069	usb1	99	69.065	ENSONIG00000011063	usb1	100	69.065	Oreochromis_niloticus
ENSTRUG00000021069	usb1	83	52.889	ENSOANG00000012118	USB1	94	52.889	Ornithorhynchus_anatinus
ENSTRUG00000021069	usb1	91	71.951	ENSORLG00000012479	usb1	99	69.373	Oryzias_latipes
ENSTRUG00000021069	usb1	91	71.138	ENSORLG00020018671	usb1	99	68.889	Oryzias_latipes_hni
ENSTRUG00000021069	usb1	91	72.358	ENSORLG00015009679	usb1	99	70.260	Oryzias_latipes_hsok
ENSTRUG00000021069	usb1	91	72.541	ENSOMEG00000012930	usb1	99	69.091	Oryzias_melastigma
ENSTRUG00000021069	usb1	89	45.528	ENSOGAG00000003273	USB1	98	44.981	Otolemur_garnettii
ENSTRUG00000021069	usb1	88	48.954	ENSOARG00000001107	USB1	92	48.954	Ovis_aries
ENSTRUG00000021069	usb1	86	50.215	ENSPPAG00000042137	USB1	98	48.881	Pan_paniscus
ENSTRUG00000021069	usb1	89	47.347	ENSPPRG00000024797	USB1	98	46.691	Panthera_pardus
ENSTRUG00000021069	usb1	87	47.863	ENSPTIG00000007506	USB1	98	47.015	Panthera_tigris_altaica
ENSTRUG00000021069	usb1	84	48.246	ENSPTRG00000008172	USB1	100	52.336	Pan_troglodytes
ENSTRUG00000021069	usb1	86	50.215	ENSPANG00000025138	USB1	98	48.507	Papio_anubis
ENSTRUG00000021069	usb1	99	51.667	ENSPKIG00000015109	usb1	99	53.000	Paramormyrops_kingsleyae
ENSTRUG00000021069	usb1	83	42.105	ENSPSIG00000004305	USB1	100	42.105	Pelodiscus_sinensis
ENSTRUG00000021069	usb1	83	69.643	ENSPMGG00000017725	usb1	99	62.825	Periophthalmus_magnuspinnatus
ENSTRUG00000021069	usb1	99	46.715	ENSPEMG00000016183	Usb1	98	46.715	Peromyscus_maniculatus_bairdii
ENSTRUG00000021069	usb1	83	49.115	ENSPMAG00000000462	usb1	95	49.115	Petromyzon_marinus
ENSTRUG00000021069	usb1	99	68.116	ENSPFOG00000011130	usb1	99	68.116	Poecilia_formosa
ENSTRUG00000021069	usb1	99	68.116	ENSPLAG00000009820	usb1	99	68.116	Poecilia_latipinna
ENSTRUG00000021069	usb1	99	68.478	ENSPMEG00000006402	usb1	99	68.478	Poecilia_mexicana
ENSTRUG00000021069	usb1	87	67.355	ENSPREG00000001047	usb1	98	68.595	Poecilia_reticulata
ENSTRUG00000021069	usb1	81	49.091	ENSPPYG00000007401	USB1	98	47.843	Pongo_abelii
ENSTRUG00000021069	usb1	86	49.356	ENSPCOG00000022612	USB1	98	48.699	Propithecus_coquereli
ENSTRUG00000021069	usb1	99	46.642	ENSPVAG00000004613	USB1	98	46.642	Pteropus_vampyrus
ENSTRUG00000021069	usb1	92	72.984	ENSPNYG00000022262	usb1	99	69.176	Pundamilia_nyererei
ENSTRUG00000021069	usb1	93	59.127	ENSPNAG00000011736	usb1	100	54.730	Pygocentrus_nattereri
ENSTRUG00000021069	usb1	99	47.955	ENSRNOG00000013216	Usb1	98	47.955	Rattus_norvegicus
ENSTRUG00000021069	usb1	92	46.371	ENSRBIG00000044466	USB1	100	51.869	Rhinopithecus_bieti
ENSTRUG00000021069	usb1	92	48.790	ENSRROG00000029211	USB1	98	48.134	Rhinopithecus_roxellana
ENSTRUG00000021069	usb1	86	50.649	ENSSBOG00000029362	USB1	98	48.134	Saimiri_boliviensis_boliviensis
ENSTRUG00000021069	usb1	81	48.165	ENSSHAG00000006993	USB1	94	47.083	Sarcophilus_harrisii
ENSTRUG00000021069	usb1	93	60.241	ENSSFOG00015023663	usb1	91	57.388	Scleropages_formosus
ENSTRUG00000021069	usb1	99	65.646	ENSSMAG00000015834	usb1	99	65.646	Scophthalmus_maximus
ENSTRUG00000021069	usb1	83	77.578	ENSSDUG00000002949	usb1	99	69.030	Seriola_dumerili
ENSTRUG00000021069	usb1	91	74.180	ENSSLDG00000014174	usb1	99	70.251	Seriola_lalandi_dorsalis
ENSTRUG00000021069	usb1	79	50.935	ENSSPUG00000006741	USB1	100	50.935	Sphenodon_punctatus
ENSTRUG00000021069	usb1	100	65.278	ENSSPAG00000007484	usb1	100	66.549	Stegastes_partitus
ENSTRUG00000021069	usb1	99	47.955	ENSSSCG00000002807	USB1	98	47.955	Sus_scrofa
ENSTRUG00000021069	usb1	78	55.660	ENSTGUG00000004792	USB1	98	50.373	Taeniopygia_guttata
ENSTRUG00000021069	usb1	100	65.428	ENSTNIG00000000626	usb1	98	65.428	Tetraodon_nigroviridis
ENSTRUG00000021069	usb1	83	34.821	ENSTBEG00000001507	USB1	97	34.821	Tupaia_belangeri
ENSTRUG00000021069	usb1	99	47.970	ENSUAMG00000016823	USB1	98	48.327	Ursus_americanus
ENSTRUG00000021069	usb1	79	51.402	ENSUMAG00000021369	USB1	100	51.402	Ursus_maritimus
ENSTRUG00000021069	usb1	99	46.642	ENSVVUG00000023700	USB1	95	46.559	Vulpes_vulpes
ENSTRUG00000021069	usb1	80	54.839	ENSXETG00000013795	usb1	89	54.709	Xenopus_tropicalis
ENSTRUG00000021069	usb1	93	69.020	ENSXMAG00000024687	usb1	80	68.313	Xiphophorus_maculatus