EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000021651 (Gene tree)
Gene ID: 101070942
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 6037 bases
Position: chrHE591928.1:91764-97800
Accession: 101070942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000055830	zf-U1	PF06220.12	9.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000056222	-	2111	XM_011617225	ENSTRUP00000055830	147 (aa)	XP_011615527	UPI00002DA5A0

Gene Model

Click here to download ENSTRUG00000021651's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000021651's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000021651	snrpc	100	97.297	ENSAPOG00000013907	snrpc	100	97.297	Acanthochromis_polyacanthus
ENSTRUG00000021651	snrpc	100	97.297	ENSAOCG00000021151	snrpc	100	97.297	Amphiprion_ocellaris
ENSTRUG00000021651	snrpc	100	97.297	ENSAPEG00000023221	snrpc	100	97.297	Amphiprion_percula
ENSTRUG00000021651	snrpc	100	97.297	ENSATEG00000025133	snrpc	100	97.297	Anabas_testudineus
ENSTRUG00000021651	snrpc	100	62.893	ENSANAG00000021026	-	100	60.000	Aotus_nancymaae
ENSTRUG00000021651	snrpc	100	65.854	ENSANAG00000019157	-	100	65.409	Aotus_nancymaae
ENSTRUG00000021651	snrpc	100	69.333	ENSANAG00000019726	-	92	70.000	Aotus_nancymaae
ENSTRUG00000021651	snrpc	100	66.038	ENSANAG00000007843	-	100	69.182	Aotus_nancymaae
ENSTRUG00000021651	snrpc	99	64.815	ENSANAG00000020588	-	92	63.291	Aotus_nancymaae
ENSTRUG00000021651	snrpc	57	98.810	ENSACLG00000000843	snrpc	100	79.195	Astatotilapia_calliptera
ENSTRUG00000021651	snrpc	100	75.000	ENSAMXG00000032641	snrpc	100	61.486	Astyanax_mexicanus
ENSTRUG00000021651	snrpc	100	64.780	ENSCJAG00000043055	-	100	67.925	Callithrix_jacchus
ENSTRUG00000021651	snrpc	100	57.233	ENSCAFG00000025525	-	100	57.233	Canis_familiaris
ENSTRUG00000021651	snrpc	100	68.421	ENSCHIG00000005039	-	100	64.474	Capra_hircus
ENSTRUG00000021651	snrpc	100	61.745	ENSTSYG00000025721	-	100	55.034	Carlito_syrichta
ENSTRUG00000021651	snrpc	98	63.125	ENSCCAG00000022751	-	95	62.179	Cebus_capucinus
ENSTRUG00000021651	snrpc	100	63.265	ENSCCAG00000028293	-	100	58.503	Cebus_capucinus
ENSTRUG00000021651	snrpc	98	46.875	ENSCCAG00000022209	-	95	50.000	Cebus_capucinus
ENSTRUG00000021651	snrpc	51	66.667	ENSCGRG00001021483	-	100	58.503	Cricetulus_griseus_chok1gshd
ENSTRUG00000021651	snrpc	100	94.631	ENSCSEG00000016845	snrpc	100	94.631	Cynoglossus_semilaevis
ENSTRUG00000021651	snrpc	100	86.395	ENSCVAG00000014297	snrpc	100	86.395	Cyprinodon_variegatus
ENSTRUG00000021651	snrpc	100	72.500	ENSDARG00000009871	snrpc	100	71.698	Danio_rerio
ENSTRUG00000021651	snrpc	95	68.531	ENSDORG00000029823	-	88	69.919	Dipodomys_ordii
ENSTRUG00000021651	snrpc	73	97.248	ENSFHEG00000016667	snrpc	97	97.248	Fundulus_heteroclitus
ENSTRUG00000021651	snrpc	99	91.034	ENSGMOG00000000090	snrpc	100	91.034	Gadus_morhua
ENSTRUG00000021651	snrpc	100	86.395	ENSGAFG00000016115	snrpc	100	86.395	Gambusia_affinis
ENSTRUG00000021651	snrpc	99	96.575	ENSGACG00000004899	snrpc	98	96.575	Gasterosteus_aculeatus
ENSTRUG00000021651	snrpc	57	98.810	ENSHBUG00000011637	snrpc	100	79.195	Haplochromis_burtoni
ENSTRUG00000021651	snrpc	69	67.568	ENSHGLG00000005871	-	100	61.486	Heterocephalus_glaber_female
ENSTRUG00000021651	snrpc	100	70.440	ENSHGLG00100017764	-	100	66.038	Heterocephalus_glaber_male
ENSTRUG00000021651	snrpc	100	90.476	ENSHCOG00000001596	snrpc	100	90.476	Hippocampus_comes
ENSTRUG00000021651	snrpc	100	76.250	ENSIPUG00000024851	snrpc	100	70.440	Ictalurus_punctatus
ENSTRUG00000021651	snrpc	100	91.216	ENSKMAG00000016356	snrpc	100	83.108	Kryptolebias_marmoratus
ENSTRUG00000021651	snrpc	100	96.644	ENSLBEG00000023881	snrpc	100	96.644	Labrus_bergylta
ENSTRUG00000021651	snrpc	100	68.667	ENSMMUG00000039415	-	100	69.333	Macaca_mulatta
ENSTRUG00000021651	snrpc	97	57.241	ENSMLEG00000039724	-	81	54.861	Mandrillus_leucophaeus
ENSTRUG00000021651	snrpc	100	96.622	ENSMAMG00000003857	snrpc	100	96.622	Mastacembelus_armatus
ENSTRUG00000021651	snrpc	57	98.810	ENSMZEG00005002199	snrpc	100	79.195	Maylandia_zebra
ENSTRUG00000021651	snrpc	100	65.563	ENSMICG00000036552	-	87	60.811	Microcebus_murinus
ENSTRUG00000021651	snrpc	98	95.862	ENSMMOG00000013149	snrpc	100	95.862	Mola_mola
ENSTRUG00000021651	snrpc	52	88.158	ENSMODG00000025263	-	100	64.626	Monodelphis_domestica
ENSTRUG00000021651	snrpc	100	91.837	ENSMALG00000001197	snrpc	100	91.837	Monopterus_albus
ENSTRUG00000021651	snrpc	57	98.810	ENSONIG00000014757	snrpc	100	79.195	Oreochromis_niloticus
ENSTRUG00000021651	snrpc	51	92.000	ENSOCUG00000026430	-	99	67.925	Oryctolagus_cuniculus
ENSTRUG00000021651	snrpc	57	98.810	ENSORLG00000007308	snrpc	97	80.986	Oryzias_latipes
ENSTRUG00000021651	snrpc	57	98.810	ENSORLG00020012607	SNRPC	97	80.420	Oryzias_latipes_hni
ENSTRUG00000021651	snrpc	75	95.495	ENSOMEG00000012014	snrpc	86	88.591	Oryzias_melastigma
ENSTRUG00000021651	snrpc	100	63.415	ENSPKIG00000001671	SNRPC	100	63.522	Paramormyrops_kingsleyae
ENSTRUG00000021651	snrpc	57	85.106	ENSPKIG00000003136	snrpc	100	70.323	Paramormyrops_kingsleyae
ENSTRUG00000021651	snrpc	98	79.861	ENSPMGG00000022162	snrpc	100	84.028	Periophthalmus_magnuspinnatus
ENSTRUG00000021651	snrpc	100	70.701	ENSPEMG00000002763	-	100	71.333	Peromyscus_maniculatus_bairdii
ENSTRUG00000021651	snrpc	100	86.395	ENSPFOG00000015174	snrpc	100	86.395	Poecilia_formosa
ENSTRUG00000021651	snrpc	100	86.395	ENSPLAG00000012311	snrpc	100	86.395	Poecilia_latipinna
ENSTRUG00000021651	snrpc	100	86.395	ENSPMEG00000010274	snrpc	100	86.395	Poecilia_mexicana
ENSTRUG00000021651	snrpc	99	72.603	ENSPREG00000013017	snrpc	79	72.414	Poecilia_reticulata
ENSTRUG00000021651	snrpc	84	73.171	ENSPNYG00000004900	snrpc	100	60.959	Pundamilia_nyererei
ENSTRUG00000021651	snrpc	100	77.987	ENSPNAG00000012799	snrpc	100	69.620	Pygocentrus_nattereri
ENSTRUG00000021651	snrpc	98	66.438	ENSSBOG00000032882	-	93	66.207	Saimiri_boliviensis_boliviensis
ENSTRUG00000021651	snrpc	52	88.158	ENSSHAG00000002972	-	100	64.626	Sarcophilus_harrisii
ENSTRUG00000021651	snrpc	57	80.851	ENSSFOG00015019150	snrpc	100	62.893	Scleropages_formosus
ENSTRUG00000021651	snrpc	56	85.870	ENSSFOG00015022422	snrpc	86	72.388	Scleropages_formosus
ENSTRUG00000021651	snrpc	100	97.297	ENSSMAG00000008029	snrpc	100	97.297	Scophthalmus_maximus
ENSTRUG00000021651	snrpc	100	97.297	ENSSDUG00000018895	snrpc	81	97.297	Seriola_dumerili
ENSTRUG00000021651	snrpc	100	97.297	ENSSLDG00000005034	snrpc	100	97.297	Seriola_lalandi_dorsalis
ENSTRUG00000021651	snrpc	100	97.297	ENSSPAG00000000914	snrpc	100	97.297	Stegastes_partitus
ENSTRUG00000021651	snrpc	100	90.683	ENSTNIG00000018307	snrpc	100	90.683	Tetraodon_nigroviridis
ENSTRUG00000021651	snrpc	97	71.429	ENSVVUG00000010467	-	87	68.590	Vulpes_vulpes
ENSTRUG00000021651	snrpc	98	91.724	ENSXCOG00000015871	-	100	91.724	Xiphophorus_couchianus
ENSTRUG00000021651	snrpc	100	86.395	ENSXMAG00000017935	snrpc	100	86.395	Xiphophorus_maculatus