EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000021737 (Gene tree)
Gene ID: 101078563
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 2362 bases
Position: chr20:10737925-10740286
Accession: 101078563
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000048509	LSM	PF01423.22	9.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000057570	-	1624	XM_011615052	ENSTRUP00000048509	143 (aa)	XP_011613354	UPI0005D1E5A2

Gene Model

Click here to download ENSTRUG00000021737's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03018	RNA degradation	KEGG
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000021737's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000021737	lsm4	68	33.000	ENSTRUG00000002093	si:ch73-14h10.2	100	33.000
ENSTRUG00000021737	lsm4	80	30.702	ENSTRUG00000023976	snrpd3l	86	32.039

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000021737	lsm4	62	96.591	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSTRUG00000021737	lsm4	100	89.404	ENSAPOG00000005643	lsm4	100	89.404	Acanthochromis_polyacanthus
ENSTRUG00000021737	lsm4	61	96.552	ENSAMEG00000011162	LSM4	75	81.301	Ailuropoda_melanoleuca
ENSTRUG00000021737	lsm4	100	91.216	ENSAOCG00000006414	lsm4	100	91.216	Amphiprion_ocellaris
ENSTRUG00000021737	lsm4	100	90.604	ENSAPEG00000006238	lsm4	100	90.604	Amphiprion_percula
ENSTRUG00000021737	lsm4	100	87.500	ENSATEG00000016559	lsm4	100	87.500	Anabas_testudineus
ENSTRUG00000021737	lsm4	62	96.591	ENSANAG00000034659	LSM4	98	78.226	Aotus_nancymaae
ENSTRUG00000021737	lsm4	100	91.156	ENSACLG00000022738	lsm4	100	91.837	Astatotilapia_calliptera
ENSTRUG00000021737	lsm4	100	89.583	ENSAMXG00000016932	lsm4	100	89.583	Astyanax_mexicanus
ENSTRUG00000021737	lsm4	62	96.591	ENSBTAG00000008578	LSM4	79	81.452	Bos_taurus
ENSTRUG00000021737	lsm4	58	74.699	WBGene00003078	lsm-4	83	65.686	Caenorhabditis_elegans
ENSTRUG00000021737	lsm4	62	96.591	ENSCJAG00000014171	LSM4	79	81.452	Callithrix_jacchus
ENSTRUG00000021737	lsm4	62	96.591	ENSCAFG00000014900	LSM4	72	81.452	Canis_familiaris
ENSTRUG00000021737	lsm4	62	96.591	ENSCAFG00020012137	LSM4	79	81.452	Canis_lupus_dingo
ENSTRUG00000021737	lsm4	61	96.552	ENSCHIG00000010928	LSM4	72	81.301	Capra_hircus
ENSTRUG00000021737	lsm4	62	95.455	ENSTSYG00000030906	LSM4	79	80.645	Carlito_syrichta
ENSTRUG00000021737	lsm4	62	95.455	ENSCAPG00000014140	LSM4	79	81.452	Cavia_aperea
ENSTRUG00000021737	lsm4	62	95.455	ENSCPOG00000024117	LSM4	79	81.452	Cavia_porcellus
ENSTRUG00000021737	lsm4	62	96.591	ENSCCAG00000036308	LSM4	79	81.452	Cebus_capucinus
ENSTRUG00000021737	lsm4	62	96.591	ENSCATG00000029311	LSM4	98	78.400	Cercocebus_atys
ENSTRUG00000021737	lsm4	62	96.591	ENSCLAG00000010828	LSM4	93	77.372	Chinchilla_lanigera
ENSTRUG00000021737	lsm4	62	96.591	ENSCSAG00000005370	LSM4	79	81.452	Chlorocebus_sabaeus
ENSTRUG00000021737	lsm4	62	97.727	ENSCPBG00000012925	LSM4	96	86.765	Chrysemys_picta_bellii
ENSTRUG00000021737	lsm4	60	94.186	ENSCING00000007519	-	96	74.046	Ciona_intestinalis
ENSTRUG00000021737	lsm4	60	91.860	ENSCSAVG00000008596	-	98	73.684	Ciona_savignyi
ENSTRUG00000021737	lsm4	62	96.591	ENSCANG00000043686	LSM4	98	78.400	Colobus_angolensis_palliatus
ENSTRUG00000021737	lsm4	62	94.318	ENSCGRG00001014436	Lsm4	79	79.839	Cricetulus_griseus_chok1gshd
ENSTRUG00000021737	lsm4	61	94.253	ENSCGRG00000009398	Lsm4	79	79.675	Cricetulus_griseus_crigri
ENSTRUG00000021737	lsm4	100	91.608	ENSCSEG00000016127	lsm4	100	94.406	Cynoglossus_semilaevis
ENSTRUG00000021737	lsm4	100	93.007	ENSCVAG00000010601	lsm4	100	93.007	Cyprinodon_variegatus
ENSTRUG00000021737	lsm4	90	92.188	ENSCVAG00000021828	lsm4	98	92.188	Cyprinodon_variegatus
ENSTRUG00000021737	lsm4	96	83.333	ENSDARG00000023852	lsm4	99	86.111	Danio_rerio
ENSTRUG00000021737	lsm4	62	96.591	ENSDORG00000024225	Lsm4	99	82.143	Dipodomys_ordii
ENSTRUG00000021737	lsm4	70	82.000	FBgn0032240	CG17768	63	82.474	Drosophila_melanogaster
ENSTRUG00000021737	lsm4	51	94.521	ENSETEG00000007762	-	98	80.800	Echinops_telfairi
ENSTRUG00000021737	lsm4	56	88.750	ENSEBUG00000003639	-	87	66.667	Eptatretus_burgeri
ENSTRUG00000021737	lsm4	93	89.474	ENSELUG00000012821	lsm4	100	89.474	Esox_lucius
ENSTRUG00000021737	lsm4	62	96.591	ENSFCAG00000040580	LSM4	79	81.452	Felis_catus
ENSTRUG00000021737	lsm4	61	97.701	ENSFALG00000009478	LSM4	96	86.667	Ficedula_albicollis
ENSTRUG00000021737	lsm4	61	96.552	ENSFDAG00000010124	LSM4	79	82.927	Fukomys_damarensis
ENSTRUG00000021737	lsm4	99	79.592	ENSGMOG00000007729	lsm4	99	81.081	Gadus_morhua
ENSTRUG00000021737	lsm4	62	97.727	ENSGALG00000003385	LSM4	96	86.765	Gallus_gallus
ENSTRUG00000021737	lsm4	100	94.406	ENSGAFG00000004903	lsm4	97	92.188	Gambusia_affinis
ENSTRUG00000021737	lsm4	100	84.000	ENSGACG00000008140	lsm4	100	86.000	Gasterosteus_aculeatus
ENSTRUG00000021737	lsm4	62	97.727	ENSGAGG00000017812	LSM4	96	86.765	Gopherus_agassizii
ENSTRUG00000021737	lsm4	62	96.591	ENSGGOG00000012914	-	98	78.400	Gorilla_gorilla
ENSTRUG00000021737	lsm4	100	91.781	ENSHBUG00000008858	lsm4	80	92.466	Haplochromis_burtoni
ENSTRUG00000021737	lsm4	97	75.714	ENSHGLG00000006568	LSM4	99	83.571	Heterocephalus_glaber_female
ENSTRUG00000021737	lsm4	64	96.739	ENSHGLG00100007894	LSM4	99	96.739	Heterocephalus_glaber_male
ENSTRUG00000021737	lsm4	100	93.007	ENSHCOG00000008819	lsm4	100	93.007	Hippocampus_comes
ENSTRUG00000021737	lsm4	100	88.194	ENSIPUG00000005368	Lsm4	100	88.194	Ictalurus_punctatus
ENSTRUG00000021737	lsm4	62	96.591	ENSSTOG00000016494	LSM4	79	81.452	Ictidomys_tridecemlineatus
ENSTRUG00000021737	lsm4	62	94.318	ENSJJAG00000017420	Lsm4	79	79.839	Jaculus_jaculus
ENSTRUG00000021737	lsm4	100	90.972	ENSKMAG00000005073	lsm4	100	91.667	Kryptolebias_marmoratus
ENSTRUG00000021737	lsm4	100	90.604	ENSLBEG00000027930	lsm4	100	90.604	Labrus_bergylta
ENSTRUG00000021737	lsm4	62	97.727	ENSLACG00000015861	LSM4	99	85.211	Latimeria_chalumnae
ENSTRUG00000021737	lsm4	89	90.625	ENSLOCG00000002025	lsm4	100	87.500	Lepisosteus_oculatus
ENSTRUG00000021737	lsm4	61	95.402	ENSLAFG00000017459	LSM4	98	83.453	Loxodonta_africana
ENSTRUG00000021737	lsm4	62	96.591	ENSMFAG00000031194	LSM4	98	78.400	Macaca_fascicularis
ENSTRUG00000021737	lsm4	62	96.591	ENSMMUG00000004405	LSM4	79	81.452	Macaca_mulatta
ENSTRUG00000021737	lsm4	62	96.591	ENSMNEG00000042899	LSM4	98	78.400	Macaca_nemestrina
ENSTRUG00000021737	lsm4	62	96.591	ENSMLEG00000027948	LSM4	98	78.400	Mandrillus_leucophaeus
ENSTRUG00000021737	lsm4	100	95.804	ENSMAMG00000006190	lsm4	100	95.804	Mastacembelus_armatus
ENSTRUG00000021737	lsm4	100	91.781	ENSMZEG00005016420	lsm4	100	92.466	Maylandia_zebra
ENSTRUG00000021737	lsm4	94	76.471	ENSMGAG00000004976	LSM4	96	80.882	Meleagris_gallopavo
ENSTRUG00000021737	lsm4	69	93.939	ENSMICG00000000222	LSM4	79	80.645	Microcebus_murinus
ENSTRUG00000021737	lsm4	62	94.318	ENSMOCG00000020861	Lsm4	79	79.839	Microtus_ochrogaster
ENSTRUG00000021737	lsm4	51	97.260	ENSMODG00000015044	-	98	76.800	Monodelphis_domestica
ENSTRUG00000021737	lsm4	100	91.608	ENSMALG00000018159	lsm4	100	91.608	Monopterus_albus
ENSTRUG00000021737	lsm4	62	94.318	MGP_CAROLIEiJ_G0031158	Lsm4	79	79.839	Mus_caroli
ENSTRUG00000021737	lsm4	62	94.318	ENSMUSG00000031848	Lsm4	96	86.869	Mus_musculus
ENSTRUG00000021737	lsm4	62	94.318	MGP_PahariEiJ_G0021623	Lsm4	79	79.839	Mus_pahari
ENSTRUG00000021737	lsm4	62	94.318	MGP_SPRETEiJ_G0032276	Lsm4	79	79.839	Mus_spretus
ENSTRUG00000021737	lsm4	62	96.591	ENSMPUG00000015589	LSM4	79	81.452	Mustela_putorius_furo
ENSTRUG00000021737	lsm4	61	96.552	ENSMLUG00000004010	LSM4	78	81.301	Myotis_lucifugus
ENSTRUG00000021737	lsm4	62	94.318	ENSNGAG00000008644	Lsm4	79	79.839	Nannospalax_galili
ENSTRUG00000021737	lsm4	69	97.959	ENSNBRG00000022150	lsm4	75	75.912	Neolamprologus_brichardi
ENSTRUG00000021737	lsm4	51	93.151	ENSMEUG00000013229	LSM4	77	76.147	Notamacropus_eugenii
ENSTRUG00000021737	lsm4	54	97.403	ENSOPRG00000005575	LSM4	98	78.226	Ochotona_princeps
ENSTRUG00000021737	lsm4	62	96.591	ENSODEG00000020549	-	99	82.857	Octodon_degus
ENSTRUG00000021737	lsm4	97	60.714	ENSODEG00000011712	-	98	60.714	Octodon_degus
ENSTRUG00000021737	lsm4	62	86.364	ENSODEG00000004519	-	80	74.194	Octodon_degus
ENSTRUG00000021737	lsm4	100	91.156	ENSONIG00000012724	lsm4	100	91.837	Oreochromis_niloticus
ENSTRUG00000021737	lsm4	61	92.308	ENSOANG00000007434	LSM4	97	78.740	Ornithorhynchus_anatinus
ENSTRUG00000021737	lsm4	100	92.361	ENSORLG00000008391	lsm4	100	92.361	Oryzias_latipes
ENSTRUG00000021737	lsm4	100	93.056	ENSORLG00020014829	lsm4	100	93.056	Oryzias_latipes_hni
ENSTRUG00000021737	lsm4	100	93.750	ENSORLG00015010205	lsm4	100	93.750	Oryzias_latipes_hsok
ENSTRUG00000021737	lsm4	100	93.750	ENSOMEG00000003606	lsm4	100	93.750	Oryzias_melastigma
ENSTRUG00000021737	lsm4	69	93.878	ENSOGAG00000027992	LSM4	99	79.310	Otolemur_garnettii
ENSTRUG00000021737	lsm4	61	96.552	ENSOARG00000012553	LSM4	95	83.065	Ovis_aries
ENSTRUG00000021737	lsm4	62	96.591	ENSPPAG00000044045	-	98	78.400	Pan_paniscus
ENSTRUG00000021737	lsm4	62	96.591	ENSPPRG00000018264	LSM4	79	81.452	Panthera_pardus
ENSTRUG00000021737	lsm4	61	96.552	ENSPTIG00000006306	LSM4	79	81.301	Panthera_tigris_altaica
ENSTRUG00000021737	lsm4	62	96.591	ENSPTRG00000031470	LSM4	98	78.400	Pan_troglodytes
ENSTRUG00000021737	lsm4	62	96.591	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSTRUG00000021737	lsm4	100	87.500	ENSPKIG00000006154	lsm4	100	87.500	Paramormyrops_kingsleyae
ENSTRUG00000021737	lsm4	61	97.701	ENSPSIG00000012358	LSM4	96	85.926	Pelodiscus_sinensis
ENSTRUG00000021737	lsm4	62	94.318	ENSPEMG00000001358	Lsm4	79	79.839	Peromyscus_maniculatus_bairdii
ENSTRUG00000021737	lsm4	100	92.308	ENSPFOG00000000570	lsm4	76	92.308	Poecilia_formosa
ENSTRUG00000021737	lsm4	100	91.608	ENSPLAG00000016267	lsm4	100	91.608	Poecilia_latipinna
ENSTRUG00000021737	lsm4	100	92.308	ENSPMEG00000016378	lsm4	100	92.308	Poecilia_mexicana
ENSTRUG00000021737	lsm4	100	92.308	ENSPREG00000011290	lsm4	76	92.308	Poecilia_reticulata
ENSTRUG00000021737	lsm4	62	96.591	ENSPPYG00000009736	LSM4	79	81.452	Pongo_abelii
ENSTRUG00000021737	lsm4	51	94.521	ENSPCAG00000008513	LSM4	98	80.800	Procavia_capensis
ENSTRUG00000021737	lsm4	69	93.939	ENSPCOG00000019837	LSM4	79	80.645	Propithecus_coquereli
ENSTRUG00000021737	lsm4	62	96.591	ENSPVAG00000015383	LSM4	79	81.452	Pteropus_vampyrus
ENSTRUG00000021737	lsm4	100	91.781	ENSPNYG00000016794	lsm4	100	92.466	Pundamilia_nyererei
ENSTRUG00000021737	lsm4	95	89.706	ENSPNAG00000016598	lsm4	100	89.706	Pygocentrus_nattereri
ENSTRUG00000021737	lsm4	62	94.318	ENSRNOG00000019572	Lsm4	79	79.839	Rattus_norvegicus
ENSTRUG00000021737	lsm4	62	96.591	ENSRBIG00000024717	LSM4	98	78.400	Rhinopithecus_bieti
ENSTRUG00000021737	lsm4	62	96.591	ENSRROG00000045706	LSM4	98	78.400	Rhinopithecus_roxellana
ENSTRUG00000021737	lsm4	58	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSTRUG00000021737	lsm4	52	95.946	ENSSBOG00000022455	LSM4	77	79.091	Saimiri_boliviensis_boliviensis
ENSTRUG00000021737	lsm4	62	97.727	ENSSHAG00000011559	LSM4	99	85.000	Sarcophilus_harrisii
ENSTRUG00000021737	lsm4	100	87.500	ENSSFOG00015021067	lsm4	100	87.500	Scleropages_formosus
ENSTRUG00000021737	lsm4	100	77.333	ENSSMAG00000021020	lsm4	100	90.000	Scophthalmus_maximus
ENSTRUG00000021737	lsm4	100	81.437	ENSSDUG00000009588	lsm4	100	81.437	Seriola_dumerili
ENSTRUG00000021737	lsm4	100	80.952	ENSSLDG00000006827	lsm4	100	80.952	Seriola_lalandi_dorsalis
ENSTRUG00000021737	lsm4	61	97.701	ENSSPUG00000010166	LSM4	70	82.114	Sphenodon_punctatus
ENSTRUG00000021737	lsm4	100	89.404	ENSSPAG00000011615	lsm4	100	89.404	Stegastes_partitus
ENSTRUG00000021737	lsm4	62	96.591	ENSSSCG00000034314	LSM4	79	81.452	Sus_scrofa
ENSTRUG00000021737	lsm4	100	96.528	ENSTNIG00000010191	lsm4	100	96.528	Tetraodon_nigroviridis
ENSTRUG00000021737	lsm4	62	96.591	ENSUAMG00000000665	LSM4	92	80.800	Ursus_americanus
ENSTRUG00000021737	lsm4	62	96.591	ENSUMAG00000009013	LSM4	79	81.452	Ursus_maritimus
ENSTRUG00000021737	lsm4	61	96.552	ENSVVUG00000008136	LSM4	56	81.301	Vulpes_vulpes
ENSTRUG00000021737	lsm4	69	95.918	ENSXETG00000024933	lsm4	99	86.331	Xenopus_tropicalis
ENSTRUG00000021737	lsm4	100	93.706	ENSXMAG00000026672	lsm4	76	93.706	Xiphophorus_maculatus