EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000022908 (Gene tree)
Gene ID: 101076252
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 4529 bases
Position: chr2:2405082-2409610
Accession: 101076252
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000027095	RRM_1	PF00076.22	5.6e-32	1	2
ENSTRUP00000027095	RRM_1	PF00076.22	5.6e-32	2	2
ENSTRUP00000027095	RRM_3	PF08777.11	2.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000027204	-	1940	XM_011614900	ENSTRUP00000027095	296 (aa)	XP_011613202	H2TQY8

Gene Model

Click here to download ENSTRUG00000022908's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG
tru05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000022908's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000022908	srsf5a	64	60.106	ENSTRUG00000011891	srsf4	61	60.847
ENSTRUG00000022908	srsf5a	66	66.495	ENSTRUG00000017811	srsf5b	59	68.063
ENSTRUG00000022908	srsf5a	60	41.622	ENSTRUG00000003691	srsf1a	67	41.622
ENSTRUG00000022908	srsf5a	73	36.245	ENSTRUG00000017058	-	86	38.235

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000022908	srsf5a	82	89.256	ENSAPOG00000017395	srsf5a	79	89.669	Acanthochromis_polyacanthus
ENSTRUG00000022908	srsf5a	81	85.062	ENSACIG00000011892	srsf5a	98	89.362	Amphilophus_citrinellus
ENSTRUG00000022908	srsf5a	82	84.553	ENSAOCG00000014967	srsf5a	100	84.437	Amphiprion_ocellaris
ENSTRUG00000022908	srsf5a	82	84.553	ENSAPEG00000009297	srsf5a	100	84.437	Amphiprion_percula
ENSTRUG00000022908	srsf5a	100	89.527	ENSATEG00000000198	srsf5a	100	89.865	Anabas_testudineus
ENSTRUG00000022908	srsf5a	65	74.742	ENSAPLG00000002469	-	70	73.711	Anas_platyrhynchos
ENSTRUG00000022908	srsf5a	65	75.000	ENSACAG00000029015	-	68	72.396	Anolis_carolinensis
ENSTRUG00000022908	srsf5a	81	93.333	ENSACLG00000027166	srsf5a	100	91.582	Astatotilapia_calliptera
ENSTRUG00000022908	srsf5a	73	79.279	ENSAMXG00000030476	srsf5a	67	80.208	Astyanax_mexicanus
ENSTRUG00000022908	srsf5a	65	77.202	ENSCPBG00000021518	-	70	75.648	Chrysemys_picta_bellii
ENSTRUG00000022908	srsf5a	65	58.163	ENSCSAVG00000011376	-	78	58.163	Ciona_savignyi
ENSTRUG00000022908	srsf5a	82	91.770	ENSCSEG00000008109	srsf5a	77	91.736	Cynoglossus_semilaevis
ENSTRUG00000022908	srsf5a	79	82.917	ENSCVAG00000016982	srsf5a	96	84.962	Cyprinodon_variegatus
ENSTRUG00000022908	srsf5a	65	82.234	ENSDARG00000029818	srsf5a	100	80.142	Danio_rerio
ENSTRUG00000022908	srsf5a	65	74.272	ENSELUG00000020439	srsf5a	62	79.293	Esox_lucius
ENSTRUG00000022908	srsf5a	65	74.479	ENSFALG00000005098	-	64	72.396	Ficedula_albicollis
ENSTRUG00000022908	srsf5a	82	79.457	ENSFHEG00000003955	srsf5a	97	81.379	Fundulus_heteroclitus
ENSTRUG00000022908	srsf5a	65	81.771	ENSGMOG00000000869	srsf5a	94	81.771	Gadus_morhua
ENSTRUG00000022908	srsf5a	65	74.479	ENSGALG00000033259	SRSF5A	63	73.438	Gallus_gallus
ENSTRUG00000022908	srsf5a	83	69.841	ENSGAFG00000018237	srsf5a	74	60.643	Gambusia_affinis
ENSTRUG00000022908	srsf5a	65	77.202	ENSGAGG00000007312	-	70	75.648	Gopherus_agassizii
ENSTRUG00000022908	srsf5a	81	92.500	ENSHBUG00000014048	srsf5a	100	90.909	Haplochromis_burtoni
ENSTRUG00000022908	srsf5a	65	85.417	ENSHCOG00000017557	srsf5a	62	84.896	Hippocampus_comes
ENSTRUG00000022908	srsf5a	65	84.375	ENSIPUG00000003439	srsf5a	69	83.854	Ictalurus_punctatus
ENSTRUG00000022908	srsf5a	65	81.250	ENSKMAG00000014937	srsf5a	58	82.292	Kryptolebias_marmoratus
ENSTRUG00000022908	srsf5a	80	90.083	ENSLBEG00000017153	srsf5a	91	86.777	Labrus_bergylta
ENSTRUG00000022908	srsf5a	87	65.251	ENSLACG00000017874	-	70	77.083	Latimeria_chalumnae
ENSTRUG00000022908	srsf5a	100	60.568	ENSLOCG00000014075	srsf5a	61	81.250	Lepisosteus_oculatus
ENSTRUG00000022908	srsf5a	100	84.122	ENSMAMG00000000192	srsf5a	100	83.446	Mastacembelus_armatus
ENSTRUG00000022908	srsf5a	81	92.917	ENSMZEG00005010485	srsf5a	100	91.246	Maylandia_zebra
ENSTRUG00000022908	srsf5a	69	72.816	ENSMGAG00000011888	-	98	72.881	Meleagris_gallopavo
ENSTRUG00000022908	srsf5a	81	91.250	ENSMMOG00000009793	srsf5a	78	91.286	Mola_mola
ENSTRUG00000022908	srsf5a	100	80.068	ENSMALG00000021194	srsf5a	100	78.716	Monopterus_albus
ENSTRUG00000022908	srsf5a	81	92.500	ENSNBRG00000000771	srsf5a	100	90.909	Neolamprologus_brichardi
ENSTRUG00000022908	srsf5a	81	92.500	ENSONIG00000019583	srsf5a	100	90.909	Oreochromis_niloticus
ENSTRUG00000022908	srsf5a	81	73.750	ENSORLG00000009268	srsf5a	100	79.730	Oryzias_latipes
ENSTRUG00000022908	srsf5a	81	73.750	ENSORLG00020003281	srsf5	100	79.730	Oryzias_latipes_hni
ENSTRUG00000022908	srsf5a	81	73.750	ENSORLG00015023075	srsf5	100	79.730	Oryzias_latipes_hsok
ENSTRUG00000022908	srsf5a	81	72.385	ENSOMEG00000000628	srsf5a	83	82.158	Oryzias_melastigma
ENSTRUG00000022908	srsf5a	65	83.854	ENSPKIG00000002054	srsf5a	68	81.771	Paramormyrops_kingsleyae
ENSTRUG00000022908	srsf5a	65	76.166	ENSPSIG00000008238	-	69	73.057	Pelodiscus_sinensis
ENSTRUG00000022908	srsf5a	83	63.780	ENSPMGG00000020125	srsf5a	55	77.083	Periophthalmus_magnuspinnatus
ENSTRUG00000022908	srsf5a	83	80.078	ENSPFOG00000022993	srsf5a	100	66.563	Poecilia_formosa
ENSTRUG00000022908	srsf5a	82	80.000	ENSPLAG00000005508	srsf5a	99	66.460	Poecilia_latipinna
ENSTRUG00000022908	srsf5a	83	80.469	ENSPMEG00000016339	srsf5a	100	66.563	Poecilia_mexicana
ENSTRUG00000022908	srsf5a	83	80.469	ENSPREG00000018091	srsf5a	79	70.800	Poecilia_reticulata
ENSTRUG00000022908	srsf5a	81	92.917	ENSPNYG00000021245	srsf5a	100	91.246	Pundamilia_nyererei
ENSTRUG00000022908	srsf5a	65	81.218	ENSPNAG00000021333	srsf5a	66	81.771	Pygocentrus_nattereri
ENSTRUG00000022908	srsf5a	65	79.397	ENSSFOG00015008377	srsf5	66	81.771	Scleropages_formosus
ENSTRUG00000022908	srsf5a	100	82.524	ENSSMAG00000010899	srsf5a	100	84.142	Scophthalmus_maximus
ENSTRUG00000022908	srsf5a	82	88.430	ENSSDUG00000006103	srsf5a	100	88.591	Seriola_dumerili
ENSTRUG00000022908	srsf5a	82	88.843	ENSSLDG00000004146	srsf5a	100	88.333	Seriola_lalandi_dorsalis
ENSTRUG00000022908	srsf5a	65	71.354	ENSSPUG00000002052	-	68	70.312	Sphenodon_punctatus
ENSTRUG00000022908	srsf5a	81	88.750	ENSSPAG00000002821	srsf5a	100	84.564	Stegastes_partitus
ENSTRUG00000022908	srsf5a	65	75.000	ENSTGUG00000011492	-	68	72.396	Taeniopygia_guttata
ENSTRUG00000022908	srsf5a	65	79.793	ENSXETG00000017937	srsf5a	72	77.202	Xenopus_tropicalis
ENSTRUG00000022908	srsf5a	83	80.876	ENSXCOG00000015338	srsf5a	79	81.377	Xiphophorus_couchianus
ENSTRUG00000022908	srsf5a	83	81.961	ENSXMAG00000012823	srsf5a	61	87.047	Xiphophorus_maculatus