EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000022913 (Gene tree)
Gene ID: 101074881
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 2018 bases
Position: chr20:7516261-7518278
Accession: 101074881
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000051649	LSM	PF01423.22	1.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000050844	-	1369	XM_003974178	ENSTRUP00000051649	103 (aa)	XP_003974227	H2U6A6

Gene Model

Click here to download ENSTRUG00000022913's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03018	RNA degradation	KEGG
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000022913's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000022913	lsm7	58	41.667	ENSTRUG00000004040	snrpg	65	41.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000022913	lsm7	100	95.146	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSTRUG00000022913	lsm7	91	97.872	ENSAPOG00000015573	lsm7	81	97.872	Acanthochromis_polyacanthus
ENSTRUG00000022913	lsm7	100	92.233	ENSAMEG00000005484	LSM7	100	92.233	Ailuropoda_melanoleuca
ENSTRUG00000022913	lsm7	95	96.939	ENSACIG00000006498	lsm7	78	96.939	Amphilophus_citrinellus
ENSTRUG00000022913	lsm7	99	97.059	ENSAOCG00000001077	lsm7	92	98.020	Amphiprion_ocellaris
ENSTRUG00000022913	lsm7	100	98.058	ENSAPEG00000000694	lsm7	100	98.058	Amphiprion_percula
ENSTRUG00000022913	lsm7	100	96.117	ENSAPEG00000024447	lsm7	92	98.020	Amphiprion_percula
ENSTRUG00000022913	lsm7	100	98.058	ENSATEG00000008557	lsm7	100	98.058	Anabas_testudineus
ENSTRUG00000022913	lsm7	100	86.408	ENSANAG00000022222	-	100	86.408	Aotus_nancymaae
ENSTRUG00000022913	lsm7	100	95.146	ENSANAG00000037196	-	100	95.146	Aotus_nancymaae
ENSTRUG00000022913	lsm7	100	97.087	ENSACLG00000021021	lsm7	100	97.087	Astatotilapia_calliptera
ENSTRUG00000022913	lsm7	100	97.087	ENSAMXG00000037622	lsm7	100	97.087	Astyanax_mexicanus
ENSTRUG00000022913	lsm7	100	95.146	ENSBTAG00000004521	LSM7	100	95.146	Bos_taurus
ENSTRUG00000022913	lsm7	97	58.000	WBGene00003081	lsm-7	96	58.000	Caenorhabditis_elegans
ENSTRUG00000022913	lsm7	54	94.643	ENSCJAG00000039713	-	68	94.643	Callithrix_jacchus
ENSTRUG00000022913	lsm7	98	94.059	ENSCAFG00000019409	LSM7	98	94.059	Canis_familiaris
ENSTRUG00000022913	lsm7	98	94.059	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSTRUG00000022913	lsm7	100	93.204	ENSCHIG00000023663	LSM7	100	93.204	Capra_hircus
ENSTRUG00000022913	lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSTRUG00000022913	lsm7	100	95.146	ENSCPOG00000014025	LSM7	100	95.146	Cavia_porcellus
ENSTRUG00000022913	lsm7	98	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSTRUG00000022913	lsm7	100	95.146	ENSCATG00000023543	LSM7	100	95.146	Cercocebus_atys
ENSTRUG00000022913	lsm7	100	95.146	ENSCLAG00000011635	LSM7	100	95.146	Chinchilla_lanigera
ENSTRUG00000022913	lsm7	100	95.146	ENSCSAG00000011599	LSM7	100	95.146	Chlorocebus_sabaeus
ENSTRUG00000022913	lsm7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSTRUG00000022913	lsm7	93	79.167	ENSCING00000022134	-	97	79.167	Ciona_intestinalis
ENSTRUG00000022913	lsm7	100	95.146	ENSCANG00000035525	LSM7	100	95.146	Colobus_angolensis_palliatus
ENSTRUG00000022913	lsm7	100	94.175	ENSCGRG00001000807	-	100	94.175	Cricetulus_griseus_chok1gshd
ENSTRUG00000022913	lsm7	87	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSTRUG00000022913	lsm7	98	94.059	ENSCGRG00000014355	-	97	94.059	Cricetulus_griseus_crigri
ENSTRUG00000022913	lsm7	87	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSTRUG00000022913	lsm7	98	98.020	ENSCSEG00000014900	lsm7	86	98.020	Cynoglossus_semilaevis
ENSTRUG00000022913	lsm7	98	98.020	ENSCVAG00000021091	lsm7	94	98.020	Cyprinodon_variegatus
ENSTRUG00000022913	lsm7	100	98.058	ENSDARG00000058328	lsm7	100	98.058	Danio_rerio
ENSTRUG00000022913	lsm7	99	93.137	ENSDORG00000024460	Lsm7	100	93.137	Dipodomys_ordii
ENSTRUG00000022913	lsm7	94	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSTRUG00000022913	lsm7	98	92.079	ENSETEG00000012788	LSM7	99	92.079	Echinops_telfairi
ENSTRUG00000022913	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSTRUG00000022913	lsm7	100	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSTRUG00000022913	lsm7	100	91.262	ENSECAG00000001440	LSM7	66	91.262	Equus_caballus
ENSTRUG00000022913	lsm7	100	94.175	ENSFCAG00000003445	LSM7	100	94.175	Felis_catus
ENSTRUG00000022913	lsm7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSTRUG00000022913	lsm7	93	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSTRUG00000022913	lsm7	98	98.020	ENSFHEG00000006349	lsm7	90	98.020	Fundulus_heteroclitus
ENSTRUG00000022913	lsm7	100	94.175	ENSGMOG00000013320	lsm7	100	94.175	Gadus_morhua
ENSTRUG00000022913	lsm7	100	98.058	ENSGAFG00000013902	lsm7	100	98.058	Gambusia_affinis
ENSTRUG00000022913	lsm7	100	95.146	ENSGACG00000010390	lsm7	100	95.146	Gasterosteus_aculeatus
ENSTRUG00000022913	lsm7	100	95.146	ENSGGOG00000010172	LSM7	100	95.146	Gorilla_gorilla
ENSTRUG00000022913	lsm7	100	97.087	ENSHBUG00000004616	lsm7	100	97.087	Haplochromis_burtoni
ENSTRUG00000022913	lsm7	100	95.146	ENSHGLG00000010587	LSM7	100	95.146	Heterocephalus_glaber_female
ENSTRUG00000022913	lsm7	100	95.146	ENSHGLG00100000852	LSM7	100	95.146	Heterocephalus_glaber_male
ENSTRUG00000022913	lsm7	98	97.030	ENSHCOG00000020252	lsm7	100	97.030	Hippocampus_comes
ENSTRUG00000022913	lsm7	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSTRUG00000022913	lsm7	98	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSTRUG00000022913	lsm7	97	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSTRUG00000022913	lsm7	100	98.058	ENSKMAG00000022151	lsm7	100	98.058	Kryptolebias_marmoratus
ENSTRUG00000022913	lsm7	100	97.087	ENSLBEG00000005203	lsm7	100	97.087	Labrus_bergylta
ENSTRUG00000022913	lsm7	90	95.699	ENSLACG00000015700	LSM7	100	94.175	Latimeria_chalumnae
ENSTRUG00000022913	lsm7	98	97.030	ENSLOCG00000004356	lsm7	98	97.030	Lepisosteus_oculatus
ENSTRUG00000022913	lsm7	98	95.050	ENSLAFG00000029302	LSM7	98	95.050	Loxodonta_africana
ENSTRUG00000022913	lsm7	100	95.146	ENSMFAG00000044572	LSM7	100	95.146	Macaca_fascicularis
ENSTRUG00000022913	lsm7	100	95.146	ENSMMUG00000000452	LSM7	100	95.146	Macaca_mulatta
ENSTRUG00000022913	lsm7	100	95.146	ENSMNEG00000004393	LSM7	100	95.146	Macaca_nemestrina
ENSTRUG00000022913	lsm7	100	95.146	ENSMLEG00000030852	LSM7	100	95.146	Mandrillus_leucophaeus
ENSTRUG00000022913	lsm7	100	97.087	ENSMAMG00000005410	lsm7	100	97.087	Mastacembelus_armatus
ENSTRUG00000022913	lsm7	100	97.087	ENSMZEG00005028055	lsm7	100	97.087	Maylandia_zebra
ENSTRUG00000022913	lsm7	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSTRUG00000022913	lsm7	100	94.175	ENSMAUG00000009276	Lsm7	100	94.175	Mesocricetus_auratus
ENSTRUG00000022913	lsm7	100	94.175	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSTRUG00000022913	lsm7	100	95.146	ENSMICG00000028619	-	100	95.146	Microcebus_murinus
ENSTRUG00000022913	lsm7	100	94.175	ENSMOCG00000016925	Lsm7	100	94.175	Microtus_ochrogaster
ENSTRUG00000022913	lsm7	100	98.058	ENSMMOG00000019645	lsm7	98	98.058	Mola_mola
ENSTRUG00000022913	lsm7	100	96.117	ENSMODG00000004722	LSM7	100	96.117	Monodelphis_domestica
ENSTRUG00000022913	lsm7	100	97.087	ENSMALG00000014511	lsm7	79	97.087	Monopterus_albus
ENSTRUG00000022913	lsm7	99	94.118	MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	Mus_caroli
ENSTRUG00000022913	lsm7	99	94.118	ENSMUSG00000035215	Lsm7	99	94.118	Mus_musculus
ENSTRUG00000022913	lsm7	99	94.118	MGP_PahariEiJ_G0031020	Lsm7	99	94.118	Mus_pahari
ENSTRUG00000022913	lsm7	99	94.118	MGP_SPRETEiJ_G0016425	Lsm7	99	94.118	Mus_spretus
ENSTRUG00000022913	lsm7	99	89.216	ENSMLUG00000024002	-	94	89.216	Myotis_lucifugus
ENSTRUG00000022913	lsm7	100	92.233	ENSMLUG00000013097	-	100	92.233	Myotis_lucifugus
ENSTRUG00000022913	lsm7	100	93.204	ENSNGAG00000021637	Lsm7	100	93.204	Nannospalax_galili
ENSTRUG00000022913	lsm7	91	97.872	ENSNBRG00000001237	-	82	95.146	Neolamprologus_brichardi
ENSTRUG00000022913	lsm7	98	97.030	ENSNBRG00000015770	lsm7	87	97.030	Neolamprologus_brichardi
ENSTRUG00000022913	lsm7	100	95.146	ENSNLEG00000002265	LSM7	100	95.146	Nomascus_leucogenys
ENSTRUG00000022913	lsm7	100	95.146	ENSODEG00000013590	-	100	95.146	Octodon_degus
ENSTRUG00000022913	lsm7	100	75.728	ENSODEG00000008190	-	100	75.728	Octodon_degus
ENSTRUG00000022913	lsm7	100	88.350	ENSODEG00000018769	-	100	88.350	Octodon_degus
ENSTRUG00000022913	lsm7	100	97.087	ENSONIG00000001801	lsm7	89	97.087	Oreochromis_niloticus
ENSTRUG00000022913	lsm7	100	98.058	ENSORLG00000023951	lsm7	100	98.058	Oryzias_latipes
ENSTRUG00000022913	lsm7	100	98.058	ENSORLG00020022226	lsm7	100	98.058	Oryzias_latipes_hni
ENSTRUG00000022913	lsm7	100	96.117	ENSORLG00015020044	lsm7	94	98.020	Oryzias_latipes_hsok
ENSTRUG00000022913	lsm7	100	98.058	ENSOMEG00000012806	lsm7	100	98.058	Oryzias_melastigma
ENSTRUG00000022913	lsm7	100	83.495	ENSOGAG00000024373	-	100	83.495	Otolemur_garnettii
ENSTRUG00000022913	lsm7	98	93.069	ENSOGAG00000000144	-	99	93.069	Otolemur_garnettii
ENSTRUG00000022913	lsm7	100	93.204	ENSOARG00000014013	LSM7	100	93.204	Ovis_aries
ENSTRUG00000022913	lsm7	100	95.146	ENSPPAG00000026500	LSM7	100	95.146	Pan_paniscus
ENSTRUG00000022913	lsm7	100	94.175	ENSPPRG00000008624	LSM7	100	94.175	Panthera_pardus
ENSTRUG00000022913	lsm7	98	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSTRUG00000022913	lsm7	100	95.146	ENSPTRG00000010233	LSM7	100	95.146	Pan_troglodytes
ENSTRUG00000022913	lsm7	100	95.146	ENSPANG00000020668	LSM7	100	95.146	Papio_anubis
ENSTRUG00000022913	lsm7	100	98.058	ENSPKIG00000011325	lsm7	100	98.058	Paramormyrops_kingsleyae
ENSTRUG00000022913	lsm7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSTRUG00000022913	lsm7	100	98.058	ENSPMGG00000006498	lsm7	100	98.058	Periophthalmus_magnuspinnatus
ENSTRUG00000022913	lsm7	100	96.117	ENSPCIG00000030454	LSM7	100	96.117	Phascolarctos_cinereus
ENSTRUG00000022913	lsm7	100	95.146	ENSPFOG00000012467	lsm7	91	95.146	Poecilia_formosa
ENSTRUG00000022913	lsm7	100	95.146	ENSPLAG00000000252	lsm7	94	96.078	Poecilia_latipinna
ENSTRUG00000022913	lsm7	100	95.146	ENSPMEG00000000587	lsm7	94	96.078	Poecilia_mexicana
ENSTRUG00000022913	lsm7	78	77.778	ENSPREG00000016718	lsm7	65	77.778	Poecilia_reticulata
ENSTRUG00000022913	lsm7	71	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSTRUG00000022913	lsm7	100	95.146	ENSPCOG00000017177	LSM7	100	95.146	Propithecus_coquereli
ENSTRUG00000022913	lsm7	100	97.087	ENSPNYG00000006938	lsm7	100	97.087	Pundamilia_nyererei
ENSTRUG00000022913	lsm7	100	97.087	ENSPNAG00000010141	lsm7	100	97.087	Pygocentrus_nattereri
ENSTRUG00000022913	lsm7	99	95.098	ENSRNOG00000019552	Lsm7	99	95.098	Rattus_norvegicus
ENSTRUG00000022913	lsm7	100	95.146	ENSRBIG00000035978	LSM7	100	95.146	Rhinopithecus_bieti
ENSTRUG00000022913	lsm7	100	95.146	ENSRROG00000034044	LSM7	100	95.146	Rhinopithecus_roxellana
ENSTRUG00000022913	lsm7	83	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSTRUG00000022913	lsm7	100	95.146	ENSSBOG00000034899	LSM7	100	95.146	Saimiri_boliviensis_boliviensis
ENSTRUG00000022913	lsm7	100	96.117	ENSSFOG00015006728	lsm7	100	96.117	Scleropages_formosus
ENSTRUG00000022913	lsm7	100	96.117	ENSSMAG00000004195	lsm7	93	98.020	Scophthalmus_maximus
ENSTRUG00000022913	lsm7	100	98.058	ENSSDUG00000001863	lsm7	100	98.058	Seriola_dumerili
ENSTRUG00000022913	lsm7	100	98.058	ENSSLDG00000016339	lsm7	100	98.058	Seriola_lalandi_dorsalis
ENSTRUG00000022913	lsm7	100	98.058	ENSSPAG00000015221	lsm7	100	98.058	Stegastes_partitus
ENSTRUG00000022913	lsm7	98	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSTRUG00000022913	lsm7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSTRUG00000022913	lsm7	100	100.000	ENSTNIG00000015525	lsm7	100	100.000	Tetraodon_nigroviridis
ENSTRUG00000022913	lsm7	68	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSTRUG00000022913	lsm7	100	92.233	ENSUAMG00000000912	LSM7	86	92.233	Ursus_americanus
ENSTRUG00000022913	lsm7	98	94.059	ENSUMAG00000006556	LSM7	78	95.000	Ursus_maritimus
ENSTRUG00000022913	lsm7	69	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSTRUG00000022913	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSTRUG00000022913	lsm7	99	97.059	ENSXCOG00000002572	lsm7	100	97.059	Xiphophorus_couchianus
ENSTRUG00000022913	lsm7	100	98.058	ENSXMAG00000018630	lsm7	100	98.058	Xiphophorus_maculatus