EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000023281 (Gene tree)
Gene ID: 101078596
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 5071 bases
Position: chr4:8856532-8861602
Accession: 101078596
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000049979	SMN	PF06003.12	4.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000053195	-	4053	XM_003963953	ENSTRUP00000049979	238 (aa)	XP_003964002	H2SVC8

Gene Model

Click here to download ENSTRUG00000023281's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000023281's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000023281	smndc1	100	74.370	ENSG00000119953	SMNDC1	100	74.370	Homo_sapiens
ENSTRUG00000023281	smndc1	100	85.294	ENSAPOG00000021772	smndc1	100	85.294	Acanthochromis_polyacanthus
ENSTRUG00000023281	smndc1	100	73.950	ENSAMEG00000005251	SMNDC1	100	73.950	Ailuropoda_melanoleuca
ENSTRUG00000023281	smndc1	100	83.193	ENSACIG00000004819	smndc1	100	83.193	Amphilophus_citrinellus
ENSTRUG00000023281	smndc1	100	86.134	ENSAOCG00000017869	smndc1	100	86.134	Amphiprion_ocellaris
ENSTRUG00000023281	smndc1	100	86.134	ENSAPEG00000007752	smndc1	100	86.134	Amphiprion_percula
ENSTRUG00000023281	smndc1	100	85.714	ENSATEG00000006830	smndc1	100	85.714	Anabas_testudineus
ENSTRUG00000023281	smndc1	83	73.737	ENSAPLG00000004322	SMNDC1	100	73.737	Anas_platyrhynchos
ENSTRUG00000023281	smndc1	100	73.950	ENSACAG00000005983	SMNDC1	100	73.950	Anolis_carolinensis
ENSTRUG00000023281	smndc1	100	73.950	ENSANAG00000032875	SMNDC1	100	73.950	Aotus_nancymaae
ENSTRUG00000023281	smndc1	100	83.613	ENSACLG00000016360	smndc1	100	83.613	Astatotilapia_calliptera
ENSTRUG00000023281	smndc1	100	76.471	ENSAMXG00000020310	smndc1	100	76.471	Astyanax_mexicanus
ENSTRUG00000023281	smndc1	100	73.950	ENSBTAG00000000551	SMNDC1	100	73.950	Bos_taurus
ENSTRUG00000023281	smndc1	100	73.950	ENSCJAG00000018624	SMNDC1	100	73.950	Callithrix_jacchus
ENSTRUG00000023281	smndc1	100	73.950	ENSCAFG00000010720	SMNDC1	100	73.950	Canis_familiaris
ENSTRUG00000023281	smndc1	100	73.950	ENSCAFG00020011913	SMNDC1	100	73.950	Canis_lupus_dingo
ENSTRUG00000023281	smndc1	100	73.950	ENSCHIG00000010604	SMNDC1	100	73.950	Capra_hircus
ENSTRUG00000023281	smndc1	100	73.950	ENSTSYG00000026454	SMNDC1	100	73.950	Carlito_syrichta
ENSTRUG00000023281	smndc1	100	61.250	ENSCAPG00000009132	SMNDC1	100	70.149	Cavia_aperea
ENSTRUG00000023281	smndc1	100	73.950	ENSCPOG00000031666	SMNDC1	100	73.950	Cavia_porcellus
ENSTRUG00000023281	smndc1	100	73.950	ENSCCAG00000021793	SMNDC1	100	73.950	Cebus_capucinus
ENSTRUG00000023281	smndc1	100	73.529	ENSCATG00000035910	SMNDC1	100	73.529	Cercocebus_atys
ENSTRUG00000023281	smndc1	100	73.950	ENSCLAG00000002838	SMNDC1	100	73.950	Chinchilla_lanigera
ENSTRUG00000023281	smndc1	100	73.950	ENSCSAG00000005169	SMNDC1	100	73.950	Chlorocebus_sabaeus
ENSTRUG00000023281	smndc1	81	69.948	ENSCHOG00000002936	SMNDC1	100	69.948	Choloepus_hoffmanni
ENSTRUG00000023281	smndc1	100	74.370	ENSCPBG00000012837	SMNDC1	100	74.370	Chrysemys_picta_bellii
ENSTRUG00000023281	smndc1	100	57.563	ENSCANG00000036994	-	100	57.563	Colobus_angolensis_palliatus
ENSTRUG00000023281	smndc1	100	73.950	ENSCANG00000031720	-	100	73.950	Colobus_angolensis_palliatus
ENSTRUG00000023281	smndc1	100	68.487	ENSCANG00000034620	-	100	68.487	Colobus_angolensis_palliatus
ENSTRUG00000023281	smndc1	100	73.529	ENSCGRG00001012973	Smndc1	100	73.529	Cricetulus_griseus_chok1gshd
ENSTRUG00000023281	smndc1	100	73.529	ENSCGRG00000012396	Smndc1	100	73.529	Cricetulus_griseus_crigri
ENSTRUG00000023281	smndc1	100	84.034	ENSCSEG00000015621	smndc1	100	84.034	Cynoglossus_semilaevis
ENSTRUG00000023281	smndc1	100	82.773	ENSCVAG00000020432	smndc1	100	82.773	Cyprinodon_variegatus
ENSTRUG00000023281	smndc1	100	79.498	ENSDARG00000056235	smndc1	100	79.498	Danio_rerio
ENSTRUG00000023281	smndc1	100	73.950	ENSDNOG00000016387	SMNDC1	83	73.950	Dasypus_novemcinctus
ENSTRUG00000023281	smndc1	100	73.950	ENSDORG00000023715	Smndc1	100	73.950	Dipodomys_ordii
ENSTRUG00000023281	smndc1	95	40.562	FBgn0039977	CG17454	97	42.449	Drosophila_melanogaster
ENSTRUG00000023281	smndc1	100	65.145	ENSEBUG00000010929	smndc1	100	65.975	Eptatretus_burgeri
ENSTRUG00000023281	smndc1	100	73.950	ENSEASG00005014930	SMNDC1	100	73.950	Equus_asinus_asinus
ENSTRUG00000023281	smndc1	100	73.950	ENSECAG00000029973	SMNDC1	100	73.950	Equus_caballus
ENSTRUG00000023281	smndc1	83	53.030	ENSEEUG00000013407	-	100	53.030	Erinaceus_europaeus
ENSTRUG00000023281	smndc1	100	78.992	ENSELUG00000000227	smndc1	100	78.992	Esox_lucius
ENSTRUG00000023281	smndc1	100	73.950	ENSFCAG00000027353	SMNDC1	100	73.950	Felis_catus
ENSTRUG00000023281	smndc1	100	73.950	ENSFALG00000002306	SMNDC1	100	73.950	Ficedula_albicollis
ENSTRUG00000023281	smndc1	100	74.370	ENSFDAG00000006468	SMNDC1	100	74.370	Fukomys_damarensis
ENSTRUG00000023281	smndc1	100	82.773	ENSFHEG00000020150	smndc1	100	82.773	Fundulus_heteroclitus
ENSTRUG00000023281	smndc1	100	80.672	ENSGMOG00000016585	smndc1	100	80.672	Gadus_morhua
ENSTRUG00000023281	smndc1	100	73.950	ENSGALG00000008561	SMNDC1	100	73.950	Gallus_gallus
ENSTRUG00000023281	smndc1	100	82.353	ENSGAFG00000011582	smndc1	100	82.353	Gambusia_affinis
ENSTRUG00000023281	smndc1	100	84.454	ENSGACG00000009468	smndc1	100	84.454	Gasterosteus_aculeatus
ENSTRUG00000023281	smndc1	100	74.370	ENSGAGG00000024547	SMNDC1	100	74.370	Gopherus_agassizii
ENSTRUG00000023281	smndc1	100	73.950	ENSGGOG00000010071	SMNDC1	100	73.950	Gorilla_gorilla
ENSTRUG00000023281	smndc1	100	83.613	ENSHBUG00000017596	smndc1	100	83.613	Haplochromis_burtoni
ENSTRUG00000023281	smndc1	100	74.370	ENSHGLG00000013390	-	100	74.370	Heterocephalus_glaber_female
ENSTRUG00000023281	smndc1	100	55.510	ENSHGLG00000001157	-	100	55.102	Heterocephalus_glaber_female
ENSTRUG00000023281	smndc1	100	60.816	ENSHGLG00100004278	-	100	59.109	Heterocephalus_glaber_male
ENSTRUG00000023281	smndc1	100	74.370	ENSHGLG00100004814	-	100	74.370	Heterocephalus_glaber_male
ENSTRUG00000023281	smndc1	100	81.172	ENSHCOG00000000783	smndc1	100	81.172	Hippocampus_comes
ENSTRUG00000023281	smndc1	100	78.992	ENSIPUG00000004217	smndc1	100	78.992	Ictalurus_punctatus
ENSTRUG00000023281	smndc1	100	73.950	ENSSTOG00000006088	SMNDC1	100	73.950	Ictidomys_tridecemlineatus
ENSTRUG00000023281	smndc1	100	73.950	ENSJJAG00000019974	Smndc1	100	73.950	Jaculus_jaculus
ENSTRUG00000023281	smndc1	100	84.034	ENSKMAG00000020134	smndc1	100	84.034	Kryptolebias_marmoratus
ENSTRUG00000023281	smndc1	100	83.613	ENSLBEG00000004598	smndc1	100	83.613	Labrus_bergylta
ENSTRUG00000023281	smndc1	100	73.950	ENSLACG00000007784	SMNDC1	100	73.950	Latimeria_chalumnae
ENSTRUG00000023281	smndc1	100	78.992	ENSLOCG00000012355	smndc1	100	78.992	Lepisosteus_oculatus
ENSTRUG00000023281	smndc1	100	73.529	ENSLAFG00000014353	SMNDC1	100	73.529	Loxodonta_africana
ENSTRUG00000023281	smndc1	100	63.025	ENSMFAG00000038381	-	100	63.025	Macaca_fascicularis
ENSTRUG00000023281	smndc1	100	73.950	ENSMFAG00000002433	-	100	73.950	Macaca_fascicularis
ENSTRUG00000023281	smndc1	100	63.025	ENSMMUG00000045875	-	100	63.025	Macaca_mulatta
ENSTRUG00000023281	smndc1	100	73.950	ENSMMUG00000007775	SMNDC1	100	73.950	Macaca_mulatta
ENSTRUG00000023281	smndc1	100	73.950	ENSMNEG00000042963	-	100	73.950	Macaca_nemestrina
ENSTRUG00000023281	smndc1	100	65.546	ENSMNEG00000033853	-	100	65.546	Macaca_nemestrina
ENSTRUG00000023281	smndc1	100	69.038	ENSMLEG00000040236	SMNDC1	100	68.619	Mandrillus_leucophaeus
ENSTRUG00000023281	smndc1	89	81.690	ENSMAMG00000018233	smndc1	87	81.690	Mastacembelus_armatus
ENSTRUG00000023281	smndc1	100	83.613	ENSMZEG00005027510	smndc1	100	83.613	Maylandia_zebra
ENSTRUG00000023281	smndc1	84	74.000	ENSMGAG00000010777	SMNDC1	84	74.000	Meleagris_gallopavo
ENSTRUG00000023281	smndc1	100	73.950	ENSMAUG00000012243	-	100	73.950	Mesocricetus_auratus
ENSTRUG00000023281	smndc1	99	61.181	ENSMAUG00000005459	-	93	61.181	Mesocricetus_auratus
ENSTRUG00000023281	smndc1	100	73.529	ENSMICG00000027336	-	100	73.529	Microcebus_murinus
ENSTRUG00000023281	smndc1	100	63.866	ENSMICG00000031640	-	100	63.866	Microcebus_murinus
ENSTRUG00000023281	smndc1	100	73.529	ENSMOCG00000002458	Smndc1	100	73.529	Microtus_ochrogaster
ENSTRUG00000023281	smndc1	100	87.395	ENSMMOG00000008856	smndc1	100	87.395	Mola_mola
ENSTRUG00000023281	smndc1	100	74.370	ENSMODG00000010542	SMNDC1	100	74.370	Monodelphis_domestica
ENSTRUG00000023281	smndc1	100	84.034	ENSMALG00000017598	smndc1	100	84.034	Monopterus_albus
ENSTRUG00000023281	smndc1	100	73.950	MGP_CAROLIEiJ_G0023072	Smndc1	100	73.950	Mus_caroli
ENSTRUG00000023281	smndc1	100	73.950	ENSMUSG00000025024	Smndc1	100	73.950	Mus_musculus
ENSTRUG00000023281	smndc1	100	73.950	MGP_PahariEiJ_G0014560	Smndc1	100	73.950	Mus_pahari
ENSTRUG00000023281	smndc1	100	73.950	MGP_SPRETEiJ_G0023993	Smndc1	100	73.950	Mus_spretus
ENSTRUG00000023281	smndc1	100	73.950	ENSMPUG00000002089	SMNDC1	100	73.950	Mustela_putorius_furo
ENSTRUG00000023281	smndc1	100	73.950	ENSMLUG00000016007	SMNDC1	100	73.950	Myotis_lucifugus
ENSTRUG00000023281	smndc1	100	73.529	ENSNGAG00000006833	Smndc1	100	73.529	Nannospalax_galili
ENSTRUG00000023281	smndc1	100	83.193	ENSNBRG00000017089	smndc1	100	83.193	Neolamprologus_brichardi
ENSTRUG00000023281	smndc1	100	73.950	ENSNLEG00000015471	SMNDC1	100	73.950	Nomascus_leucogenys
ENSTRUG00000023281	smndc1	71	58.824	ENSMEUG00000010120	-	100	54.726	Notamacropus_eugenii
ENSTRUG00000023281	smndc1	100	73.950	ENSOPRG00000015348	SMNDC1	100	73.950	Ochotona_princeps
ENSTRUG00000023281	smndc1	100	52.521	ENSODEG00000007594	-	100	51.261	Octodon_degus
ENSTRUG00000023281	smndc1	100	83.193	ENSONIG00000000434	smndc1	100	83.193	Oreochromis_niloticus
ENSTRUG00000023281	smndc1	100	74.790	ENSOANG00000001598	SMNDC1	100	74.790	Ornithorhynchus_anatinus
ENSTRUG00000023281	smndc1	100	73.950	ENSOCUG00000008145	-	100	73.950	Oryctolagus_cuniculus
ENSTRUG00000023281	smndc1	100	55.462	ENSOCUG00000012274	-	100	57.143	Oryctolagus_cuniculus
ENSTRUG00000023281	smndc1	100	81.933	ENSORLG00000005934	smndc1	95	81.933	Oryzias_latipes
ENSTRUG00000023281	smndc1	100	81.933	ENSORLG00020008796	smndc1	95	81.933	Oryzias_latipes_hni
ENSTRUG00000023281	smndc1	100	81.513	ENSORLG00015013666	smndc1	100	81.513	Oryzias_latipes_hsok
ENSTRUG00000023281	smndc1	100	81.092	ENSOMEG00000007590	smndc1	100	81.092	Oryzias_melastigma
ENSTRUG00000023281	smndc1	100	73.950	ENSOGAG00000000571	SMNDC1	100	73.950	Otolemur_garnettii
ENSTRUG00000023281	smndc1	100	73.950	ENSOARG00000009500	SMNDC1	100	73.950	Ovis_aries
ENSTRUG00000023281	smndc1	100	73.950	ENSPPAG00000027815	SMNDC1	100	73.950	Pan_paniscus
ENSTRUG00000023281	smndc1	100	73.950	ENSPPRG00000013749	SMNDC1	100	73.950	Panthera_pardus
ENSTRUG00000023281	smndc1	100	73.950	ENSPTIG00000011451	SMNDC1	100	73.950	Panthera_tigris_altaica
ENSTRUG00000023281	smndc1	100	73.950	ENSPTRG00000002937	SMNDC1	100	73.950	Pan_troglodytes
ENSTRUG00000023281	smndc1	100	73.950	ENSPANG00000020805	-	100	73.950	Papio_anubis
ENSTRUG00000023281	smndc1	100	69.328	ENSPANG00000031346	-	100	69.328	Papio_anubis
ENSTRUG00000023281	smndc1	100	76.891	ENSPKIG00000017164	smndc1	100	78.661	Paramormyrops_kingsleyae
ENSTRUG00000023281	smndc1	100	74.790	ENSPSIG00000012257	SMNDC1	100	74.790	Pelodiscus_sinensis
ENSTRUG00000023281	smndc1	100	78.151	ENSPMGG00000015651	smndc1	100	78.151	Periophthalmus_magnuspinnatus
ENSTRUG00000023281	smndc1	100	73.950	ENSPEMG00000022058	Smndc1	100	73.950	Peromyscus_maniculatus_bairdii
ENSTRUG00000023281	smndc1	100	65.021	ENSPMAG00000007705	smndc1	100	65.021	Petromyzon_marinus
ENSTRUG00000023281	smndc1	100	74.370	ENSPCIG00000018419	SMNDC1	100	74.370	Phascolarctos_cinereus
ENSTRUG00000023281	smndc1	97	56.087	ENSPCIG00000009693	-	99	56.087	Phascolarctos_cinereus
ENSTRUG00000023281	smndc1	100	83.193	ENSPFOG00000017113	smndc1	100	83.193	Poecilia_formosa
ENSTRUG00000023281	smndc1	100	83.193	ENSPLAG00000010372	smndc1	100	83.193	Poecilia_latipinna
ENSTRUG00000023281	smndc1	100	83.613	ENSPMEG00000012288	smndc1	100	83.613	Poecilia_mexicana
ENSTRUG00000023281	smndc1	100	83.193	ENSPREG00000012279	smndc1	100	83.193	Poecilia_reticulata
ENSTRUG00000023281	smndc1	100	73.950	ENSPPYG00000002643	SMNDC1	100	73.950	Pongo_abelii
ENSTRUG00000023281	smndc1	81	68.912	ENSPCAG00000016183	SMNDC1	100	68.912	Procavia_capensis
ENSTRUG00000023281	smndc1	100	73.529	ENSPCOG00000024343	SMNDC1	100	73.529	Propithecus_coquereli
ENSTRUG00000023281	smndc1	100	58.824	ENSPVAG00000004368	SMNDC1	100	58.824	Pteropus_vampyrus
ENSTRUG00000023281	smndc1	83	83.838	ENSPNYG00000024093	smndc1	86	83.838	Pundamilia_nyererei
ENSTRUG00000023281	smndc1	100	75.630	ENSPNAG00000025285	smndc1	100	75.630	Pygocentrus_nattereri
ENSTRUG00000023281	smndc1	100	73.950	ENSRNOG00000014833	Smndc1	100	73.950	Rattus_norvegicus
ENSTRUG00000023281	smndc1	100	60.504	ENSRBIG00000032452	-	100	60.504	Rhinopithecus_bieti
ENSTRUG00000023281	smndc1	100	73.950	ENSRBIG00000000224	-	100	73.950	Rhinopithecus_bieti
ENSTRUG00000023281	smndc1	100	73.950	ENSRROG00000044992	-	100	73.950	Rhinopithecus_roxellana
ENSTRUG00000023281	smndc1	100	60.504	ENSRROG00000039125	-	100	60.504	Rhinopithecus_roxellana
ENSTRUG00000023281	smndc1	100	73.950	ENSSBOG00000026789	SMNDC1	100	73.950	Saimiri_boliviensis_boliviensis
ENSTRUG00000023281	smndc1	100	74.370	ENSSHAG00000015189	SMNDC1	100	74.370	Sarcophilus_harrisii
ENSTRUG00000023281	smndc1	100	76.891	ENSSFOG00015008311	smndc1	100	76.891	Scleropages_formosus
ENSTRUG00000023281	smndc1	100	85.294	ENSSMAG00000020118	smndc1	100	85.294	Scophthalmus_maximus
ENSTRUG00000023281	smndc1	100	84.874	ENSSDUG00000015330	smndc1	100	84.874	Seriola_dumerili
ENSTRUG00000023281	smndc1	100	85.294	ENSSLDG00000017325	smndc1	100	85.294	Seriola_lalandi_dorsalis
ENSTRUG00000023281	smndc1	100	73.950	ENSSARG00000006063	SMNDC1	100	73.950	Sorex_araneus
ENSTRUG00000023281	smndc1	100	73.529	ENSSPUG00000004574	SMNDC1	100	73.529	Sphenodon_punctatus
ENSTRUG00000023281	smndc1	100	84.454	ENSSPAG00000000338	smndc1	100	84.454	Stegastes_partitus
ENSTRUG00000023281	smndc1	100	73.950	ENSSSCG00000030507	SMNDC1	100	73.950	Sus_scrofa
ENSTRUG00000023281	smndc1	100	73.950	ENSTGUG00000010599	SMNDC1	100	73.950	Taeniopygia_guttata
ENSTRUG00000023281	smndc1	100	93.697	ENSTNIG00000013331	smndc1	100	93.697	Tetraodon_nigroviridis
ENSTRUG00000023281	smndc1	100	73.950	ENSTBEG00000014337	SMNDC1	100	73.950	Tupaia_belangeri
ENSTRUG00000023281	smndc1	100	73.950	ENSUAMG00000008142	SMNDC1	100	73.950	Ursus_americanus
ENSTRUG00000023281	smndc1	100	73.950	ENSUMAG00000023722	SMNDC1	100	73.950	Ursus_maritimus
ENSTRUG00000023281	smndc1	83	73.232	ENSVPAG00000003402	SMNDC1	100	73.232	Vicugna_pacos
ENSTRUG00000023281	smndc1	100	73.950	ENSVVUG00000007820	SMNDC1	100	73.950	Vulpes_vulpes
ENSTRUG00000023281	smndc1	60	59.859	ENSXETG00000015415	SMNDC1	100	59.859	Xenopus_tropicalis
ENSTRUG00000023281	smndc1	100	82.773	ENSXCOG00000009159	smndc1	100	82.773	Xiphophorus_couchianus
ENSTRUG00000023281	smndc1	100	82.773	ENSXMAG00000012755	smndc1	100	82.773	Xiphophorus_maculatus