EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTRUG00000023664 (Gene tree)
Gene ID
101071360
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Takifugu_rubripes
Status
putative
Strand
Plus strand
Length
12354 bases
Position
chr10:488453-500806
Accession
101071360
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTRUP00000016091RRM_1PF00076.221.9e-1711
ENSTRUP00000048828RRM_1PF00076.222.9e-1711
ENSTRUP00000053494RRM_1PF00076.222.9e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTRUT00000056663-4772-ENSTRUP00000048828284 (aa)-UPI000065FDDD
ENSTRUT00000052051-4616XM_003967808ENSTRUP00000053494284 (aa)XP_003967857UPI000065FDDD
ENSTRUT00000016163-1527XM_003967807ENSTRUP00000016091232 (aa)XP_003967856H2SUK4
Gene Model
Click here to download ENSTRUG00000023664's gene model file
Pathways
Pathway IDPathway NameSource
tru03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000023664's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTRUG00000023664pabpn16362.252ENSTRUG00000024725PABPN1L8354.327
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTRUG00000023664pabpn18683.010ENSG00000100836PABPN19482.738Homo_sapiens
ENSTRUG00000023664pabpn19972.961ENSG00000258643BCL2L2-PABPN17072.961Homo_sapiens
ENSTRUG00000023664pabpn110097.887ENSAPOG00000016425pabpn110097.887Acanthochromis_polyacanthus
ENSTRUG00000023664pabpn18184.737ENSAMEG00000007048BCL2L2-PABPN110084.737Ailuropoda_melanoleuca
ENSTRUG00000023664pabpn110095.804ENSACIG00000021744pabpn110096.591Amphilophus_citrinellus
ENSTRUG00000023664pabpn110097.845ENSAOCG00000015805pabpn110097.845Amphiprion_ocellaris
ENSTRUG00000023664pabpn110097.845ENSAPEG00000009623pabpn110097.845Amphiprion_percula
ENSTRUG00000023664pabpn110098.276ENSATEG00000020531pabpn110098.276Anabas_testudineus
ENSTRUG00000023664pabpn18186.842ENSACAG00000006185-8173.750Anolis_carolinensis
ENSTRUG00000023664pabpn18484.343ENSANAG00000024513-8476.446Aotus_nancymaae
ENSTRUG00000023664pabpn110095.470ENSACLG00000016374pabpn110095.470Astatotilapia_calliptera
ENSTRUG00000023664pabpn110095.708ENSAMXG00000000452pabpn110095.708Astyanax_mexicanus
ENSTRUG00000023664pabpn18484.343ENSBTAG00000006884PABPN18670.076Bos_taurus
ENSTRUG00000023664pabpn18477.041ENSBTAG00000050594-7680.303Bos_taurus
ENSTRUG00000023664pabpn18183.333ENSBTAG00000053753-7183.333Bos_taurus
ENSTRUG00000023664pabpn16258.904WBGene00003904pabp-28655.000Caenorhabditis_elegans
ENSTRUG00000023664pabpn17180.952ENSCJAG00000004407-8480.952Callithrix_jacchus
ENSTRUG00000023664pabpn19976.395ENSCJAG00000007960-8476.824Callithrix_jacchus
ENSTRUG00000023664pabpn18683.010ENSCAFG00000011482PABPN18671.591Canis_familiaris
ENSTRUG00000023664pabpn18683.010ENSCAFG00020007298-8671.212Canis_lupus_dingo
ENSTRUG00000023664pabpn18683.010ENSCAFG00020006651-8671.212Canis_lupus_dingo
ENSTRUG00000023664pabpn18683.010ENSCHIG00000012184PABPN18671.212Capra_hircus
ENSTRUG00000023664pabpn19972.961ENSTSYG00000033996BCL2L2-PABPN19482.738Carlito_syrichta
ENSTRUG00000023664pabpn15982.014ENSCAPG00000009461-9982.014Cavia_aperea
ENSTRUG00000023664pabpn18682.524ENSCPOG00000025574PABPN16882.297Cavia_porcellus
ENSTRUG00000023664pabpn19976.395ENSCCAG00000033954BCL2L2-PABPN18476.824Cebus_capucinus
ENSTRUG00000023664pabpn19976.395ENSCATG00000038536BCL2L2-PABPN18476.824Cercocebus_atys
ENSTRUG00000023664pabpn16582.119ENSCLAG00000012423PABPN15682.119Chinchilla_lanigera
ENSTRUG00000023664pabpn18681.553ENSCSAG00000016036PABPN18670.076Chlorocebus_sabaeus
ENSTRUG00000023664pabpn18973.333ENSCHOG00000004798BCL2L2-PABPN19271.364Choloepus_hoffmanni
ENSTRUG00000023664pabpn17185.714ENSCPBG00000026060-9485.714Chrysemys_picta_bellii
ENSTRUG00000023664pabpn19061.611ENSCING00000012468-8961.137Ciona_intestinalis
ENSTRUG00000023664pabpn17662.921ENSCSAVG00000002001-9360.479Ciona_savignyi
ENSTRUG00000023664pabpn18572.222ENSCANG00000030980-8765.126Colobus_angolensis_palliatus
ENSTRUG00000023664pabpn19972.961ENSCANG00000009750BCL2L2-PABPN19482.738Colobus_angolensis_palliatus
ENSTRUG00000023664pabpn18683.010ENSCGRG00001019696Pabpn19482.738Cricetulus_griseus_chok1gshd
ENSTRUG00000023664pabpn16392.517ENSCGRG00000011102Pabpn19192.517Cricetulus_griseus_crigri
ENSTRUG00000023664pabpn110096.121ENSCSEG00000008774pabpn110096.121Cynoglossus_semilaevis
ENSTRUG00000023664pabpn110092.308ENSCVAG00000003152pabpn110093.590Cyprinodon_variegatus
ENSTRUG00000023664pabpn110095.690ENSDARG00000045373pabpn110095.690Danio_rerio
ENSTRUG00000023664pabpn18153.476ENSDARG00000087996pabpn1l8659.184Danio_rerio
ENSTRUG00000023664pabpn18683.010ENSDNOG00000023682PABPN18671.212Dasypus_novemcinctus
ENSTRUG00000023664pabpn18682.039ENSDORG00000028966-8670.076Dipodomys_ordii
ENSTRUG00000023664pabpn15683.459ENSDORG00000023928-8582.787Dipodomys_ordii
ENSTRUG00000023664pabpn110057.983FBgn0005648Pabp29758.333Drosophila_melanogaster
ENSTRUG00000023664pabpn19971.552ENSEBUG00000002322pabpn19971.552Eptatretus_burgeri
ENSTRUG00000023664pabpn18683.010ENSEASG00005011716PABPN18671.212Equus_asinus_asinus
ENSTRUG00000023664pabpn18582.353ENSECAG00000011652PABPN18570.472Equus_caballus
ENSTRUG00000023664pabpn18681.068ENSEEUG00000012973-6979.310Erinaceus_europaeus
ENSTRUG00000023664pabpn110094.093ENSELUG00000022654pabpn110094.093Esox_lucius
ENSTRUG00000023664pabpn18683.010ENSFCAG00000031922PABPN18671.212Felis_catus
ENSTRUG00000023664pabpn17182.738ENSFDAG00000018381BCL2L2-PABPN19482.738Fukomys_damarensis
ENSTRUG00000023664pabpn110093.966ENSFHEG00000007215pabpn110093.966Fundulus_heteroclitus
ENSTRUG00000023664pabpn110091.228ENSGMOG00000003922pabpn110094.035Gadus_morhua
ENSTRUG00000023664pabpn18383.838ENSGALG00000052930-6183.886Gallus_gallus
ENSTRUG00000023664pabpn110096.154ENSGAFG00000017099pabpn110096.154Gambusia_affinis
ENSTRUG00000023664pabpn110096.479ENSGACG00000002167pabpn110096.479Gasterosteus_aculeatus
ENSTRUG00000023664pabpn19976.395ENSGGOG00000022683-8476.824Gorilla_gorilla
ENSTRUG00000023664pabpn19466.667ENSGGOG00000025919-10066.667Gorilla_gorilla
ENSTRUG00000023664pabpn18970.673ENSGGOG00000039675-9166.667Gorilla_gorilla
ENSTRUG00000023664pabpn110097.414ENSHBUG00000019523pabpn110097.414Haplochromis_burtoni
ENSTRUG00000023664pabpn18770.531ENSHGLG00000018588-7075.000Heterocephalus_glaber_female
ENSTRUG00000023664pabpn18682.524ENSHGLG00000002927-9291.837Heterocephalus_glaber_female
ENSTRUG00000023664pabpn17164.671ENSHGLG00000009842-9364.671Heterocephalus_glaber_female
ENSTRUG00000023664pabpn18770.531ENSHGLG00100015565-8765.939Heterocephalus_glaber_male
ENSTRUG00000023664pabpn17171.257ENSHGLG00100018935-9473.837Heterocephalus_glaber_male
ENSTRUG00000023664pabpn19471.946ENSHGLG00100006673-9291.837Heterocephalus_glaber_male
ENSTRUG00000023664pabpn110096.983ENSHCOG00000004655pabpn110096.983Hippocampus_comes
ENSTRUG00000023664pabpn110087.931ENSIPUG00000000180-9987.931Ictalurus_punctatus
ENSTRUG00000023664pabpn110096.121ENSIPUG00000008085PABPN110096.121Ictalurus_punctatus
ENSTRUG00000023664pabpn17182.738ENSSTOG00000029847BCL2L2-PABPN19482.738Ictidomys_tridecemlineatus
ENSTRUG00000023664pabpn17182.738ENSJJAG00000023507Gm205219482.738Jaculus_jaculus
ENSTRUG00000023664pabpn110096.140ENSKMAG00000018748pabpn110096.140Kryptolebias_marmoratus
ENSTRUG00000023664pabpn110098.276ENSLBEG00000027266pabpn110098.276Labrus_bergylta
ENSTRUG00000023664pabpn17589.326ENSLACG00000000646pabpn18585.567Latimeria_chalumnae
ENSTRUG00000023664pabpn19066.822ENSLOCG00000004694pabpn1l9966.822Lepisosteus_oculatus
ENSTRUG00000023664pabpn110091.228ENSLOCG00000000796pabpn110091.579Lepisosteus_oculatus
ENSTRUG00000023664pabpn16582.781ENSLAFG00000031227-9982.781Loxodonta_africana
ENSTRUG00000023664pabpn19972.961ENSMFAG00000032183BCL2L2-PABPN19482.738Macaca_fascicularis
ENSTRUG00000023664pabpn16175.352ENSMFAG00000031355-9975.352Macaca_fascicularis
ENSTRUG00000023664pabpn19972.961ENSMMUG00000014747BCL2L2-PABPN110082.313Macaca_mulatta
ENSTRUG00000023664pabpn18668.293ENSMMUG00000048382-8958.364Macaca_mulatta
ENSTRUG00000023664pabpn17968.984ENSMNEG00000035750-9975.352Macaca_nemestrina
ENSTRUG00000023664pabpn19976.395ENSMNEG00000045065BCL2L2-PABPN18476.824Macaca_nemestrina
ENSTRUG00000023664pabpn19972.961ENSMLEG00000043862BCL2L2-PABPN19482.738Mandrillus_leucophaeus
ENSTRUG00000023664pabpn17267.066ENSMLEG00000034623-9973.239Mandrillus_leucophaeus
ENSTRUG00000023664pabpn110096.479ENSMAMG00000007979pabpn110096.479Mastacembelus_armatus
ENSTRUG00000023664pabpn110097.183ENSMZEG00005011904pabpn110097.183Maylandia_zebra
ENSTRUG00000023664pabpn19973.391ENSMAUG00000007383Gm205218771.103Mesocricetus_auratus
ENSTRUG00000023664pabpn19976.824ENSMICG00000010002BCL2L2-PABPN18477.542Microcebus_murinus
ENSTRUG00000023664pabpn19972.961ENSMOCG00000018557Gm205219092.517Microtus_ochrogaster
ENSTRUG00000023664pabpn110097.845ENSMMOG00000005405pabpn110097.845Mola_mola
ENSTRUG00000023664pabpn18579.703ENSMODG00000004535-8270.238Monodelphis_domestica
ENSTRUG00000023664pabpn110097.535ENSMALG00000019612pabpn110097.535Monopterus_albus
ENSTRUG00000023664pabpn18682.039MGP_CAROLIEiJ_G0019277Pabpn19091.837Mus_caroli
ENSTRUG00000023664pabpn19972.532MGP_CAROLIEiJ_G0019276Gm205217072.532Mus_caroli
ENSTRUG00000023664pabpn18682.524ENSMUSG00000022194Pabpn19091.837Mus_musculus
ENSTRUG00000023664pabpn19972.961ENSMUSG00000092232Gm205217072.961Mus_musculus
ENSTRUG00000023664pabpn18682.524MGP_PahariEiJ_G0030295Pabpn110097.619Mus_pahari
ENSTRUG00000023664pabpn19972.961MGP_PahariEiJ_G0030294Gm205217072.961Mus_pahari
ENSTRUG00000023664pabpn18682.524MGP_SPRETEiJ_G0020166Pabpn19091.837Mus_spretus
ENSTRUG00000023664pabpn19972.961MGP_SPRETEiJ_G0020165Gm205217072.961Mus_spretus
ENSTRUG00000023664pabpn16682.692ENSMPUG00000006775-9282.692Mustela_putorius_furo
ENSTRUG00000023664pabpn18183.684ENSMLUG00000003800-10083.684Myotis_lucifugus
ENSTRUG00000023664pabpn18481.818ENSMLUG00000028677-8573.729Myotis_lucifugus
ENSTRUG00000023664pabpn18880.000ENSMLUG00000012452-8271.429Myotis_lucifugus
ENSTRUG00000023664pabpn19973.391ENSNGAG00000019529Gm205217073.391Nannospalax_galili
ENSTRUG00000023664pabpn110097.535ENSNBRG00000023955pabpn110097.535Neolamprologus_brichardi
ENSTRUG00000023664pabpn18670.244ENSNLEG00000030598-7771.579Nomascus_leucogenys
ENSTRUG00000023664pabpn16460.811ENSNLEG00000035292-9960.811Nomascus_leucogenys
ENSTRUG00000023664pabpn19972.961ENSNLEG00000015007-7482.775Nomascus_leucogenys
ENSTRUG00000023664pabpn17673.184ENSODEG00000011555-8972.024Octodon_degus
ENSTRUG00000023664pabpn18675.369ENSODEG00000003739-8863.424Octodon_degus
ENSTRUG00000023664pabpn19972.532ENSODEG00000002083BCL2L2-PABPN16882.297Octodon_degus
ENSTRUG00000023664pabpn110097.535ENSONIG00000008112pabpn110097.535Oreochromis_niloticus
ENSTRUG00000023664pabpn16384.354ENSOANG00000009218-10084.354Ornithorhynchus_anatinus
ENSTRUG00000023664pabpn18682.524ENSOCUG00000016174PABPN19570.722Oryctolagus_cuniculus
ENSTRUG00000023664pabpn110096.479ENSORLG00000027900pabpn110096.479Oryzias_latipes
ENSTRUG00000023664pabpn19996.507ENSORLG00020004681pabpn110093.836Oryzias_latipes_hni
ENSTRUG00000023664pabpn110096.983ENSORLG00015000018pabpn110096.983Oryzias_latipes_hsok
ENSTRUG00000023664pabpn110097.183ENSOMEG00000016618pabpn110097.183Oryzias_melastigma
ENSTRUG00000023664pabpn18683.010ENSOGAG00000008710PABPN18671.212Otolemur_garnettii
ENSTRUG00000023664pabpn19972.961ENSOARG00000019336BCL2L2-PABPN16472.961Ovis_aries
ENSTRUG00000023664pabpn19972.961ENSPPAG00000028984BCL2L2-PABPN19282.692Pan_paniscus
ENSTRUG00000023664pabpn17168.675ENSPPAG00000039421-9368.675Pan_paniscus
ENSTRUG00000023664pabpn18683.010ENSPPRG00000010567PABPN18671.212Panthera_pardus
ENSTRUG00000023664pabpn17182.738ENSPTIG00000001063BCL2L2-PABPN19482.738Panthera_tigris_altaica
ENSTRUG00000023664pabpn110064.103ENSPTRG00000047273-9361.508Pan_troglodytes
ENSTRUG00000023664pabpn19976.395ENSPTRG00000006167BCL2L28476.824Pan_troglodytes
ENSTRUG00000023664pabpn19976.395ENSPANG00000021100BCL2L2-PABPN18476.824Papio_anubis
ENSTRUG00000023664pabpn18469.697ENSPANG00000023326-9976.056Papio_anubis
ENSTRUG00000023664pabpn17169.512ENSPKIG00000008340pabpn1l8667.039Paramormyrops_kingsleyae
ENSTRUG00000023664pabpn110090.987ENSPKIG00000018052pabpn110094.421Paramormyrops_kingsleyae
ENSTRUG00000023664pabpn110094.718ENSPKIG00000008144-10094.718Paramormyrops_kingsleyae
ENSTRUG00000023664pabpn15778.195ENSPSIG00000011959-9478.195Pelodiscus_sinensis
ENSTRUG00000023664pabpn110092.254ENSPMGG00000022027pabpn110092.254Periophthalmus_magnuspinnatus
ENSTRUG00000023664pabpn19973.391ENSPEMG00000008332Gm205218992.517Peromyscus_maniculatus_bairdii
ENSTRUG00000023664pabpn17976.344ENSPMAG00000006212pabpn19966.667Petromyzon_marinus
ENSTRUG00000023664pabpn18680.488ENSPCIG00000027751-8670.833Phascolarctos_cinereus
ENSTRUG00000023664pabpn110095.726ENSPFOG00000010351pabpn19995.726Poecilia_formosa
ENSTRUG00000023664pabpn110095.804ENSPLAG00000022696pabpn110095.804Poecilia_latipinna
ENSTRUG00000023664pabpn110095.726ENSPMEG00000020856pabpn110095.726Poecilia_mexicana
ENSTRUG00000023664pabpn110096.154ENSPREG00000011278pabpn110096.154Poecilia_reticulata
ENSTRUG00000023664pabpn18182.990ENSPPYG00000005663PABPN18970.635Pongo_abelii
ENSTRUG00000023664pabpn17969.792ENSPCAG00000005902PABPN18560.159Procavia_capensis
ENSTRUG00000023664pabpn19976.824ENSPCOG00000028047BCL2L2-PABPN18477.542Propithecus_coquereli
ENSTRUG00000023664pabpn18881.340ENSPVAG00000005270PABPN18669.962Pteropus_vampyrus
ENSTRUG00000023664pabpn110097.414ENSPNYG00000013182pabpn110097.414Pundamilia_nyererei
ENSTRUG00000023664pabpn18861.836ENSPNAG00000021666pabpn1l9565.128Pygocentrus_nattereri
ENSTRUG00000023664pabpn110096.552ENSPNAG00000023526pabpn110096.552Pygocentrus_nattereri
ENSTRUG00000023664pabpn18683.010ENSRNOG00000042195Pabpn18571.374Rattus_norvegicus
ENSTRUG00000023664pabpn18870.813ENSRBIG00000042811-9566.960Rhinopithecus_bieti
ENSTRUG00000023664pabpn19472.398ENSRBIG00000040762BCL2L2-PABPN16872.398Rhinopithecus_bieti
ENSTRUG00000023664pabpn18972.642ENSRBIG00000039547-8267.411Rhinopithecus_bieti
ENSTRUG00000023664pabpn19472.398ENSRROG00000045535BCL2L2-PABPN19482.738Rhinopithecus_roxellana
ENSTRUG00000023664pabpn18867.299ENSRROG00000036409-7064.192Rhinopithecus_roxellana
ENSTRUG00000023664pabpn19467.857ENSRROG00000040409-8267.857Rhinopithecus_roxellana
ENSTRUG00000023664pabpn19969.106ENSSBOG00000026930BCL2L2-PABPN19282.692Saimiri_boliviensis_boliviensis
ENSTRUG00000023664pabpn18182.011ENSSHAG00000014841-8784.211Sarcophilus_harrisii
ENSTRUG00000023664pabpn19961.765ENSSHAG00000007707-9958.403Sarcophilus_harrisii
ENSTRUG00000023664pabpn110090.129ENSSFOG00015012565pabpn110090.129Scleropages_formosus
ENSTRUG00000023664pabpn16173.944ENSSFOG00015015833pabpn1l8466.120Scleropages_formosus
ENSTRUG00000023664pabpn110095.690ENSSFOG00015014718pabpn110095.690Scleropages_formosus
ENSTRUG00000023664pabpn110097.845ENSSMAG00000020157pabpn110097.845Scophthalmus_maximus
ENSTRUG00000023664pabpn110097.887ENSSDUG00000020582pabpn110097.887Seriola_dumerili
ENSTRUG00000023664pabpn110098.276ENSSLDG00000007118pabpn110098.276Seriola_lalandi_dorsalis
ENSTRUG00000023664pabpn17185.714ENSSPUG00000018308-9485.714Sphenodon_punctatus
ENSTRUG00000023664pabpn110096.842ENSSPAG00000021658pabpn110096.842Stegastes_partitus
ENSTRUG00000023664pabpn19972.961ENSSSCG00000002023PABPN18671.212Sus_scrofa
ENSTRUG00000023664pabpn19263.426ENSSSCG00000034805-7959.524Sus_scrofa
ENSTRUG00000023664pabpn19294.419ENSTNIG00000005369pabpn19399.005Tetraodon_nigroviridis
ENSTRUG00000023664pabpn18683.010ENSUAMG00000024460PABPN16882.775Ursus_americanus
ENSTRUG00000023664pabpn19972.961ENSUMAG00000014288BCL2L2-PABPN17072.961Ursus_maritimus
ENSTRUG00000023664pabpn19972.961ENSVVUG00000019912BCL2L2-PABPN17683.505Vulpes_vulpes
ENSTRUG00000023664pabpn18487.245ENSXETG00000014597pabpn17383.796Xenopus_tropicalis
ENSTRUG00000023664pabpn17584.571ENSXCOG00000005158pabpn19884.571Xiphophorus_couchianus
ENSTRUG00000023664pabpn110096.581ENSXMAG00000006196pabpn110096.581Xiphophorus_maculatus

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