EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000023880 (Gene tree)
Gene ID: 101071986
Gene Symbol: -
Alias: -
Full Name: nucleolin-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 4258 bases
Position: chr22:9725598-9729855
Accession: 101071986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000054414	RRM_1	PF00076.22	9.3e-41	1	3
ENSTRUP00000054414	RRM_1	PF00076.22	9.3e-41	2	3
ENSTRUP00000054414	RRM_1	PF00076.22	9.3e-41	3	3
ENSTRUP00000055208	RRM_1	PF00076.22	1.1e-40	1	3
ENSTRUP00000055208	RRM_1	PF00076.22	1.1e-40	2	3
ENSTRUP00000055208	RRM_1	PF00076.22	1.1e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000049126	-	1449	XM_003975777	ENSTRUP00000054414	482 (aa)	XP_003975826	UPI0005D17BB2
ENSTRUT00000056519	-	2073	-	ENSTRUP00000055208	497 (aa)	-	-

Gene Model

Click here to download ENSTRUG00000023880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000023880's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000023880	-	76	40.108	ENSTRUG00000008185	ncl	54	39.737

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000023880	-	79	43.455	ENSACIG00000021941	-	85	43.455	Amphilophus_citrinellus
ENSTRUG00000023880	-	78	45.910	ENSACLG00000009613	-	90	46.277	Astatotilapia_calliptera
ENSTRUG00000023880	-	79	50.643	ENSCSEG00000017388	-	73	50.900	Cynoglossus_semilaevis
ENSTRUG00000023880	-	82	49.272	ENSFHEG00000017265	-	88	49.272	Fundulus_heteroclitus
ENSTRUG00000023880	-	84	40.838	ENSGMOG00000017831	-	96	41.361	Gadus_morhua
ENSTRUG00000023880	-	94	44.813	ENSGAFG00000018408	-	98	45.228	Gambusia_affinis
ENSTRUG00000023880	-	78	46.174	ENSHBUG00000006683	-	91	46.174	Haplochromis_burtoni
ENSTRUG00000023880	-	79	48.593	ENSHCOG00000020361	-	91	48.593	Hippocampus_comes
ENSTRUG00000023880	-	80	50.904	ENSKMAG00000003154	-	94	50.904	Kryptolebias_marmoratus
ENSTRUG00000023880	-	78	46.438	ENSMZEG00005005300	-	91	46.438	Maylandia_zebra
ENSTRUG00000023880	-	79	55.469	ENSMMOG00000018095	-	89	55.469	Mola_mola
ENSTRUG00000023880	-	86	46.602	ENSMALG00000006207	-	75	46.602	Monopterus_albus
ENSTRUG00000023880	-	78	43.617	ENSPMGG00000013705	-	91	45.745	Periophthalmus_magnuspinnatus
ENSTRUG00000023880	-	87	49.306	ENSPFOG00000016767	-	97	47.856	Poecilia_formosa
ENSTRUG00000023880	-	88	48.741	ENSPLAG00000000597	-	88	48.307	Poecilia_latipinna
ENSTRUG00000023880	-	94	45.021	ENSPMEG00000004046	-	98	45.021	Poecilia_mexicana
ENSTRUG00000023880	-	90	46.004	ENSPREG00000007170	-	93	45.263	Poecilia_reticulata
ENSTRUG00000023880	-	78	47.230	ENSPNYG00000000391	-	91	47.230	Pundamilia_nyererei
ENSTRUG00000023880	-	94	44.191	ENSXMAG00000004403	-	98	44.606	Xiphophorus_maculatus