EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000024220 (Gene tree)
Gene ID: 101069876
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 5149 bases
Position: chrHE592600.1:8524-13672
Accession: 101069876
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000053849	zf-CCCH	PF00642.24	5.8e-20	1	1
ENSTRUP00000053849	zf-CCHC	PF00098.23	4.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000054785	-	3978	XM_003978957	ENSTRUP00000053849	263 (aa)	XP_003979006	UPI000001B9F3

Gene Model

Click here to download ENSTRUG00000024220's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000024220's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000024220	cpsf4	100	81.111	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSTRUG00000024220	cpsf4	67	79.661	ENSAPOG00000004921	cpsf4	100	79.661	Acanthochromis_polyacanthus
ENSTRUG00000024220	cpsf4	100	80.952	ENSAMEG00000006252	CPSF4	100	80.952	Ailuropoda_melanoleuca
ENSTRUG00000024220	cpsf4	100	83.650	ENSACIG00000009248	cpsf4	100	83.650	Amphilophus_citrinellus
ENSTRUG00000024220	cpsf4	100	87.925	ENSAOCG00000019616	cpsf4	100	87.925	Amphiprion_ocellaris
ENSTRUG00000024220	cpsf4	100	87.925	ENSAPEG00000011679	cpsf4	100	87.925	Amphiprion_percula
ENSTRUG00000024220	cpsf4	100	88.390	ENSATEG00000007010	cpsf4	100	88.390	Anabas_testudineus
ENSTRUG00000024220	cpsf4	100	79.336	ENSACAG00000012941	CPSF4	89	79.336	Anolis_carolinensis
ENSTRUG00000024220	cpsf4	100	81.111	ENSANAG00000021360	CPSF4	100	81.111	Aotus_nancymaae
ENSTRUG00000024220	cpsf4	100	88.346	ENSACLG00000010374	cpsf4	100	88.346	Astatotilapia_calliptera
ENSTRUG00000024220	cpsf4	100	81.852	ENSAMXG00000031647	cpsf4	100	83.333	Astyanax_mexicanus
ENSTRUG00000024220	cpsf4	100	78.707	ENSBTAG00000002090	CPSF4	100	78.707	Bos_taurus
ENSTRUG00000024220	cpsf4	100	81.111	ENSCJAG00000015826	CPSF4	100	81.111	Callithrix_jacchus
ENSTRUG00000024220	cpsf4	100	80.952	ENSCAFG00000015036	CPSF4	99	86.228	Canis_familiaris
ENSTRUG00000024220	cpsf4	100	76.190	ENSCAFG00020014462	CPSF4	100	76.190	Canis_lupus_dingo
ENSTRUG00000024220	cpsf4	100	80.741	ENSCHIG00000014313	CPSF4	100	80.741	Capra_hircus
ENSTRUG00000024220	cpsf4	100	71.212	ENSTSYG00000014604	-	100	71.212	Carlito_syrichta
ENSTRUG00000024220	cpsf4	100	78.707	ENSTSYG00000005712	-	100	78.707	Carlito_syrichta
ENSTRUG00000024220	cpsf4	89	73.191	ENSTSYG00000008195	-	99	73.361	Carlito_syrichta
ENSTRUG00000024220	cpsf4	81	79.464	ENSCAPG00000013881	CPSF4	87	79.464	Cavia_aperea
ENSTRUG00000024220	cpsf4	100	79.087	ENSCPOG00000001783	CPSF4	100	79.087	Cavia_porcellus
ENSTRUG00000024220	cpsf4	100	81.111	ENSCCAG00000028291	CPSF4	100	81.111	Cebus_capucinus
ENSTRUG00000024220	cpsf4	100	81.111	ENSCATG00000038440	CPSF4	100	81.111	Cercocebus_atys
ENSTRUG00000024220	cpsf4	100	81.319	ENSCLAG00000007050	CPSF4	100	81.319	Chinchilla_lanigera
ENSTRUG00000024220	cpsf4	100	81.111	ENSCSAG00000017795	CPSF4	100	81.111	Chlorocebus_sabaeus
ENSTRUG00000024220	cpsf4	63	77.108	ENSCPBG00000010269	-	100	77.108	Chrysemys_picta_bellii
ENSTRUG00000024220	cpsf4	80	80.734	ENSCPBG00000020869	CPSF4	100	80.734	Chrysemys_picta_bellii
ENSTRUG00000024220	cpsf4	97	55.118	ENSCING00000021080	-	97	55.118	Ciona_intestinalis
ENSTRUG00000024220	cpsf4	96	54.804	ENSCSAVG00000011469	-	97	54.804	Ciona_savignyi
ENSTRUG00000024220	cpsf4	100	81.111	ENSCANG00000019384	CPSF4	100	81.111	Colobus_angolensis_palliatus
ENSTRUG00000024220	cpsf4	100	79.087	ENSCGRG00001024184	Cpsf4	100	79.087	Cricetulus_griseus_chok1gshd
ENSTRUG00000024220	cpsf4	100	80.952	ENSCGRG00000013892	Cpsf4	100	80.952	Cricetulus_griseus_crigri
ENSTRUG00000024220	cpsf4	100	87.170	ENSCSEG00000019055	cpsf4	100	87.170	Cynoglossus_semilaevis
ENSTRUG00000024220	cpsf4	100	86.792	ENSCVAG00000016528	cpsf4	100	86.792	Cyprinodon_variegatus
ENSTRUG00000024220	cpsf4	100	82.657	ENSDARG00000020217	cpsf4	100	82.657	Danio_rerio
ENSTRUG00000024220	cpsf4	100	81.111	ENSDNOG00000006344	CPSF4	100	81.111	Dasypus_novemcinctus
ENSTRUG00000024220	cpsf4	80	79.638	ENSDORG00000000742	Cpsf4	100	79.638	Dipodomys_ordii
ENSTRUG00000024220	cpsf4	100	54.452	FBgn0015621	Clp	99	54.452	Drosophila_melanogaster
ENSTRUG00000024220	cpsf4	71	92.727	ENSETEG00000002608	CPSF4	70	92.727	Echinops_telfairi
ENSTRUG00000024220	cpsf4	99	67.681	ENSEBUG00000012552	cpsf4	98	67.681	Eptatretus_burgeri
ENSTRUG00000024220	cpsf4	100	79.087	ENSEASG00005002487	CPSF4	100	79.087	Equus_asinus_asinus
ENSTRUG00000024220	cpsf4	100	80.952	ENSECAG00000007525	CPSF4	100	80.952	Equus_caballus
ENSTRUG00000024220	cpsf4	62	92.537	ENSEEUG00000002158	CPSF4	73	92.537	Erinaceus_europaeus
ENSTRUG00000024220	cpsf4	100	82.721	ENSELUG00000011481	cpsf4	100	82.721	Esox_lucius
ENSTRUG00000024220	cpsf4	100	80.952	ENSFCAG00000015070	CPSF4	100	80.952	Felis_catus
ENSTRUG00000024220	cpsf4	63	54.651	ENSFALG00000012906	-	100	54.651	Ficedula_albicollis
ENSTRUG00000024220	cpsf4	100	77.567	ENSFALG00000013799	CPSF4	100	77.567	Ficedula_albicollis
ENSTRUG00000024220	cpsf4	90	79.757	ENSFDAG00000014092	CPSF4	100	79.757	Fukomys_damarensis
ENSTRUG00000024220	cpsf4	100	87.547	ENSFHEG00000010880	cpsf4	100	87.547	Fundulus_heteroclitus
ENSTRUG00000024220	cpsf4	100	80.443	ENSGMOG00000002330	cpsf4	100	80.443	Gadus_morhua
ENSTRUG00000024220	cpsf4	100	77.567	ENSGALG00000004714	CPSF4	100	77.567	Gallus_gallus
ENSTRUG00000024220	cpsf4	99	36.667	ENSGALG00000004441	-	98	36.667	Gallus_gallus
ENSTRUG00000024220	cpsf4	100	86.415	ENSGAFG00000010580	cpsf4	100	86.415	Gambusia_affinis
ENSTRUG00000024220	cpsf4	100	83.955	ENSGACG00000007792	cpsf4	100	83.955	Gasterosteus_aculeatus
ENSTRUG00000024220	cpsf4	69	74.176	ENSGAGG00000020579	-	100	74.176	Gopherus_agassizii
ENSTRUG00000024220	cpsf4	100	81.181	ENSGAGG00000021835	CPSF4	100	81.181	Gopherus_agassizii
ENSTRUG00000024220	cpsf4	100	81.111	ENSGGOG00000015131	CPSF4	100	81.111	Gorilla_gorilla
ENSTRUG00000024220	cpsf4	100	88.346	ENSHBUG00000013699	cpsf4	100	88.346	Haplochromis_burtoni
ENSTRUG00000024220	cpsf4	100	80.657	ENSHGLG00000017150	CPSF4	100	80.657	Heterocephalus_glaber_female
ENSTRUG00000024220	cpsf4	67	64.407	ENSHGLG00100017302	-	93	62.437	Heterocephalus_glaber_male
ENSTRUG00000024220	cpsf4	87	78.243	ENSHGLG00100009215	-	100	78.243	Heterocephalus_glaber_male
ENSTRUG00000024220	cpsf4	100	87.594	ENSHCOG00000004397	cpsf4	100	87.594	Hippocampus_comes
ENSTRUG00000024220	cpsf4	100	80.443	ENSIPUG00000017147	cpsf4	100	81.550	Ictalurus_punctatus
ENSTRUG00000024220	cpsf4	100	80.952	ENSSTOG00000001688	CPSF4	100	80.952	Ictidomys_tridecemlineatus
ENSTRUG00000024220	cpsf4	100	81.319	ENSJJAG00000019426	Cpsf4	100	81.319	Jaculus_jaculus
ENSTRUG00000024220	cpsf4	100	86.415	ENSKMAG00000015642	cpsf4	100	86.415	Kryptolebias_marmoratus
ENSTRUG00000024220	cpsf4	100	60.000	ENSLACG00000018470	-	100	60.000	Latimeria_chalumnae
ENSTRUG00000024220	cpsf4	100	80.074	ENSLACG00000010938	CPSF4	100	80.074	Latimeria_chalumnae
ENSTRUG00000024220	cpsf4	100	80.669	ENSLOCG00000004814	cpsf4	100	80.669	Lepisosteus_oculatus
ENSTRUG00000024220	cpsf4	100	81.319	ENSLAFG00000000159	CPSF4	100	81.319	Loxodonta_africana
ENSTRUG00000024220	cpsf4	100	81.111	ENSMFAG00000001462	CPSF4	100	81.111	Macaca_fascicularis
ENSTRUG00000024220	cpsf4	100	81.111	ENSMMUG00000019191	CPSF4	100	81.111	Macaca_mulatta
ENSTRUG00000024220	cpsf4	100	81.111	ENSMNEG00000032306	CPSF4	100	81.111	Macaca_nemestrina
ENSTRUG00000024220	cpsf4	100	81.111	ENSMLEG00000034721	CPSF4	100	81.111	Mandrillus_leucophaeus
ENSTRUG00000024220	cpsf4	100	88.346	ENSMAMG00000006244	cpsf4	100	88.346	Mastacembelus_armatus
ENSTRUG00000024220	cpsf4	100	88.346	ENSMZEG00005007515	cpsf4	100	88.346	Maylandia_zebra
ENSTRUG00000024220	cpsf4	87	76.419	ENSMGAG00000004235	CPSF4	100	76.419	Meleagris_gallopavo
ENSTRUG00000024220	cpsf4	100	80.952	ENSMAUG00000021253	Cpsf4	100	80.952	Mesocricetus_auratus
ENSTRUG00000024220	cpsf4	100	80.952	ENSMICG00000017429	CPSF4	100	80.952	Microcebus_murinus
ENSTRUG00000024220	cpsf4	100	80.952	ENSMOCG00000014901	Cpsf4	100	80.952	Microtus_ochrogaster
ENSTRUG00000024220	cpsf4	100	90.977	ENSMMOG00000001813	cpsf4	100	90.977	Mola_mola
ENSTRUG00000024220	cpsf4	100	81.550	ENSMODG00000001367	CPSF4	100	81.550	Monodelphis_domestica
ENSTRUG00000024220	cpsf4	100	85.714	ENSMALG00000012611	cpsf4	100	85.714	Monopterus_albus
ENSTRUG00000024220	cpsf4	100	80.952	MGP_CAROLIEiJ_G0028012	Cpsf4	100	80.952	Mus_caroli
ENSTRUG00000024220	cpsf4	100	80.952	ENSMUSG00000029625	Cpsf4	100	80.952	Mus_musculus
ENSTRUG00000024220	cpsf4	100	80.952	MGP_PahariEiJ_G0024581	Cpsf4	100	80.952	Mus_pahari
ENSTRUG00000024220	cpsf4	100	80.952	MGP_SPRETEiJ_G0029013	Cpsf4	100	80.952	Mus_spretus
ENSTRUG00000024220	cpsf4	100	80.952	ENSMPUG00000016508	CPSF4	100	80.952	Mustela_putorius_furo
ENSTRUG00000024220	cpsf4	87	78.166	ENSMLUG00000010980	CPSF4	100	78.166	Myotis_lucifugus
ENSTRUG00000024220	cpsf4	100	80.952	ENSNGAG00000001567	Cpsf4	100	80.952	Nannospalax_galili
ENSTRUG00000024220	cpsf4	91	87.603	ENSNBRG00000003943	cpsf4	98	87.603	Neolamprologus_brichardi
ENSTRUG00000024220	cpsf4	100	79.323	ENSNLEG00000011074	CPSF4	100	79.323	Nomascus_leucogenys
ENSTRUG00000024220	cpsf4	100	81.550	ENSMEUG00000006955	CPSF4	100	81.550	Notamacropus_eugenii
ENSTRUG00000024220	cpsf4	100	80.952	ENSOPRG00000013663	CPSF4	100	80.952	Ochotona_princeps
ENSTRUG00000024220	cpsf4	98	67.181	ENSODEG00000018283	-	91	67.181	Octodon_degus
ENSTRUG00000024220	cpsf4	100	63.670	ENSODEG00000009779	-	100	63.670	Octodon_degus
ENSTRUG00000024220	cpsf4	100	80.952	ENSODEG00000011181	-	100	80.952	Octodon_degus
ENSTRUG00000024220	cpsf4	100	88.302	ENSONIG00000008495	cpsf4	100	88.302	Oreochromis_niloticus
ENSTRUG00000024220	cpsf4	100	50.538	ENSOANG00000009568	-	100	50.538	Ornithorhynchus_anatinus
ENSTRUG00000024220	cpsf4	87	80.000	ENSOANG00000007729	CPSF4	100	80.000	Ornithorhynchus_anatinus
ENSTRUG00000024220	cpsf4	100	80.952	ENSOCUG00000002437	CPSF4	70	80.952	Oryctolagus_cuniculus
ENSTRUG00000024220	cpsf4	100	87.970	ENSORLG00000022798	cpsf4	100	87.970	Oryzias_latipes
ENSTRUG00000024220	cpsf4	100	87.970	ENSORLG00020008548	cpsf4	100	87.970	Oryzias_latipes_hni
ENSTRUG00000024220	cpsf4	100	87.594	ENSORLG00015019575	cpsf4	100	87.594	Oryzias_latipes_hsok
ENSTRUG00000024220	cpsf4	100	88.346	ENSOMEG00000005176	cpsf4	100	88.346	Oryzias_melastigma
ENSTRUG00000024220	cpsf4	100	80.952	ENSOGAG00000010884	CPSF4	100	80.952	Otolemur_garnettii
ENSTRUG00000024220	cpsf4	100	72.202	ENSOARG00000018668	CPSF4	100	72.202	Ovis_aries
ENSTRUG00000024220	cpsf4	100	81.481	ENSPPAG00000043355	CPSF4	100	81.481	Pan_paniscus
ENSTRUG00000024220	cpsf4	100	80.952	ENSPPRG00000003134	CPSF4	100	80.952	Panthera_pardus
ENSTRUG00000024220	cpsf4	90	80.488	ENSPTIG00000005604	CPSF4	90	80.488	Panthera_tigris_altaica
ENSTRUG00000024220	cpsf4	100	81.481	ENSPTRG00000019453	CPSF4	100	81.481	Pan_troglodytes
ENSTRUG00000024220	cpsf4	100	81.111	ENSPANG00000023123	CPSF4	100	81.111	Papio_anubis
ENSTRUG00000024220	cpsf4	100	81.387	ENSPKIG00000014278	cpsf4	100	81.387	Paramormyrops_kingsleyae
ENSTRUG00000024220	cpsf4	81	59.346	ENSPSIG00000018198	-	100	59.346	Pelodiscus_sinensis
ENSTRUG00000024220	cpsf4	80	80.275	ENSPSIG00000011229	CPSF4	100	80.275	Pelodiscus_sinensis
ENSTRUG00000024220	cpsf4	100	76.806	ENSPMGG00000017735	cpsf4	100	76.806	Periophthalmus_magnuspinnatus
ENSTRUG00000024220	cpsf4	100	80.952	ENSPEMG00000004508	Cpsf4	100	80.952	Peromyscus_maniculatus_bairdii
ENSTRUG00000024220	cpsf4	100	81.550	ENSPCIG00000024776	CPSF4	100	81.550	Phascolarctos_cinereus
ENSTRUG00000024220	cpsf4	100	86.415	ENSPFOG00000014912	cpsf4	100	86.415	Poecilia_formosa
ENSTRUG00000024220	cpsf4	100	79.245	ENSPLAG00000009599	cpsf4	100	79.245	Poecilia_latipinna
ENSTRUG00000024220	cpsf4	100	86.415	ENSPMEG00000009790	cpsf4	100	86.415	Poecilia_mexicana
ENSTRUG00000024220	cpsf4	100	86.038	ENSPREG00000018166	cpsf4	100	86.038	Poecilia_reticulata
ENSTRUG00000024220	cpsf4	87	80.000	ENSPPYG00000017378	CPSF4	100	79.574	Pongo_abelii
ENSTRUG00000024220	cpsf4	100	81.319	ENSPCAG00000001892	CPSF4	100	81.319	Procavia_capensis
ENSTRUG00000024220	cpsf4	100	80.952	ENSPCOG00000012771	CPSF4	100	80.952	Propithecus_coquereli
ENSTRUG00000024220	cpsf4	100	75.824	ENSPVAG00000007531	CPSF4	100	75.824	Pteropus_vampyrus
ENSTRUG00000024220	cpsf4	100	88.346	ENSPNYG00000018559	cpsf4	100	88.346	Pundamilia_nyererei
ENSTRUG00000024220	cpsf4	100	82.963	ENSPNAG00000003736	cpsf4	100	84.074	Pygocentrus_nattereri
ENSTRUG00000024220	cpsf4	100	79.468	ENSRNOG00000000985	Cpsf4	100	79.468	Rattus_norvegicus
ENSTRUG00000024220	cpsf4	87	80.000	ENSRBIG00000033886	CPSF4	100	80.000	Rhinopithecus_bieti
ENSTRUG00000024220	cpsf4	100	79.087	ENSRROG00000040431	CPSF4	100	79.087	Rhinopithecus_roxellana
ENSTRUG00000024220	cpsf4	100	81.111	ENSSBOG00000020493	CPSF4	100	81.111	Saimiri_boliviensis_boliviensis
ENSTRUG00000024220	cpsf4	100	81.550	ENSSHAG00000011533	CPSF4	100	81.550	Sarcophilus_harrisii
ENSTRUG00000024220	cpsf4	100	79.710	ENSSFOG00015007883	cpsf4	100	79.710	Scleropages_formosus
ENSTRUG00000024220	cpsf4	100	82.890	ENSSMAG00000006374	cpsf4	100	82.890	Scophthalmus_maximus
ENSTRUG00000024220	cpsf4	100	89.098	ENSSDUG00000018887	cpsf4	100	89.098	Seriola_dumerili
ENSTRUG00000024220	cpsf4	100	89.098	ENSSLDG00000019078	cpsf4	100	89.098	Seriola_lalandi_dorsalis
ENSTRUG00000024220	cpsf4	87	79.832	ENSSARG00000012416	CPSF4	100	79.832	Sorex_araneus
ENSTRUG00000024220	cpsf4	100	79.630	ENSSPUG00000003549	CPSF4	100	79.630	Sphenodon_punctatus
ENSTRUG00000024220	cpsf4	96	59.127	ENSSPUG00000014803	-	97	59.127	Sphenodon_punctatus
ENSTRUG00000024220	cpsf4	100	84.411	ENSSPAG00000006174	cpsf4	100	84.411	Stegastes_partitus
ENSTRUG00000024220	cpsf4	100	79.087	ENSSSCG00000026896	CPSF4	100	79.087	Sus_scrofa
ENSTRUG00000024220	cpsf4	100	76.981	ENSTGUG00000007552	CPSF4	100	76.981	Taeniopygia_guttata
ENSTRUG00000024220	cpsf4	100	96.198	ENSTNIG00000006265	cpsf4	100	96.198	Tetraodon_nigroviridis
ENSTRUG00000024220	cpsf4	87	71.429	ENSTBEG00000011406	CPSF4	100	71.429	Tupaia_belangeri
ENSTRUG00000024220	cpsf4	100	71.004	ENSTTRG00000003007	CPSF4	100	71.004	Tursiops_truncatus
ENSTRUG00000024220	cpsf4	94	77.642	ENSUAMG00000008051	CPSF4	87	77.959	Ursus_americanus
ENSTRUG00000024220	cpsf4	100	79.468	ENSUMAG00000009474	CPSF4	100	79.468	Ursus_maritimus
ENSTRUG00000024220	cpsf4	100	79.087	ENSVVUG00000008824	CPSF4	100	79.087	Vulpes_vulpes
ENSTRUG00000024220	cpsf4	99	58.052	ENSXETG00000004641	cpsf4l	99	58.052	Xenopus_tropicalis
ENSTRUG00000024220	cpsf4	100	74.643	ENSXETG00000009892	cpsf4	100	75.089	Xenopus_tropicalis
ENSTRUG00000024220	cpsf4	100	86.038	ENSXCOG00000016040	cpsf4	100	86.038	Xiphophorus_couchianus
ENSTRUG00000024220	cpsf4	100	86.415	ENSXMAG00000024670	cpsf4	100	86.415	Xiphophorus_maculatus