EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000025239 (Gene tree)
Gene ID: 101069239
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 2017 bases
Position: chrHE591882.1:41358-43374
Accession: 101069239
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000048202	LSM	PF01423.22	2.9e-14	1	1
ENSTRUP00000051516	LSM	PF01423.22	4.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000058639	-	1327	-	ENSTRUP00000051516	152 (aa)	-	-
ENSTRUT00000052154	-	1410	XM_003976065	ENSTRUP00000048202	133 (aa)	XP_003976114	H2S402

Gene Model

Click here to download ENSTRUG00000025239's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000025239's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000025239	lsm1	100	86.466	ENSG00000175324	LSM1	100	86.466	Homo_sapiens
ENSTRUG00000025239	lsm1	100	93.985	ENSAPOG00000010833	lsm1	100	93.985	Acanthochromis_polyacanthus
ENSTRUG00000025239	lsm1	100	86.466	ENSAMEG00000011141	LSM1	100	86.466	Ailuropoda_melanoleuca
ENSTRUG00000025239	lsm1	58	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSTRUG00000025239	lsm1	100	93.985	ENSAOCG00000017997	-	100	93.985	Amphiprion_ocellaris
ENSTRUG00000025239	lsm1	100	93.985	ENSAOCG00000017096	lsm1	100	93.985	Amphiprion_ocellaris
ENSTRUG00000025239	lsm1	100	93.985	ENSAPEG00000011669	lsm1	100	93.985	Amphiprion_percula
ENSTRUG00000025239	lsm1	100	95.489	ENSATEG00000022266	lsm1	100	95.489	Anabas_testudineus
ENSTRUG00000025239	lsm1	100	86.466	ENSANAG00000027785	LSM1	100	86.466	Aotus_nancymaae
ENSTRUG00000025239	lsm1	100	95.489	ENSACLG00000011400	lsm1	100	95.489	Astatotilapia_calliptera
ENSTRUG00000025239	lsm1	100	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSTRUG00000025239	lsm1	100	85.714	ENSBTAG00000001612	LSM1	100	85.714	Bos_taurus
ENSTRUG00000025239	lsm1	87	50.847	WBGene00003076	lsm-1	90	50.847	Caenorhabditis_elegans
ENSTRUG00000025239	lsm1	100	85.714	ENSCJAG00000048015	LSM1	100	85.714	Callithrix_jacchus
ENSTRUG00000025239	lsm1	100	86.466	ENSCAFG00000006113	LSM1	100	86.466	Canis_familiaris
ENSTRUG00000025239	lsm1	100	86.466	ENSCAFG00020001822	LSM1	100	86.466	Canis_lupus_dingo
ENSTRUG00000025239	lsm1	100	86.466	ENSCHIG00000013194	LSM1	100	86.466	Capra_hircus
ENSTRUG00000025239	lsm1	100	86.466	ENSTSYG00000010394	LSM1	100	86.466	Carlito_syrichta
ENSTRUG00000025239	lsm1	100	86.466	ENSCPOG00000032671	LSM1	100	86.466	Cavia_porcellus
ENSTRUG00000025239	lsm1	100	86.466	ENSCCAG00000037171	LSM1	100	86.466	Cebus_capucinus
ENSTRUG00000025239	lsm1	100	86.466	ENSCATG00000020377	LSM1	100	86.466	Cercocebus_atys
ENSTRUG00000025239	lsm1	100	84.962	ENSCLAG00000001137	LSM1	100	84.962	Chinchilla_lanigera
ENSTRUG00000025239	lsm1	100	86.466	ENSCSAG00000015485	LSM1	100	86.466	Chlorocebus_sabaeus
ENSTRUG00000025239	lsm1	100	85.714	ENSCHOG00000006030	LSM1	100	85.714	Choloepus_hoffmanni
ENSTRUG00000025239	lsm1	95	81.890	ENSCPBG00000006569	LSM1	86	81.890	Chrysemys_picta_bellii
ENSTRUG00000025239	lsm1	99	63.636	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSTRUG00000025239	lsm1	100	86.466	ENSCANG00000019173	LSM1	100	86.466	Colobus_angolensis_palliatus
ENSTRUG00000025239	lsm1	100	85.714	ENSCGRG00001024560	-	100	85.714	Cricetulus_griseus_chok1gshd
ENSTRUG00000025239	lsm1	80	72.973	ENSCGRG00001002259	-	97	72.973	Cricetulus_griseus_chok1gshd
ENSTRUG00000025239	lsm1	80	72.973	ENSCGRG00000013603	-	97	72.973	Cricetulus_griseus_crigri
ENSTRUG00000025239	lsm1	100	85.714	ENSCGRG00000006554	-	100	85.714	Cricetulus_griseus_crigri
ENSTRUG00000025239	lsm1	100	94.737	ENSCSEG00000010570	lsm1	92	94.737	Cynoglossus_semilaevis
ENSTRUG00000025239	lsm1	100	93.233	ENSCSEG00000008319	lsm1	92	93.233	Cynoglossus_semilaevis
ENSTRUG00000025239	lsm1	100	94.737	ENSCVAG00000003871	lsm1	100	94.737	Cyprinodon_variegatus
ENSTRUG00000025239	lsm1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSTRUG00000025239	lsm1	100	85.714	ENSDNOG00000032911	-	100	85.714	Dasypus_novemcinctus
ENSTRUG00000025239	lsm1	99	81.818	ENSDNOG00000030989	-	99	81.818	Dasypus_novemcinctus
ENSTRUG00000025239	lsm1	89	68.067	ENSDNOG00000046620	-	100	68.067	Dasypus_novemcinctus
ENSTRUG00000025239	lsm1	100	86.466	ENSDNOG00000046387	-	100	86.466	Dasypus_novemcinctus
ENSTRUG00000025239	lsm1	100	86.466	ENSDORG00000028172	Lsm1	100	86.466	Dipodomys_ordii
ENSTRUG00000025239	lsm1	93	60.484	FBgn0261067	LSm1	91	60.484	Drosophila_melanogaster
ENSTRUG00000025239	lsm1	100	84.962	ENSEASG00005016677	LSM1	100	84.962	Equus_asinus_asinus
ENSTRUG00000025239	lsm1	100	84.962	ENSECAG00000010461	LSM1	100	84.962	Equus_caballus
ENSTRUG00000025239	lsm1	72	78.125	ENSEEUG00000015181	LSM1	97	78.125	Erinaceus_europaeus
ENSTRUG00000025239	lsm1	100	93.233	ENSELUG00000002322	lsm1	100	93.233	Esox_lucius
ENSTRUG00000025239	lsm1	100	77.444	ENSELUG00000023374	lsm1	100	77.444	Esox_lucius
ENSTRUG00000025239	lsm1	100	86.466	ENSFCAG00000039335	LSM1	100	86.466	Felis_catus
ENSTRUG00000025239	lsm1	89	85.593	ENSFALG00000006723	LSM1	100	85.593	Ficedula_albicollis
ENSTRUG00000025239	lsm1	100	86.466	ENSFDAG00000007658	LSM1	100	86.466	Fukomys_damarensis
ENSTRUG00000025239	lsm1	100	94.737	ENSFHEG00000009556	lsm1	100	94.737	Fundulus_heteroclitus
ENSTRUG00000025239	lsm1	100	93.233	ENSGMOG00000016651	lsm1	98	93.233	Gadus_morhua
ENSTRUG00000025239	lsm1	100	84.962	ENSGALG00000003245	LSM1	100	84.962	Gallus_gallus
ENSTRUG00000025239	lsm1	100	94.737	ENSGAFG00000011355	lsm1	100	94.737	Gambusia_affinis
ENSTRUG00000025239	lsm1	100	95.489	ENSGACG00000011763	lsm1	98	95.489	Gasterosteus_aculeatus
ENSTRUG00000025239	lsm1	100	87.970	ENSGAGG00000024065	LSM1	100	87.970	Gopherus_agassizii
ENSTRUG00000025239	lsm1	100	86.466	ENSGGOG00000022658	LSM1	100	86.466	Gorilla_gorilla
ENSTRUG00000025239	lsm1	100	95.489	ENSHBUG00000010897	lsm1	100	95.489	Haplochromis_burtoni
ENSTRUG00000025239	lsm1	100	67.669	ENSHGLG00000017574	-	100	67.669	Heterocephalus_glaber_female
ENSTRUG00000025239	lsm1	100	86.466	ENSHGLG00000005711	LSM1	100	86.466	Heterocephalus_glaber_female
ENSTRUG00000025239	lsm1	100	86.466	ENSHGLG00100017660	LSM1	100	86.466	Heterocephalus_glaber_male
ENSTRUG00000025239	lsm1	100	67.669	ENSHGLG00100012152	-	100	67.669	Heterocephalus_glaber_male
ENSTRUG00000025239	lsm1	100	93.985	ENSHCOG00000017233	lsm1	100	93.985	Hippocampus_comes
ENSTRUG00000025239	lsm1	100	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSTRUG00000025239	lsm1	58	92.208	ENSSTOG00000026870	LSM1	94	92.208	Ictidomys_tridecemlineatus
ENSTRUG00000025239	lsm1	100	85.714	ENSJJAG00000014605	-	100	85.714	Jaculus_jaculus
ENSTRUG00000025239	lsm1	100	95.489	ENSKMAG00000003016	lsm1	100	95.489	Kryptolebias_marmoratus
ENSTRUG00000025239	lsm1	100	95.489	ENSLBEG00000022352	lsm1	100	95.489	Labrus_bergylta
ENSTRUG00000025239	lsm1	90	83.333	ENSLACG00000010947	LSM1	99	83.333	Latimeria_chalumnae
ENSTRUG00000025239	lsm1	100	88.722	ENSLOCG00000015149	lsm1	100	88.722	Lepisosteus_oculatus
ENSTRUG00000025239	lsm1	100	86.466	ENSLAFG00000003534	LSM1	100	86.466	Loxodonta_africana
ENSTRUG00000025239	lsm1	100	86.466	ENSMFAG00000032661	LSM1	100	86.466	Macaca_fascicularis
ENSTRUG00000025239	lsm1	100	86.466	ENSMLEG00000034535	LSM1	100	86.466	Mandrillus_leucophaeus
ENSTRUG00000025239	lsm1	100	95.489	ENSMAMG00000007464	lsm1	100	95.489	Mastacembelus_armatus
ENSTRUG00000025239	lsm1	100	95.489	ENSMZEG00005010321	lsm1	100	95.489	Maylandia_zebra
ENSTRUG00000025239	lsm1	100	84.962	ENSMGAG00000002125	LSM1	100	84.962	Meleagris_gallopavo
ENSTRUG00000025239	lsm1	100	86.466	ENSMICG00000030726	LSM1	100	86.466	Microcebus_murinus
ENSTRUG00000025239	lsm1	100	85.714	ENSMOCG00000022817	Lsm1	100	85.714	Microtus_ochrogaster
ENSTRUG00000025239	lsm1	100	94.737	ENSMMOG00000015466	lsm1	100	94.737	Mola_mola
ENSTRUG00000025239	lsm1	100	87.218	ENSMODG00000010732	-	100	87.218	Monodelphis_domestica
ENSTRUG00000025239	lsm1	58	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSTRUG00000025239	lsm1	100	84.211	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	Mus_caroli
ENSTRUG00000025239	lsm1	100	84.211	ENSMUSG00000037296	Lsm1	100	84.211	Mus_musculus
ENSTRUG00000025239	lsm1	100	84.211	MGP_PahariEiJ_G0021400	Lsm1	100	84.211	Mus_pahari
ENSTRUG00000025239	lsm1	100	84.211	MGP_SPRETEiJ_G0032049	Lsm1	100	84.211	Mus_spretus
ENSTRUG00000025239	lsm1	100	87.218	ENSMPUG00000009883	LSM1	100	87.218	Mustela_putorius_furo
ENSTRUG00000025239	lsm1	100	86.466	ENSMLUG00000003734	LSM1	100	86.466	Myotis_lucifugus
ENSTRUG00000025239	lsm1	100	85.714	ENSNGAG00000003753	Lsm1	100	85.714	Nannospalax_galili
ENSTRUG00000025239	lsm1	58	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSTRUG00000025239	lsm1	100	86.466	ENSNLEG00000029390	LSM1	100	86.466	Nomascus_leucogenys
ENSTRUG00000025239	lsm1	100	87.218	ENSMEUG00000014077	LSM1	100	87.218	Notamacropus_eugenii
ENSTRUG00000025239	lsm1	88	82.051	ENSOPRG00000000333	LSM1	100	82.051	Ochotona_princeps
ENSTRUG00000025239	lsm1	100	86.466	ENSODEG00000004834	LSM1	100	86.466	Octodon_degus
ENSTRUG00000025239	lsm1	100	95.489	ENSONIG00000010782	lsm1	100	95.489	Oreochromis_niloticus
ENSTRUG00000025239	lsm1	100	87.218	ENSOANG00000003256	LSM1	100	87.218	Ornithorhynchus_anatinus
ENSTRUG00000025239	lsm1	100	86.466	ENSOCUG00000015399	LSM1	100	86.466	Oryctolagus_cuniculus
ENSTRUG00000025239	lsm1	100	96.992	ENSORLG00000030288	lsm1	100	96.992	Oryzias_latipes
ENSTRUG00000025239	lsm1	100	96.992	ENSORLG00020003941	lsm1	100	96.992	Oryzias_latipes_hni
ENSTRUG00000025239	lsm1	100	95.489	ENSORLG00020006213	-	86	95.489	Oryzias_latipes_hni
ENSTRUG00000025239	lsm1	100	96.992	ENSORLG00015018350	lsm1	100	96.992	Oryzias_latipes_hsok
ENSTRUG00000025239	lsm1	100	95.489	ENSOMEG00000012454	lsm1	100	95.489	Oryzias_melastigma
ENSTRUG00000025239	lsm1	100	86.466	ENSOGAG00000015161	LSM1	100	86.466	Otolemur_garnettii
ENSTRUG00000025239	lsm1	100	86.466	ENSOARG00000001317	LSM1	100	86.466	Ovis_aries
ENSTRUG00000025239	lsm1	100	86.466	ENSPPAG00000032279	LSM1	100	86.466	Pan_paniscus
ENSTRUG00000025239	lsm1	100	86.466	ENSPPRG00000014172	-	100	86.466	Panthera_pardus
ENSTRUG00000025239	lsm1	100	86.466	ENSPTIG00000010289	LSM1	100	86.466	Panthera_tigris_altaica
ENSTRUG00000025239	lsm1	100	86.466	ENSPTRG00000020169	LSM1	100	86.466	Pan_troglodytes
ENSTRUG00000025239	lsm1	100	86.466	ENSPANG00000008814	LSM1	100	86.466	Papio_anubis
ENSTRUG00000025239	lsm1	100	78.195	ENSPKIG00000019409	LSM1	99	78.195	Paramormyrops_kingsleyae
ENSTRUG00000025239	lsm1	100	86.466	ENSPKIG00000001839	lsm1	100	86.466	Paramormyrops_kingsleyae
ENSTRUG00000025239	lsm1	97	82.946	ENSPSIG00000012563	LSM1	98	82.946	Pelodiscus_sinensis
ENSTRUG00000025239	lsm1	58	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSTRUG00000025239	lsm1	85	74.336	ENSPMAG00000002671	lsm1	100	74.336	Petromyzon_marinus
ENSTRUG00000025239	lsm1	100	85.714	ENSPCIG00000008880	LSM1	100	85.714	Phascolarctos_cinereus
ENSTRUG00000025239	lsm1	100	94.737	ENSPFOG00000016029	lsm1	100	94.737	Poecilia_formosa
ENSTRUG00000025239	lsm1	100	94.737	ENSPLAG00000007879	lsm1	100	94.737	Poecilia_latipinna
ENSTRUG00000025239	lsm1	100	94.737	ENSPMEG00000023550	lsm1	100	94.737	Poecilia_mexicana
ENSTRUG00000025239	lsm1	100	94.737	ENSPREG00000009574	lsm1	100	94.737	Poecilia_reticulata
ENSTRUG00000025239	lsm1	100	86.466	ENSPPYG00000018521	LSM1	100	86.466	Pongo_abelii
ENSTRUG00000025239	lsm1	100	86.466	ENSPCOG00000020901	-	100	86.466	Propithecus_coquereli
ENSTRUG00000025239	lsm1	100	86.466	ENSPVAG00000006016	LSM1	100	86.466	Pteropus_vampyrus
ENSTRUG00000025239	lsm1	100	95.489	ENSPNYG00000018067	lsm1	100	95.489	Pundamilia_nyererei
ENSTRUG00000025239	lsm1	100	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSTRUG00000025239	lsm1	100	84.962	ENSRNOG00000015375	Lsm1	100	84.962	Rattus_norvegicus
ENSTRUG00000025239	lsm1	100	86.466	ENSRBIG00000027449	LSM1	100	86.466	Rhinopithecus_bieti
ENSTRUG00000025239	lsm1	100	86.466	ENSRROG00000036074	LSM1	100	86.466	Rhinopithecus_roxellana
ENSTRUG00000025239	lsm1	83	42.735	YJL124C	LSM1	67	42.735	Saccharomyces_cerevisiae
ENSTRUG00000025239	lsm1	100	87.218	ENSSHAG00000017260	LSM1	100	87.218	Sarcophilus_harrisii
ENSTRUG00000025239	lsm1	100	86.466	ENSSFOG00015019528	lsm1	100	86.466	Scleropages_formosus
ENSTRUG00000025239	lsm1	100	95.489	ENSSMAG00000004930	lsm1	100	95.489	Scophthalmus_maximus
ENSTRUG00000025239	lsm1	100	93.985	ENSSDUG00000021823	lsm1	100	93.985	Seriola_dumerili
ENSTRUG00000025239	lsm1	100	93.985	ENSSLDG00000012154	lsm1	100	93.985	Seriola_lalandi_dorsalis
ENSTRUG00000025239	lsm1	100	87.970	ENSSPUG00000014878	LSM1	100	87.970	Sphenodon_punctatus
ENSTRUG00000025239	lsm1	100	94.737	ENSSPAG00000020548	lsm1	100	94.737	Stegastes_partitus
ENSTRUG00000025239	lsm1	100	86.466	ENSSSCG00000039058	LSM1	100	86.466	Sus_scrofa
ENSTRUG00000025239	lsm1	100	87.218	ENSTGUG00000004793	LSM1	100	87.218	Taeniopygia_guttata
ENSTRUG00000025239	lsm1	100	96.241	ENSTNIG00000004055	lsm1	100	96.241	Tetraodon_nigroviridis
ENSTRUG00000025239	lsm1	88	84.615	ENSTBEG00000015884	LSM1	100	84.615	Tupaia_belangeri
ENSTRUG00000025239	lsm1	100	86.466	ENSTTRG00000004482	LSM1	100	86.466	Tursiops_truncatus
ENSTRUG00000025239	lsm1	100	86.466	ENSUAMG00000004103	LSM1	100	86.466	Ursus_americanus
ENSTRUG00000025239	lsm1	100	86.466	ENSUMAG00000009132	LSM1	100	86.466	Ursus_maritimus
ENSTRUG00000025239	lsm1	58	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSTRUG00000025239	lsm1	61	65.432	ENSVVUG00000014880	-	86	65.432	Vulpes_vulpes
ENSTRUG00000025239	lsm1	100	86.466	ENSVVUG00000020191	LSM1	100	86.466	Vulpes_vulpes
ENSTRUG00000025239	lsm1	100	82.482	ENSXETG00000009004	lsm1	100	82.482	Xenopus_tropicalis
ENSTRUG00000025239	lsm1	100	94.737	ENSXCOG00000015631	lsm1	100	94.737	Xiphophorus_couchianus
ENSTRUG00000025239	lsm1	100	94.737	ENSXMAG00000026637	lsm1	100	94.737	Xiphophorus_maculatus