EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTSYG00000003406 (Gene tree)
Gene ID: 103260576
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Carlito_syrichta
Status: putative
Strand: Plus strand
Length: 259888 bases
Position: chrKE939380.1:242399-502286
Accession: 103260576
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTSYP00000003134	EST1	PF10374.9	8e-16	1	1
ENSTSYP00000003134	EST1_DNA_bind	PF10373.9	1.1e-60	1	1
ENSTSYP00000034364	EST1_DNA_bind	PF10373.9	5.5e-18	1	1
ENSTSYP00000003134	PIN_4	PF13638.6	1e-21	1	1
ENSTSYP00000034364	PIN_4	PF13638.6	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTSYT00000047594	SMG6-202	3398	XM_008058211	ENSTSYP00000034364	511 (aa)	XP_008056402	A0A1U7TTK5
ENSTSYT00000003426	SMG6-201	5877	XM_008058210	ENSTSYP00000003134	1419 (aa)	XP_008056401	A0A1U7TRN8

Gene Model

Click here to download ENSTSYG00000003406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTSYG00000003406's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTSYG00000003406	SMG6	100	97.456	ENSG00000070366	SMG6	100	97.456	Homo_sapiens
ENSTSYG00000003406	SMG6	100	57.587	ENSAPOG00000019448	smg6	74	54.553	Acanthochromis_polyacanthus
ENSTSYG00000003406	SMG6	100	97.456	ENSAMEG00000007632	SMG6	100	93.164	Ailuropoda_melanoleuca
ENSTSYG00000003406	SMG6	100	59.774	ENSACIG00000012997	smg6	98	49.605	Amphilophus_citrinellus
ENSTSYG00000003406	SMG6	100	57.221	ENSAOCG00000002630	smg6	74	54.914	Amphiprion_ocellaris
ENSTSYG00000003406	SMG6	100	57.221	ENSAPEG00000019101	smg6	74	54.992	Amphiprion_percula
ENSTSYG00000003406	SMG6	100	58.318	ENSATEG00000006483	smg6	73	54.531	Anabas_testudineus
ENSTSYG00000003406	SMG6	87	55.591	ENSACAG00000011783	SMG6	99	56.850	Anolis_carolinensis
ENSTSYG00000003406	SMG6	100	97.260	ENSANAG00000035760	SMG6	100	93.798	Aotus_nancymaae
ENSTSYG00000003406	SMG6	100	58.088	ENSACLG00000005288	smg6	80	54.879	Astatotilapia_calliptera
ENSTSYG00000003406	SMG6	100	61.641	ENSAMXG00000017326	smg6	99	49.931	Astyanax_mexicanus
ENSTSYG00000003406	SMG6	100	97.065	ENSBTAG00000000267	SMG6	100	92.459	Bos_taurus
ENSTSYG00000003406	SMG6	100	97.065	ENSCJAG00000001820	SMG6	100	93.164	Callithrix_jacchus
ENSTSYG00000003406	SMG6	100	97.260	ENSCAFG00000019260	SMG6	100	92.953	Canis_familiaris
ENSTSYG00000003406	SMG6	100	97.260	ENSCAFG00020009770	SMG6	100	92.953	Canis_lupus_dingo
ENSTSYG00000003406	SMG6	100	97.456	ENSCHIG00000021998	SMG6	100	92.248	Capra_hircus
ENSTSYG00000003406	SMG6	98	77.986	ENSCAPG00000016197	SMG6	99	83.138	Cavia_aperea
ENSTSYG00000003406	SMG6	100	96.869	ENSCPOG00000014878	SMG6	100	91.268	Cavia_porcellus
ENSTSYG00000003406	SMG6	100	97.260	ENSCCAG00000035801	SMG6	100	93.728	Cebus_capucinus
ENSTSYG00000003406	SMG6	100	96.477	ENSCATG00000031956	SMG6	100	93.235	Cercocebus_atys
ENSTSYG00000003406	SMG6	100	97.456	ENSCLAG00000006748	SMG6	100	92.882	Chinchilla_lanigera
ENSTSYG00000003406	SMG6	100	96.869	ENSCSAG00000013800	SMG6	100	93.658	Chlorocebus_sabaeus
ENSTSYG00000003406	SMG6	57	97.015	ENSCHOG00000005024	-	73	97.015	Choloepus_hoffmanni
ENSTSYG00000003406	SMG6	100	82.583	ENSCPBG00000020369	SMG6	100	72.330	Chrysemys_picta_bellii
ENSTSYG00000003406	SMG6	99	34.942	ENSCING00000010099	-	99	35.373	Ciona_intestinalis
ENSTSYG00000003406	SMG6	54	37.456	ENSCSAVG00000007638	-	99	37.589	Ciona_savignyi
ENSTSYG00000003406	SMG6	100	97.065	ENSCANG00000031764	SMG6	100	97.065	Colobus_angolensis_palliatus
ENSTSYG00000003406	SMG6	55	88.062	ENSCGRG00001019595	Smg6	98	87.852	Cricetulus_griseus_chok1gshd
ENSTSYG00000003406	SMG6	98	84.510	ENSCGRG00000007782	Smg6	100	84.654	Cricetulus_griseus_crigri
ENSTSYG00000003406	SMG6	100	60.829	ENSCSEG00000012757	smg6	91	53.017	Cynoglossus_semilaevis
ENSTSYG00000003406	SMG6	100	57.350	ENSCVAG00000012789	smg6	86	53.463	Cyprinodon_variegatus
ENSTSYG00000003406	SMG6	100	61.090	ENSDARG00000100481	smg6	100	50.299	Danio_rerio
ENSTSYG00000003406	SMG6	100	97.260	ENSDNOG00000048283	SMG6	100	92.107	Dasypus_novemcinctus
ENSTSYG00000003406	SMG6	100	98.239	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSTSYG00000003406	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSTSYG00000003406	SMG6	99	55.493	ENSEBUG00000005059	smg6	73	48.801	Eptatretus_burgeri
ENSTSYG00000003406	SMG6	99	97.446	ENSEASG00005009318	SMG6	99	93.366	Equus_asinus_asinus
ENSTSYG00000003406	SMG6	99	97.250	ENSECAG00000006519	SMG6	99	93.084	Equus_caballus
ENSTSYG00000003406	SMG6	99	85.490	ENSEEUG00000003493	SMG6	100	81.959	Erinaceus_europaeus
ENSTSYG00000003406	SMG6	100	61.466	ENSELUG00000005934	smg6	69	54.927	Esox_lucius
ENSTSYG00000003406	SMG6	100	97.847	ENSFCAG00000028817	SMG6	100	93.939	Felis_catus
ENSTSYG00000003406	SMG6	100	83.170	ENSFALG00000006538	SMG6	100	71.286	Ficedula_albicollis
ENSTSYG00000003406	SMG6	100	97.065	ENSFDAG00000015106	SMG6	100	92.459	Fukomys_damarensis
ENSTSYG00000003406	SMG6	100	56.124	ENSFHEG00000013282	smg6	75	53.115	Fundulus_heteroclitus
ENSTSYG00000003406	SMG6	100	52.471	ENSGMOG00000019077	smg6	58	68.545	Gadus_morhua
ENSTSYG00000003406	SMG6	100	83.203	ENSGALG00000003108	SMG6	98	70.796	Gallus_gallus
ENSTSYG00000003406	SMG6	100	56.934	ENSGAFG00000000379	smg6	74	53.792	Gambusia_affinis
ENSTSYG00000003406	SMG6	100	59.280	ENSGACG00000020521	smg6	99	53.550	Gasterosteus_aculeatus
ENSTSYG00000003406	SMG6	100	82.779	ENSGAGG00000025617	SMG6	100	71.915	Gopherus_agassizii
ENSTSYG00000003406	SMG6	100	97.652	ENSGGOG00000017156	SMG6	100	94.221	Gorilla_gorilla
ENSTSYG00000003406	SMG6	100	58.088	ENSHBUG00000021311	smg6	74	55.321	Haplochromis_burtoni
ENSTSYG00000003406	SMG6	100	97.260	ENSHGLG00000012882	SMG6	100	91.977	Heterocephalus_glaber_female
ENSTSYG00000003406	SMG6	100	97.260	ENSHGLG00100017815	SMG6	100	92.048	Heterocephalus_glaber_male
ENSTSYG00000003406	SMG6	100	59.134	ENSHCOG00000008761	smg6	97	53.603	Hippocampus_comes
ENSTSYG00000003406	SMG6	100	60.721	ENSIPUG00000012493	smg6	75	54.317	Ictalurus_punctatus
ENSTSYG00000003406	SMG6	100	98.434	ENSSTOG00000028127	SMG6	100	93.446	Ictidomys_tridecemlineatus
ENSTSYG00000003406	SMG6	79	87.957	ENSJJAG00000015367	Smg6	95	86.049	Jaculus_jaculus
ENSTSYG00000003406	SMG6	100	58.909	ENSKMAG00000000279	smg6	75	54.474	Kryptolebias_marmoratus
ENSTSYG00000003406	SMG6	100	56.080	ENSLBEG00000002184	smg6	76	52.959	Labrus_bergylta
ENSTSYG00000003406	SMG6	55	57.543	ENSLACG00000000806	-	98	58.445	Latimeria_chalumnae
ENSTSYG00000003406	SMG6	91	80.000	ENSLACG00000003276	SMG6	100	80.000	Latimeria_chalumnae
ENSTSYG00000003406	SMG6	100	68.015	ENSLOCG00000006448	smg6	99	54.198	Lepisosteus_oculatus
ENSTSYG00000003406	SMG6	100	96.673	ENSLAFG00000001261	SMG6	100	92.530	Loxodonta_africana
ENSTSYG00000003406	SMG6	100	97.065	ENSMFAG00000003394	SMG6	100	93.658	Macaca_fascicularis
ENSTSYG00000003406	SMG6	100	97.065	ENSMMUG00000023161	SMG6	100	93.587	Macaca_mulatta
ENSTSYG00000003406	SMG6	100	97.065	ENSMNEG00000044592	SMG6	100	89.311	Macaca_nemestrina
ENSTSYG00000003406	SMG6	100	97.065	ENSMLEG00000029353	SMG6	100	97.180	Mandrillus_leucophaeus
ENSTSYG00000003406	SMG6	100	58.984	ENSMAMG00000020119	smg6	82	54.301	Mastacembelus_armatus
ENSTSYG00000003406	SMG6	100	58.088	ENSMZEG00005024736	smg6	74	55.137	Maylandia_zebra
ENSTSYG00000003406	SMG6	72	85.014	ENSMGAG00000017200	-	100	85.014	Meleagris_gallopavo
ENSTSYG00000003406	SMG6	74	64.689	ENSMGAG00000005401	-	99	64.601	Meleagris_gallopavo
ENSTSYG00000003406	SMG6	100	98.239	ENSMICG00000012913	SMG6	100	95.349	Microcebus_murinus
ENSTSYG00000003406	SMG6	100	60.456	ENSMMOG00000010883	smg6	100	48.220	Mola_mola
ENSTSYG00000003406	SMG6	87	51.502	ENSMODG00000024395	-	99	40.705	Monodelphis_domestica
ENSTSYG00000003406	SMG6	99	41.879	ENSMODG00000024410	-	99	41.879	Monodelphis_domestica
ENSTSYG00000003406	SMG6	99	40.971	ENSMODG00000024463	-	99	41.879	Monodelphis_domestica
ENSTSYG00000003406	SMG6	99	41.487	ENSMODG00000024460	-	99	41.487	Monodelphis_domestica
ENSTSYG00000003406	SMG6	100	95.108	ENSMODG00000010622	SMG6	100	85.373	Monodelphis_domestica
ENSTSYG00000003406	SMG6	100	57.299	ENSMALG00000001106	smg6	73	54.907	Monopterus_albus
ENSTSYG00000003406	SMG6	100	97.652	MGP_CAROLIEiJ_G0016729	Smg6	100	90.909	Mus_caroli
ENSTSYG00000003406	SMG6	100	97.652	ENSMUSG00000038290	Smg6	100	90.627	Mus_musculus
ENSTSYG00000003406	SMG6	100	97.456	MGP_PahariEiJ_G0017866	Smg6	100	90.698	Mus_pahari
ENSTSYG00000003406	SMG6	100	97.652	MGP_SPRETEiJ_G0017572	Smg6	100	90.698	Mus_spretus
ENSTSYG00000003406	SMG6	100	97.065	ENSMPUG00000013046	SMG6	100	92.953	Mustela_putorius_furo
ENSTSYG00000003406	SMG6	100	97.260	ENSMLUG00000005739	SMG6	100	92.600	Myotis_lucifugus
ENSTSYG00000003406	SMG6	100	96.477	ENSNGAG00000007287	Smg6	100	90.425	Nannospalax_galili
ENSTSYG00000003406	SMG6	100	58.287	ENSNBRG00000009511	smg6	81	54.496	Neolamprologus_brichardi
ENSTSYG00000003406	SMG6	100	97.652	ENSNLEG00000017171	SMG6	100	97.652	Nomascus_leucogenys
ENSTSYG00000003406	SMG6	100	94.129	ENSMEUG00000015804	SMG6	100	81.681	Notamacropus_eugenii
ENSTSYG00000003406	SMG6	92	83.547	ENSOPRG00000000579	SMG6	85	97.895	Ochotona_princeps
ENSTSYG00000003406	SMG6	100	96.484	ENSODEG00000008038	SMG6	100	85.433	Octodon_degus
ENSTSYG00000003406	SMG6	100	58.272	ENSONIG00000005594	smg6	100	51.706	Oreochromis_niloticus
ENSTSYG00000003406	SMG6	59	85.333	ENSOANG00000030166	-	90	85.333	Ornithorhynchus_anatinus
ENSTSYG00000003406	SMG6	100	97.266	ENSOCUG00000013018	SMG6	100	92.963	Oryctolagus_cuniculus
ENSTSYG00000003406	SMG6	100	56.545	ENSORLG00000003317	smg6	74	54.474	Oryzias_latipes
ENSTSYG00000003406	SMG6	100	56.673	ENSORLG00020015343	smg6	74	54.209	Oryzias_latipes_hni
ENSTSYG00000003406	SMG6	100	56.182	ENSORLG00015020454	smg6	74	54.474	Oryzias_latipes_hsok
ENSTSYG00000003406	SMG6	100	56.137	ENSOMEG00000010838	smg6	75	53.333	Oryzias_melastigma
ENSTSYG00000003406	SMG6	100	97.847	ENSOGAG00000004483	SMG6	100	94.225	Otolemur_garnettii
ENSTSYG00000003406	SMG6	100	97.260	ENSOARG00000015076	SMG6	100	92.058	Ovis_aries
ENSTSYG00000003406	SMG6	100	97.456	ENSPPAG00000043296	SMG6	100	94.010	Pan_paniscus
ENSTSYG00000003406	SMG6	100	97.847	ENSPPRG00000014581	SMG6	100	94.010	Panthera_pardus
ENSTSYG00000003406	SMG6	100	97.847	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSTSYG00000003406	SMG6	100	97.456	ENSPTRG00000008544	SMG6	100	97.456	Pan_troglodytes
ENSTSYG00000003406	SMG6	100	97.065	ENSPANG00000024588	SMG6	100	93.658	Papio_anubis
ENSTSYG00000003406	SMG6	89	70.515	ENSPSIG00000006660	SMG6	96	70.515	Pelodiscus_sinensis
ENSTSYG00000003406	SMG6	100	59.439	ENSPMGG00000000844	smg6	100	60.614	Periophthalmus_magnuspinnatus
ENSTSYG00000003406	SMG6	100	97.847	ENSPEMG00000020707	Smg6	100	92.037	Peromyscus_maniculatus_bairdii
ENSTSYG00000003406	SMG6	100	59.328	ENSPFOG00000012035	smg6	100	50.971	Poecilia_formosa
ENSTSYG00000003406	SMG6	100	56.752	ENSPLAG00000017660	smg6	74	53.611	Poecilia_latipinna
ENSTSYG00000003406	SMG6	100	57.273	ENSPMEG00000000258	smg6	74	53.925	Poecilia_mexicana
ENSTSYG00000003406	SMG6	100	56.752	ENSPREG00000010066	smg6	74	53.479	Poecilia_reticulata
ENSTSYG00000003406	SMG6	100	88.467	ENSPPYG00000007790	SMG6	100	88.467	Pongo_abelii
ENSTSYG00000003406	SMG6	100	88.513	ENSPCAG00000000552	SMG6	100	88.513	Procavia_capensis
ENSTSYG00000003406	SMG6	100	97.847	ENSPCOG00000020925	SMG6	100	94.715	Propithecus_coquereli
ENSTSYG00000003406	SMG6	100	97.065	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSTSYG00000003406	SMG6	100	60.878	ENSPNYG00000024151	smg6	79	57.085	Pundamilia_nyererei
ENSTSYG00000003406	SMG6	100	61.967	ENSPNAG00000015480	smg6	87	62.657	Pygocentrus_nattereri
ENSTSYG00000003406	SMG6	100	97.456	ENSRNOG00000003041	Smg6	100	91.332	Rattus_norvegicus
ENSTSYG00000003406	SMG6	100	96.673	ENSRBIG00000024746	SMG6	100	93.658	Rhinopithecus_bieti
ENSTSYG00000003406	SMG6	100	96.673	ENSRROG00000030423	SMG6	100	96.673	Rhinopithecus_roxellana
ENSTSYG00000003406	SMG6	100	97.260	ENSSBOG00000022518	SMG6	100	92.037	Saimiri_boliviensis_boliviensis
ENSTSYG00000003406	SMG6	97	40.000	ENSSHAG00000000380	-	99	40.000	Sarcophilus_harrisii
ENSTSYG00000003406	SMG6	100	94.129	ENSSHAG00000010045	SMG6	98	85.007	Sarcophilus_harrisii
ENSTSYG00000003406	SMG6	100	64.112	ENSSFOG00015005436	smg6	70	56.693	Scleropages_formosus
ENSTSYG00000003406	SMG6	100	56.624	ENSSMAG00000019777	smg6	73	54.779	Scophthalmus_maximus
ENSTSYG00000003406	SMG6	100	57.741	ENSSDUG00000016412	smg6	74	54.771	Seriola_dumerili
ENSTSYG00000003406	SMG6	91	55.666	ENSSLDG00000020747	smg6	77	53.821	Seriola_lalandi_dorsalis
ENSTSYG00000003406	SMG6	100	81.323	ENSSPUG00000007152	SMG6	99	69.644	Sphenodon_punctatus
ENSTSYG00000003406	SMG6	100	57.509	ENSSPAG00000015633	smg6	74	54.553	Stegastes_partitus
ENSTSYG00000003406	SMG6	100	96.673	ENSSSCG00000017826	SMG6	100	92.254	Sus_scrofa
ENSTSYG00000003406	SMG6	100	83.953	ENSTGUG00000005836	SMG6	100	71.509	Taeniopygia_guttata
ENSTSYG00000003406	SMG6	100	58.459	ENSTRUG00000000358	smg6	100	48.663	Takifugu_rubripes
ENSTSYG00000003406	SMG6	100	59.665	ENSTNIG00000016164	smg6	100	50.066	Tetraodon_nigroviridis
ENSTSYG00000003406	SMG6	100	89.147	ENSTBEG00000011424	SMG6	100	89.147	Tupaia_belangeri
ENSTSYG00000003406	SMG6	100	89.432	ENSTTRG00000001175	SMG6	91	90.455	Tursiops_truncatus
ENSTSYG00000003406	SMG6	100	97.082	ENSUAMG00000025152	SMG6	100	92.867	Ursus_americanus
ENSTSYG00000003406	SMG6	100	97.652	ENSUMAG00000009306	SMG6	100	93.718	Ursus_maritimus
ENSTSYG00000003406	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSTSYG00000003406	SMG6	100	97.260	ENSVVUG00000021727	SMG6	100	92.741	Vulpes_vulpes
ENSTSYG00000003406	SMG6	100	68.085	ENSXETG00000023799	SMG6	100	58.463	Xenopus_tropicalis
ENSTSYG00000003406	SMG6	100	60.000	ENSXCOG00000009867	smg6	74	54.712	Xiphophorus_couchianus
ENSTSYG00000003406	SMG6	100	57.091	ENSXMAG00000010321	smg6	85	54.027	Xiphophorus_maculatus