EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTSYG00000004240 (Gene tree)
Gene ID: 103272973
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Carlito_syrichta
Status: putative
Strand: Plus strand
Length: 70496 bases
Position: chrKE948024.1:110081-180576
Accession: 103272973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTSYP00000003887	ResIII	PF04851.15	3.1e-12	1	1
ENSTSYP00000026471	ResIII	PF04851.15	3.8e-12	1	1
ENSTSYP00000032455	ResIII	PF04851.15	3.9e-12	1	1
ENSTSYP00000013921	ResIII	PF04851.15	4e-12	1	1
ENSTSYP00000003887	DEAD	PF00270.29	1.2e-06	1	1
ENSTSYP00000026471	DEAD	PF00270.29	1.4e-06	1	1
ENSTSYP00000032455	DEAD	PF00270.29	1.4e-06	1	1
ENSTSYP00000013921	DEAD	PF00270.29	1.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTSYT00000004240	SMARCA1-204	3012	XM_008070444	ENSTSYP00000003887	1003 (aa)	-	UPI000C2F3402
ENSTSYT00000032918	SMARCA1-203	3177	-	ENSTSYP00000026471	1058 (aa)	-	UPI000C2F8104
ENSTSYT00000049449	SMARCA1-201	3213	XM_008070440	ENSTSYP00000013921	1070 (aa)	XP_008068631	UPI000C2F3779
ENSTSYT00000038186	SMARCA1-202	3177	XM_008070441	ENSTSYP00000032455	1058 (aa)	XP_008068632	UPI000C2F3A2A
ENSTSYT00000041219	SMARCA1-205	3722	-	ENSTSYP00000021596	500 (aa)	-	UPI000C2F6635

Gene Model

Click here to download ENSTSYG00000004240's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTSYG00000004240's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTSYG00000004240	SMARCA1	94	86.758	ENSTSYG00000009954	SMARCA5	98	85.729
ENSTSYG00000004240	SMARCA1	56	43.286	ENSTSYG00000003005	CHD1L	83	45.122
ENSTSYG00000004240	SMARCA1	54	30.795	ENSTSYG00000013234	-	65	30.795
ENSTSYG00000004240	SMARCA1	51	46.215	ENSTSYG00000005811	-	76	46.215

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTSYG00000004240	SMARCA1	98	98.269	ENSG00000102038	SMARCA1	95	98.900	Homo_sapiens
ENSTSYG00000004240	SMARCA1	94	84.697	ENSAPOG00000016035	smarca5	98	84.354	Acanthochromis_polyacanthus
ENSTSYG00000004240	SMARCA1	98	96.479	ENSAMEG00000015218	SMARCA1	95	97.431	Ailuropoda_melanoleuca
ENSTSYG00000004240	SMARCA1	86	85.880	ENSACIG00000016982	smarca5	99	84.487	Amphilophus_citrinellus
ENSTSYG00000004240	SMARCA1	94	84.697	ENSAOCG00000015578	smarca5	98	80.019	Amphiprion_ocellaris
ENSTSYG00000004240	SMARCA1	94	84.697	ENSAPEG00000011117	smarca5	99	84.316	Amphiprion_percula
ENSTSYG00000004240	SMARCA1	95	84.470	ENSATEG00000012894	smarca5	98	80.019	Anabas_testudineus
ENSTSYG00000004240	SMARCA1	94	93.446	ENSAPLG00000013149	SMARCA1	100	93.177	Anas_platyrhynchos
ENSTSYG00000004240	SMARCA1	98	91.437	ENSACAG00000011376	SMARCA1	95	91.500	Anolis_carolinensis
ENSTSYG00000004240	SMARCA1	98	92.857	ENSANAG00000023098	SMARCA1	97	91.275	Aotus_nancymaae
ENSTSYG00000004240	SMARCA1	94	84.688	ENSACLG00000025356	smarca5	98	80.405	Astatotilapia_calliptera
ENSTSYG00000004240	SMARCA1	91	89.216	ENSAMXG00000011227	smarca1	99	90.424	Astyanax_mexicanus
ENSTSYG00000004240	SMARCA1	94	85.000	ENSAMXG00000005709	smarca5	94	84.103	Astyanax_mexicanus
ENSTSYG00000004240	SMARCA1	98	97.149	ENSBTAG00000002292	SMARCA1	96	96.127	Bos_taurus
ENSTSYG00000004240	SMARCA1	94	64.546	WBGene00002169	isw-1	97	63.370	Caenorhabditis_elegans
ENSTSYG00000004240	SMARCA1	98	98.065	ENSCJAG00000002868	SMARCA1	95	98.700	Callithrix_jacchus
ENSTSYG00000004240	SMARCA1	98	87.262	ENSCAFG00000018673	SMARCA1	99	88.588	Canis_familiaris
ENSTSYG00000004240	SMARCA1	98	97.963	ENSCAFG00020001751	SMARCA1	95	98.600	Canis_lupus_dingo
ENSTSYG00000004240	SMARCA1	98	97.251	ENSCHIG00000009837	SMARCA1	94	97.900	Capra_hircus
ENSTSYG00000004240	SMARCA1	98	96.951	ENSCPOG00000013601	SMARCA1	95	97.371	Cavia_porcellus
ENSTSYG00000004240	SMARCA1	98	94.807	ENSCCAG00000030817	SMARCA1	97	93.193	Cebus_capucinus
ENSTSYG00000004240	SMARCA1	99	98.281	ENSCATG00000015921	SMARCA1	95	98.814	Cercocebus_atys
ENSTSYG00000004240	SMARCA1	98	96.640	ENSCLAG00000002171	SMARCA1	95	97.300	Chinchilla_lanigera
ENSTSYG00000004240	SMARCA1	98	98.167	ENSCSAG00000008460	SMARCA1	95	98.800	Chlorocebus_sabaeus
ENSTSYG00000004240	SMARCA1	98	92.089	ENSCPBG00000001146	SMARCA1	95	93.372	Chrysemys_picta_bellii
ENSTSYG00000004240	SMARCA1	94	74.658	ENSCING00000004110	swi/snf	97	73.695	Ciona_intestinalis
ENSTSYG00000004240	SMARCA1	95	73.777	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSTSYG00000004240	SMARCA1	98	98.371	ENSCANG00000007183	SMARCA1	95	99.000	Colobus_angolensis_palliatus
ENSTSYG00000004240	SMARCA1	98	95.918	ENSCGRG00001010776	Smarca1	94	96.500	Cricetulus_griseus_chok1gshd
ENSTSYG00000004240	SMARCA1	99	95.960	ENSCGRG00000015301	Smarca1	99	95.960	Cricetulus_griseus_crigri
ENSTSYG00000004240	SMARCA1	96	84.254	ENSCSEG00000000328	smarca5	95	83.030	Cynoglossus_semilaevis
ENSTSYG00000004240	SMARCA1	94	84.055	ENSCVAG00000008668	smarca5	99	83.863	Cyprinodon_variegatus
ENSTSYG00000004240	SMARCA1	94	84.574	ENSDARG00000052348	smarca5	94	83.590	Danio_rerio
ENSTSYG00000004240	SMARCA1	97	85.757	ENSDARG00000012776	smarca1	99	83.493	Danio_rerio
ENSTSYG00000004240	SMARCA1	98	95.829	ENSDNOG00000004315	SMARCA1	94	96.520	Dasypus_novemcinctus
ENSTSYG00000004240	SMARCA1	99	96.259	ENSDORG00000009270	Smarca1	95	96.259	Dipodomys_ordii
ENSTSYG00000004240	SMARCA1	95	73.931	FBgn0011604	Iswi	98	72.387	Drosophila_melanogaster
ENSTSYG00000004240	SMARCA1	82	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSTSYG00000004240	SMARCA1	93	82.158	ENSEBUG00000001239	smarca5	96	81.001	Eptatretus_burgeri
ENSTSYG00000004240	SMARCA1	97	93.750	ENSEASG00005008218	SMARCA1	100	93.232	Equus_asinus_asinus
ENSTSYG00000004240	SMARCA1	98	97.760	ENSECAG00000012106	SMARCA1	94	98.400	Equus_caballus
ENSTSYG00000004240	SMARCA1	80	97.342	ENSEEUG00000014927	SMARCA1	83	97.351	Erinaceus_europaeus
ENSTSYG00000004240	SMARCA1	96	87.280	ENSELUG00000010515	smarca1	98	86.927	Esox_lucius
ENSTSYG00000004240	SMARCA1	98	97.862	ENSFCAG00000018496	SMARCA1	95	98.518	Felis_catus
ENSTSYG00000004240	SMARCA1	91	93.633	ENSFALG00000000209	SMARCA1	98	93.750	Ficedula_albicollis
ENSTSYG00000004240	SMARCA1	99	96.000	ENSFDAG00000009818	SMARCA1	97	97.674	Fukomys_damarensis
ENSTSYG00000004240	SMARCA1	94	84.688	ENSFHEG00000007687	smarca5	94	83.232	Fundulus_heteroclitus
ENSTSYG00000004240	SMARCA1	96	92.642	ENSGALG00000008431	SMARCA1	97	92.923	Gallus_gallus
ENSTSYG00000004240	SMARCA1	94	84.477	ENSGAFG00000017731	smarca5	95	83.030	Gambusia_affinis
ENSTSYG00000004240	SMARCA1	94	93.552	ENSGAGG00000023575	SMARCA1	100	93.416	Gopherus_agassizii
ENSTSYG00000004240	SMARCA1	74	96.000	ENSGGOG00000012841	-	98	96.000	Gorilla_gorilla
ENSTSYG00000004240	SMARCA1	98	96.334	ENSHGLG00000003080	SMARCA1	95	96.900	Heterocephalus_glaber_female
ENSTSYG00000004240	SMARCA1	97	96.626	ENSHGLG00100001102	SMARCA1	100	96.503	Heterocephalus_glaber_male
ENSTSYG00000004240	SMARCA1	94	84.411	ENSHCOG00000005458	smarca5	98	79.981	Hippocampus_comes
ENSTSYG00000004240	SMARCA1	94	84.362	ENSIPUG00000005229	SMARCA5	99	80.569	Ictalurus_punctatus
ENSTSYG00000004240	SMARCA1	97	86.988	ENSIPUG00000016905	Smarca1	99	87.130	Ictalurus_punctatus
ENSTSYG00000004240	SMARCA1	99	96.489	ENSSTOG00000014524	SMARCA1	95	98.100	Ictidomys_tridecemlineatus
ENSTSYG00000004240	SMARCA1	99	96.360	ENSJJAG00000002593	Smarca1	95	96.517	Jaculus_jaculus
ENSTSYG00000004240	SMARCA1	94	84.730	ENSKMAG00000003777	smarca5	98	80.212	Kryptolebias_marmoratus
ENSTSYG00000004240	SMARCA1	93	83.422	ENSLBEG00000013295	SMARCA1	100	84.829	Labrus_bergylta
ENSTSYG00000004240	SMARCA1	95	83.351	ENSLBEG00000018112	smarca5	98	79.633	Labrus_bergylta
ENSTSYG00000004240	SMARCA1	98	90.061	ENSLACG00000016697	SMARCA1	98	90.500	Latimeria_chalumnae
ENSTSYG00000004240	SMARCA1	96	90.000	ENSLOCG00000014591	smarca1	97	89.157	Lepisosteus_oculatus
ENSTSYG00000004240	SMARCA1	99	96.468	ENSLAFG00000000896	SMARCA1	100	96.521	Loxodonta_africana
ENSTSYG00000004240	SMARCA1	99	98.584	ENSMFAG00000002117	SMARCA1	98	98.584	Macaca_fascicularis
ENSTSYG00000004240	SMARCA1	99	98.281	ENSMMUG00000008818	SMARCA1	99	98.429	Macaca_mulatta
ENSTSYG00000004240	SMARCA1	99	98.584	ENSMNEG00000041768	SMARCA1	98	98.584	Macaca_nemestrina
ENSTSYG00000004240	SMARCA1	98	98.167	ENSMLEG00000043198	SMARCA1	95	98.800	Mandrillus_leucophaeus
ENSTSYG00000004240	SMARCA1	94	84.688	ENSMAMG00000014294	smarca5	96	82.700	Mastacembelus_armatus
ENSTSYG00000004240	SMARCA1	94	84.688	ENSMZEG00005009369	smarca5	98	80.405	Maylandia_zebra
ENSTSYG00000004240	SMARCA1	96	91.318	ENSMGAG00000007042	SMARCA1	99	91.304	Meleagris_gallopavo
ENSTSYG00000004240	SMARCA1	99	96.364	ENSMAUG00000008133	Smarca1	95	96.364	Mesocricetus_auratus
ENSTSYG00000004240	SMARCA1	98	97.862	ENSMICG00000015768	SMARCA1	96	97.556	Microcebus_murinus
ENSTSYG00000004240	SMARCA1	98	96.323	ENSMOCG00000009464	Smarca1	95	95.920	Microtus_ochrogaster
ENSTSYG00000004240	SMARCA1	95	81.990	ENSMMOG00000005547	smarca5	99	81.212	Mola_mola
ENSTSYG00000004240	SMARCA1	98	90.854	ENSMODG00000013187	-	99	88.707	Monodelphis_domestica
ENSTSYG00000004240	SMARCA1	96	83.179	ENSMALG00000002081	smarca5	97	83.025	Monopterus_albus
ENSTSYG00000004240	SMARCA1	99	96.566	MGP_CAROLIEiJ_G0033034	Smarca1	95	96.566	Mus_caroli
ENSTSYG00000004240	SMARCA1	99	96.566	ENSMUSG00000031099	Smarca1	95	96.566	Mus_musculus
ENSTSYG00000004240	SMARCA1	99	96.465	MGP_PahariEiJ_G0031579	Smarca1	95	96.465	Mus_pahari
ENSTSYG00000004240	SMARCA1	99	96.667	MGP_SPRETEiJ_G0034192	Smarca1	95	96.667	Mus_spretus
ENSTSYG00000004240	SMARCA1	98	96.479	ENSMPUG00000017423	SMARCA1	91	96.699	Mustela_putorius_furo
ENSTSYG00000004240	SMARCA1	98	94.478	ENSMLUG00000029614	SMARCA1	95	95.365	Myotis_lucifugus
ENSTSYG00000004240	SMARCA1	99	97.677	ENSNGAG00000006492	Smarca1	95	97.677	Nannospalax_galili
ENSTSYG00000004240	SMARCA1	94	84.794	ENSNBRG00000004463	smarca5	99	83.333	Neolamprologus_brichardi
ENSTSYG00000004240	SMARCA1	99	97.376	ENSNLEG00000015179	SMARCA1	99	97.376	Nomascus_leucogenys
ENSTSYG00000004240	SMARCA1	94	81.381	ENSMEUG00000008819	SMARCA1	100	81.828	Notamacropus_eugenii
ENSTSYG00000004240	SMARCA1	99	95.205	ENSODEG00000012163	SMARCA1	95	96.100	Octodon_degus
ENSTSYG00000004240	SMARCA1	94	84.794	ENSONIG00000009993	smarca5	98	80.502	Oreochromis_niloticus
ENSTSYG00000004240	SMARCA1	94	93.770	ENSOANG00000002862	SMARCA1	100	93.519	Ornithorhynchus_anatinus
ENSTSYG00000004240	SMARCA1	98	96.232	ENSOCUG00000001047	SMARCA1	95	96.800	Oryctolagus_cuniculus
ENSTSYG00000004240	SMARCA1	94	84.517	ENSORLG00000021998	smarca5	95	83.030	Oryzias_latipes
ENSTSYG00000004240	SMARCA1	94	84.624	ENSORLG00020017679	smarca5	95	83.131	Oryzias_latipes_hni
ENSTSYG00000004240	SMARCA1	94	84.517	ENSORLG00015017210	smarca5	95	82.929	Oryzias_latipes_hsok
ENSTSYG00000004240	SMARCA1	94	84.517	ENSOMEG00000000086	smarca5	95	82.929	Oryzias_melastigma
ENSTSYG00000004240	SMARCA1	99	96.503	ENSOGAG00000004399	SMARCA1	96	96.624	Otolemur_garnettii
ENSTSYG00000004240	SMARCA1	98	96.076	ENSOARG00000014638	SMARCA1	100	98.163	Ovis_aries
ENSTSYG00000004240	SMARCA1	98	98.269	ENSPPAG00000034647	SMARCA1	95	98.900	Pan_paniscus
ENSTSYG00000004240	SMARCA1	98	97.862	ENSPPRG00000008929	SMARCA1	95	98.518	Panthera_pardus
ENSTSYG00000004240	SMARCA1	98	95.604	ENSPTIG00000000915	SMARCA1	98	96.562	Panthera_tigris_altaica
ENSTSYG00000004240	SMARCA1	99	98.281	ENSPTRG00000049876	SMARCA1	95	98.814	Pan_troglodytes
ENSTSYG00000004240	SMARCA1	98	98.269	ENSPANG00000003871	SMARCA1	95	98.900	Papio_anubis
ENSTSYG00000004240	SMARCA1	95	87.933	ENSPKIG00000013411	smarca1	96	88.186	Paramormyrops_kingsleyae
ENSTSYG00000004240	SMARCA1	98	91.239	ENSPSIG00000010101	SMARCA1	100	93.107	Pelodiscus_sinensis
ENSTSYG00000004240	SMARCA1	99	96.970	ENSPEMG00000017503	Smarca1	95	96.970	Peromyscus_maniculatus_bairdii
ENSTSYG00000004240	SMARCA1	99	91.296	ENSPCIG00000015460	SMARCA1	98	92.000	Phascolarctos_cinereus
ENSTSYG00000004240	SMARCA1	94	84.730	ENSPFOG00000007649	smarca5	95	83.030	Poecilia_formosa
ENSTSYG00000004240	SMARCA1	94	84.730	ENSPLAG00000003363	smarca5	95	83.030	Poecilia_latipinna
ENSTSYG00000004240	SMARCA1	94	84.624	ENSPMEG00000019849	smarca5	95	82.929	Poecilia_mexicana
ENSTSYG00000004240	SMARCA1	94	84.624	ENSPREG00000023250	smarca5	95	82.929	Poecilia_reticulata
ENSTSYG00000004240	SMARCA1	98	95.408	ENSPPYG00000020703	SMARCA1	95	96.000	Pongo_abelii
ENSTSYG00000004240	SMARCA1	81	90.909	ENSPCOG00000020722	SMARCA1	94	93.501	Propithecus_coquereli
ENSTSYG00000004240	SMARCA1	93	95.536	ENSPVAG00000003805	SMARCA1	91	97.169	Pteropus_vampyrus
ENSTSYG00000004240	SMARCA1	59	83.469	ENSPNYG00000012299	smarca5	91	82.842	Pundamilia_nyererei
ENSTSYG00000004240	SMARCA1	98	96.029	ENSRNOG00000003762	Smarca1	95	96.700	Rattus_norvegicus
ENSTSYG00000004240	SMARCA1	98	98.371	ENSRROG00000034167	SMARCA1	95	99.000	Rhinopithecus_roxellana
ENSTSYG00000004240	SMARCA1	98	97.080	ENSSBOG00000020641	SMARCA1	100	98.980	Saimiri_boliviensis_boliviensis
ENSTSYG00000004240	SMARCA1	95	86.421	ENSSHAG00000013518	SMARCA1	99	86.331	Sarcophilus_harrisii
ENSTSYG00000004240	SMARCA1	96	83.229	ENSSFOG00015016794	smarca5	100	83.505	Scleropages_formosus
ENSTSYG00000004240	SMARCA1	96	88.773	ENSSFOG00015009043	smarca1	98	87.876	Scleropages_formosus
ENSTSYG00000004240	SMARCA1	95	83.298	ENSSMAG00000004801	smarca5	95	82.472	Scophthalmus_maximus
ENSTSYG00000004240	SMARCA1	94	84.161	ENSSDUG00000020690	smarca5	96	82.727	Seriola_dumerili
ENSTSYG00000004240	SMARCA1	94	84.161	ENSSLDG00000025190	smarca5	96	82.727	Seriola_lalandi_dorsalis
ENSTSYG00000004240	SMARCA1	85	96.809	ENSSARG00000000842	SMARCA1	87	96.809	Sorex_araneus
ENSTSYG00000004240	SMARCA1	99	91.001	ENSSPUG00000000590	SMARCA1	97	89.526	Sphenodon_punctatus
ENSTSYG00000004240	SMARCA1	94	84.372	ENSSPAG00000002894	smarca5	97	84.354	Stegastes_partitus
ENSTSYG00000004240	SMARCA1	98	97.253	ENSSSCG00000012649	SMARCA1	94	98.150	Sus_scrofa
ENSTSYG00000004240	SMARCA1	94	93.340	ENSTGUG00000003899	-	100	92.872	Taeniopygia_guttata
ENSTSYG00000004240	SMARCA1	94	84.161	ENSTRUG00000014094	smarca5	98	80.019	Takifugu_rubripes
ENSTSYG00000004240	SMARCA1	94	83.422	ENSTNIG00000017717	smarca5	94	81.818	Tetraodon_nigroviridis
ENSTSYG00000004240	SMARCA1	90	96.048	ENSTBEG00000014973	SMARCA1	99	91.304	Tupaia_belangeri
ENSTSYG00000004240	SMARCA1	98	93.360	ENSTTRG00000006168	SMARCA1	99	95.015	Tursiops_truncatus
ENSTSYG00000004240	SMARCA1	98	97.352	ENSUAMG00000020201	SMARCA1	95	98.000	Ursus_americanus
ENSTSYG00000004240	SMARCA1	99	93.428	ENSUMAG00000004073	SMARCA1	96	98.293	Ursus_maritimus
ENSTSYG00000004240	SMARCA1	78	99.026	ENSVPAG00000010492	-	85	99.026	Vicugna_pacos
ENSTSYG00000004240	SMARCA1	98	97.961	ENSVVUG00000008878	SMARCA1	100	97.921	Vulpes_vulpes
ENSTSYG00000004240	SMARCA1	96	90.010	ENSXETG00000001526	smarca1	99	89.447	Xenopus_tropicalis
ENSTSYG00000004240	SMARCA1	94	84.372	ENSXCOG00000011170	smarca5	98	82.929	Xiphophorus_couchianus
ENSTSYG00000004240	SMARCA1	94	84.372	ENSXMAG00000009678	smarca5	98	84.858	Xiphophorus_maculatus