EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTSYG00000004739 (Gene tree)
Gene ID: 103258509
Gene Symbol: SF3A1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Carlito_syrichta
Status: putative
Strand: Minus strand
Length: 22673 bases
Position: chrKE938565.1:197984-220656
Accession: 103258509
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTSYP00000004339	PRP21_like_P	PF12230.8	9.6e-52	1	1
ENSTSYP00000004339	Surp	PF01805.20	7.3e-46	1	2
ENSTSYP00000004339	Surp	PF01805.20	7.3e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTSYT00000004746	SF3A1-201	2909	XM_008056171	ENSTSYP00000004339	793 (aa)	XP_008054362	A0A1U7TMV9

Gene Model

Click here to download ENSTSYG00000004739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTSYG00000004739's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTSYG00000004739	SF3A1	100	98.991	ENSG00000099995	SF3A1	100	98.991	Homo_sapiens
ENSTSYG00000004739	SF3A1	100	83.522	ENSAPOG00000020465	sf3a1	99	85.161	Acanthochromis_polyacanthus
ENSTSYG00000004739	SF3A1	100	98.994	ENSAMEG00000007737	SF3A1	100	98.994	Ailuropoda_melanoleuca
ENSTSYG00000004739	SF3A1	100	84.528	ENSACIG00000020672	sf3a1	98	86.068	Amphilophus_citrinellus
ENSTSYG00000004739	SF3A1	100	83.250	ENSAOCG00000003060	sf3a1	99	85.419	Amphiprion_ocellaris
ENSTSYG00000004739	SF3A1	100	83.375	ENSAPEG00000010735	sf3a1	99	85.548	Amphiprion_percula
ENSTSYG00000004739	SF3A1	96	85.938	ENSATEG00000021201	sf3a1	98	85.419	Anabas_testudineus
ENSTSYG00000004739	SF3A1	95	94.188	ENSAPLG00000009057	SF3A1	99	93.290	Anas_platyrhynchos
ENSTSYG00000004739	SF3A1	100	85.714	ENSACAG00000009415	SF3A1	100	87.069	Anolis_carolinensis
ENSTSYG00000004739	SF3A1	100	99.117	ENSANAG00000032045	SF3A1	100	99.117	Aotus_nancymaae
ENSTSYG00000004739	SF3A1	100	84.355	ENSACLG00000012622	sf3a1	99	85.917	Astatotilapia_calliptera
ENSTSYG00000004739	SF3A1	99	83.186	ENSAMXG00000005382	sf3a1	98	84.735	Astyanax_mexicanus
ENSTSYG00000004739	SF3A1	100	99.369	ENSBTAG00000003390	SF3A1	100	99.369	Bos_taurus
ENSTSYG00000004739	SF3A1	84	43.627	WBGene00004188	prp-21	94	43.682	Caenorhabditis_elegans
ENSTSYG00000004739	SF3A1	100	98.991	ENSCJAG00000010370	SF3A1	100	98.991	Callithrix_jacchus
ENSTSYG00000004739	SF3A1	100	99.369	ENSCAFG00000012559	SF3A1	100	99.369	Canis_familiaris
ENSTSYG00000004739	SF3A1	100	99.369	ENSCAFG00020000838	SF3A1	100	99.369	Canis_lupus_dingo
ENSTSYG00000004739	SF3A1	100	99.243	ENSCHIG00000018642	SF3A1	100	99.243	Capra_hircus
ENSTSYG00000004739	SF3A1	94	81.575	ENSCAPG00000015414	SF3A1	98	81.575	Cavia_aperea
ENSTSYG00000004739	SF3A1	100	99.117	ENSCPOG00000014589	SF3A1	100	99.117	Cavia_porcellus
ENSTSYG00000004739	SF3A1	100	99.117	ENSCCAG00000032006	SF3A1	100	99.117	Cebus_capucinus
ENSTSYG00000004739	SF3A1	100	99.243	ENSCATG00000029241	SF3A1	100	99.243	Cercocebus_atys
ENSTSYG00000004739	SF3A1	100	98.739	ENSCLAG00000006508	SF3A1	100	98.739	Chinchilla_lanigera
ENSTSYG00000004739	SF3A1	100	99.117	ENSCSAG00000009470	SF3A1	100	99.117	Chlorocebus_sabaeus
ENSTSYG00000004739	SF3A1	61	99.083	ENSCHOG00000005201	SF3A1	69	99.083	Choloepus_hoffmanni
ENSTSYG00000004739	SF3A1	100	90.932	ENSCPBG00000007595	SF3A1	100	91.058	Chrysemys_picta_bellii
ENSTSYG00000004739	SF3A1	94	52.249	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSTSYG00000004739	SF3A1	96	51.613	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSTSYG00000004739	SF3A1	100	99.117	ENSCANG00000033564	SF3A1	100	99.117	Colobus_angolensis_palliatus
ENSTSYG00000004739	SF3A1	100	98.739	ENSCGRG00001008933	Sf3a1	100	98.739	Cricetulus_griseus_chok1gshd
ENSTSYG00000004739	SF3A1	100	98.739	ENSCGRG00000006127	Sf3a1	100	98.739	Cricetulus_griseus_crigri
ENSTSYG00000004739	SF3A1	99	81.853	ENSCSEG00000010792	sf3a1	98	82.965	Cynoglossus_semilaevis
ENSTSYG00000004739	SF3A1	100	83.145	ENSCVAG00000004560	sf3a1	98	84.375	Cyprinodon_variegatus
ENSTSYG00000004739	SF3A1	100	82.286	ENSDARG00000041887	sf3a1	97	84.615	Danio_rerio
ENSTSYG00000004739	SF3A1	100	98.868	ENSDNOG00000010629	SF3A1	100	98.868	Dasypus_novemcinctus
ENSTSYG00000004739	SF3A1	100	99.496	ENSDORG00000005613	Sf3a1	100	99.496	Dipodomys_ordii
ENSTSYG00000004739	SF3A1	79	61.495	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSTSYG00000004739	SF3A1	89	95.869	ENSETEG00000017194	SF3A1	100	95.869	Echinops_telfairi
ENSTSYG00000004739	SF3A1	100	65.176	ENSEBUG00000001285	sf3a1	96	67.284	Eptatretus_burgeri
ENSTSYG00000004739	SF3A1	100	99.496	ENSEASG00005010254	SF3A1	100	99.496	Equus_asinus_asinus
ENSTSYG00000004739	SF3A1	100	99.496	ENSECAG00000023962	SF3A1	100	99.496	Equus_caballus
ENSTSYG00000004739	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSTSYG00000004739	SF3A1	100	82.331	ENSELUG00000022578	sf3a1	97	83.464	Esox_lucius
ENSTSYG00000004739	SF3A1	100	99.117	ENSFCAG00000011932	SF3A1	100	99.117	Felis_catus
ENSTSYG00000004739	SF3A1	95	93.254	ENSFALG00000006944	SF3A1	100	91.814	Ficedula_albicollis
ENSTSYG00000004739	SF3A1	100	99.369	ENSFDAG00000009560	SF3A1	100	99.369	Fukomys_damarensis
ENSTSYG00000004739	SF3A1	100	84.025	ENSFHEG00000010866	sf3a1	98	85.286	Fundulus_heteroclitus
ENSTSYG00000004739	SF3A1	100	81.234	ENSGMOG00000016024	sf3a1	97	81.453	Gadus_morhua
ENSTSYG00000004739	SF3A1	95	94.180	ENSGALG00000007937	SF3A1	100	92.317	Gallus_gallus
ENSTSYG00000004739	SF3A1	100	83.270	ENSGAFG00000009111	sf3a1	97	84.967	Gambusia_affinis
ENSTSYG00000004739	SF3A1	100	82.242	ENSGACG00000011893	sf3a1	97	83.377	Gasterosteus_aculeatus
ENSTSYG00000004739	SF3A1	96	91.196	ENSGAGG00000000762	SF3A1	99	91.327	Gopherus_agassizii
ENSTSYG00000004739	SF3A1	100	98.991	ENSGGOG00000012631	SF3A1	100	98.991	Gorilla_gorilla
ENSTSYG00000004739	SF3A1	100	84.355	ENSHBUG00000015795	sf3a1	99	85.917	Haplochromis_burtoni
ENSTSYG00000004739	SF3A1	100	99.496	ENSHGLG00000007907	SF3A1	100	99.496	Heterocephalus_glaber_female
ENSTSYG00000004739	SF3A1	100	99.496	ENSHGLG00100013799	SF3A1	100	99.496	Heterocephalus_glaber_male
ENSTSYG00000004739	SF3A1	100	80.377	ENSHCOG00000015423	sf3a1	99	80.774	Hippocampus_comes
ENSTSYG00000004739	SF3A1	96	82.422	ENSIPUG00000002470	sf3a1	98	82.682	Ictalurus_punctatus
ENSTSYG00000004739	SF3A1	100	99.496	ENSSTOG00000013892	SF3A1	100	99.496	Ictidomys_tridecemlineatus
ENSTSYG00000004739	SF3A1	100	99.244	ENSJJAG00000022566	Sf3a1	100	99.244	Jaculus_jaculus
ENSTSYG00000004739	SF3A1	100	82.642	ENSKMAG00000002400	sf3a1	98	84.635	Kryptolebias_marmoratus
ENSTSYG00000004739	SF3A1	100	82.642	ENSLBEG00000022974	sf3a1	99	83.226	Labrus_bergylta
ENSTSYG00000004739	SF3A1	100	86.951	ENSLACG00000003565	SF3A1	97	88.281	Latimeria_chalumnae
ENSTSYG00000004739	SF3A1	100	85.088	ENSLOCG00000008251	sf3a1	97	86.883	Lepisosteus_oculatus
ENSTSYG00000004739	SF3A1	98	62.293	ENSLAFG00000026032	-	97	62.725	Loxodonta_africana
ENSTSYG00000004739	SF3A1	100	99.117	ENSLAFG00000000448	SF3A1	100	99.117	Loxodonta_africana
ENSTSYG00000004739	SF3A1	100	98.991	ENSMFAG00000031979	SF3A1	100	98.991	Macaca_fascicularis
ENSTSYG00000004739	SF3A1	100	98.991	ENSMMUG00000005547	SF3A1	100	98.991	Macaca_mulatta
ENSTSYG00000004739	SF3A1	100	98.865	ENSMNEG00000037229	SF3A1	100	98.865	Macaca_nemestrina
ENSTSYG00000004739	SF3A1	100	99.117	ENSMLEG00000041908	SF3A1	100	99.117	Mandrillus_leucophaeus
ENSTSYG00000004739	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	97	85.899	Mastacembelus_armatus
ENSTSYG00000004739	SF3A1	100	84.355	ENSMZEG00005009633	sf3a1	99	85.917	Maylandia_zebra
ENSTSYG00000004739	SF3A1	95	94.180	ENSMGAG00000001330	SF3A1	99	93.282	Meleagris_gallopavo
ENSTSYG00000004739	SF3A1	92	95.355	ENSMAUG00000020317	Sf3a1	94	95.355	Mesocricetus_auratus
ENSTSYG00000004739	SF3A1	100	99.117	ENSMICG00000010038	SF3A1	100	99.117	Microcebus_murinus
ENSTSYG00000004739	SF3A1	100	98.865	ENSMOCG00000008438	Sf3a1	100	98.865	Microtus_ochrogaster
ENSTSYG00000004739	SF3A1	100	81.509	ENSMMOG00000015588	sf3a1	97	82.422	Mola_mola
ENSTSYG00000004739	SF3A1	100	97.856	ENSMODG00000009270	SF3A1	100	97.856	Monodelphis_domestica
ENSTSYG00000004739	SF3A1	100	84.509	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSTSYG00000004739	SF3A1	100	98.235	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.235	Mus_caroli
ENSTSYG00000004739	SF3A1	100	98.235	ENSMUSG00000002129	Sf3a1	100	98.235	Mus_musculus
ENSTSYG00000004739	SF3A1	100	98.235	MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	Mus_pahari
ENSTSYG00000004739	SF3A1	100	98.235	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.235	Mus_spretus
ENSTSYG00000004739	SF3A1	100	99.369	ENSMPUG00000013144	SF3A1	100	99.369	Mustela_putorius_furo
ENSTSYG00000004739	SF3A1	100	99.243	ENSMLUG00000002139	SF3A1	100	99.243	Myotis_lucifugus
ENSTSYG00000004739	SF3A1	100	99.117	ENSNGAG00000016977	Sf3a1	100	99.117	Nannospalax_galili
ENSTSYG00000004739	SF3A1	100	83.770	ENSNBRG00000016642	sf3a1	96	86.825	Neolamprologus_brichardi
ENSTSYG00000004739	SF3A1	100	99.117	ENSNLEG00000003686	SF3A1	100	99.117	Nomascus_leucogenys
ENSTSYG00000004739	SF3A1	96	88.158	ENSMEUG00000008741	SF3A1	100	88.158	Notamacropus_eugenii
ENSTSYG00000004739	SF3A1	100	98.739	ENSOPRG00000016636	SF3A1	100	98.739	Ochotona_princeps
ENSTSYG00000004739	SF3A1	100	98.991	ENSODEG00000002571	SF3A1	100	98.991	Octodon_degus
ENSTSYG00000004739	SF3A1	100	84.250	ENSONIG00000010848	sf3a1	99	85.290	Oreochromis_niloticus
ENSTSYG00000004739	SF3A1	100	99.369	ENSOCUG00000007633	SF3A1	100	99.369	Oryctolagus_cuniculus
ENSTSYG00000004739	SF3A1	96	82.021	ENSORLG00000013050	sf3a1	98	83.827	Oryzias_latipes
ENSTSYG00000004739	SF3A1	99	80.506	ENSORLG00020003236	sf3a1	94	83.962	Oryzias_latipes_hni
ENSTSYG00000004739	SF3A1	100	82.390	ENSORLG00015017411	sf3a1	99	84.000	Oryzias_latipes_hsok
ENSTSYG00000004739	SF3A1	100	82.893	ENSOMEG00000013362	sf3a1	99	83.742	Oryzias_melastigma
ENSTSYG00000004739	SF3A1	100	99.369	ENSOGAG00000012931	SF3A1	100	99.369	Otolemur_garnettii
ENSTSYG00000004739	SF3A1	100	97.478	ENSOARG00000006849	SF3A1	100	97.478	Ovis_aries
ENSTSYG00000004739	SF3A1	100	97.982	ENSPPAG00000041790	SF3A1	100	97.982	Pan_paniscus
ENSTSYG00000004739	SF3A1	100	99.117	ENSPPRG00000004391	SF3A1	100	99.117	Panthera_pardus
ENSTSYG00000004739	SF3A1	97	99.223	ENSPTIG00000000844	SF3A1	100	99.223	Panthera_tigris_altaica
ENSTSYG00000004739	SF3A1	100	98.991	ENSPTRG00000014240	SF3A1	100	98.991	Pan_troglodytes
ENSTSYG00000004739	SF3A1	100	99.117	ENSPANG00000020772	SF3A1	100	99.117	Papio_anubis
ENSTSYG00000004739	SF3A1	83	93.407	ENSPSIG00000012803	SF3A1	96	94.162	Pelodiscus_sinensis
ENSTSYG00000004739	SF3A1	96	84.162	ENSPMGG00000023096	sf3a1	100	84.162	Periophthalmus_magnuspinnatus
ENSTSYG00000004739	SF3A1	100	98.991	ENSPEMG00000009494	Sf3a1	100	98.991	Peromyscus_maniculatus_bairdii
ENSTSYG00000004739	SF3A1	69	77.858	ENSPMAG00000007139	-	90	77.757	Petromyzon_marinus
ENSTSYG00000004739	SF3A1	100	97.730	ENSPCIG00000022692	SF3A1	100	97.730	Phascolarctos_cinereus
ENSTSYG00000004739	SF3A1	100	75.377	ENSPFOG00000016768	sf3a1	93	79.048	Poecilia_formosa
ENSTSYG00000004739	SF3A1	100	83.668	ENSPLAG00000017268	sf3a1	97	85.229	Poecilia_latipinna
ENSTSYG00000004739	SF3A1	84	86.145	ENSPMEG00000019811	sf3a1	98	85.392	Poecilia_mexicana
ENSTSYG00000004739	SF3A1	100	83.794	ENSPREG00000010347	sf3a1	97	85.621	Poecilia_reticulata
ENSTSYG00000004739	SF3A1	100	99.117	ENSPPYG00000011707	SF3A1	100	99.117	Pongo_abelii
ENSTSYG00000004739	SF3A1	57	99.528	ENSPCAG00000003266	SF3A1	57	99.528	Procavia_capensis
ENSTSYG00000004739	SF3A1	100	99.117	ENSPCOG00000026630	SF3A1	100	99.117	Propithecus_coquereli
ENSTSYG00000004739	SF3A1	100	94.830	ENSPVAG00000017719	SF3A1	94	98.389	Pteropus_vampyrus
ENSTSYG00000004739	SF3A1	100	84.355	ENSPNYG00000018706	sf3a1	99	85.917	Pundamilia_nyererei
ENSTSYG00000004739	SF3A1	97	83.697	ENSPNAG00000003721	sf3a1	99	84.467	Pygocentrus_nattereri
ENSTSYG00000004739	SF3A1	100	98.613	ENSRNOG00000005218	Sf3a1	100	98.613	Rattus_norvegicus
ENSTSYG00000004739	SF3A1	100	98.991	ENSRBIG00000032167	SF3A1	100	98.991	Rhinopithecus_bieti
ENSTSYG00000004739	SF3A1	100	98.991	ENSRROG00000044908	SF3A1	100	98.991	Rhinopithecus_roxellana
ENSTSYG00000004739	SF3A1	97	95.220	ENSSBOG00000021960	SF3A1	100	99.409	Saimiri_boliviensis_boliviensis
ENSTSYG00000004739	SF3A1	97	95.084	ENSSHAG00000003666	SF3A1	98	95.213	Sarcophilus_harrisii
ENSTSYG00000004739	SF3A1	100	83.625	ENSSFOG00015004579	sf3a1	99	85.385	Scleropages_formosus
ENSTSYG00000004739	SF3A1	100	81.635	ENSSMAG00000004275	sf3a1	97	82.876	Scophthalmus_maximus
ENSTSYG00000004739	SF3A1	100	83.899	ENSSDUG00000022219	sf3a1	99	85.161	Seriola_dumerili
ENSTSYG00000004739	SF3A1	100	83.899	ENSSLDG00000012642	sf3a1	99	85.161	Seriola_lalandi_dorsalis
ENSTSYG00000004739	SF3A1	97	95.725	ENSSARG00000005960	SF3A1	100	95.725	Sorex_araneus
ENSTSYG00000004739	SF3A1	96	91.969	ENSSPUG00000018863	SF3A1	100	91.542	Sphenodon_punctatus
ENSTSYG00000004739	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	99	85.161	Stegastes_partitus
ENSTSYG00000004739	SF3A1	100	99.243	ENSSSCG00000010002	SF3A1	100	99.243	Sus_scrofa
ENSTSYG00000004739	SF3A1	95	94.063	ENSTGUG00000010547	SF3A1	99	93.515	Taeniopygia_guttata
ENSTSYG00000004739	SF3A1	100	81.384	ENSTRUG00000006118	sf3a1	97	82.092	Takifugu_rubripes
ENSTSYG00000004739	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	85.714	Tetraodon_nigroviridis
ENSTSYG00000004739	SF3A1	100	91.803	ENSTBEG00000012771	SF3A1	100	91.803	Tupaia_belangeri
ENSTSYG00000004739	SF3A1	100	99.244	ENSTTRG00000001535	SF3A1	100	99.244	Tursiops_truncatus
ENSTSYG00000004739	SF3A1	99	98.094	ENSUAMG00000006750	SF3A1	99	98.094	Ursus_americanus
ENSTSYG00000004739	SF3A1	99	98.469	ENSUMAG00000016665	SF3A1	99	98.469	Ursus_maritimus
ENSTSYG00000004739	SF3A1	100	99.369	ENSVVUG00000003075	SF3A1	100	99.369	Vulpes_vulpes
ENSTSYG00000004739	SF3A1	100	86.073	ENSXETG00000016144	sf3a1	100	85.571	Xenopus_tropicalis
ENSTSYG00000004739	SF3A1	100	83.019	ENSXCOG00000015653	sf3a1	97	84.706	Xiphophorus_couchianus
ENSTSYG00000004739	SF3A1	100	83.145	ENSXMAG00000002753	sf3a1	97	84.837	Xiphophorus_maculatus