EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTSYG00000006997 (Gene tree)
Gene ID: 103270496
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Carlito_syrichta
Status: putative
Strand: Minus strand
Length: 16268 bases
Position: chrKE944916.1:557304-573571
Accession: 103270496
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTSYP00000031012	HVSL	PF09749.9	2.7e-64	1	1
ENSTSYP00000027581	HVSL	PF09749.9	2.1e-52	1	2
ENSTSYP00000027581	HVSL	PF09749.9	2.1e-52	2	2
ENSTSYP00000006383	HVSL	PF09749.9	7.3e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTSYT00000033571	USB1-201	1770	XM_008068011	ENSTSYP00000031012	265 (aa)	XP_008066202	A0A1U7U1T1
ENSTSYT00000034068	USB1-202	1716	XM_008068012	ENSTSYP00000027581	247 (aa)	XP_008066203	A0A1U7U7Z6
ENSTSYT00000006974	USB1-203	477	-	ENSTSYP00000006383	158 (aa)	-	UPI000C2F8128

Gene Model

Click here to download ENSTSYG00000006997's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTSYG00000006997's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTSYG00000006997	USB1	100	89.811	ENSG00000103005	USB1	100	91.589	Homo_sapiens
ENSTSYG00000006997	USB1	98	47.670	ENSAPOG00000011942	usb1	81	51.982	Acanthochromis_polyacanthus
ENSTSYG00000006997	USB1	100	86.245	ENSAMEG00000017205	USB1	100	85.874	Ailuropoda_melanoleuca
ENSTSYG00000006997	USB1	85	53.097	ENSACIG00000012234	usb1	83	53.097	Amphilophus_citrinellus
ENSTSYG00000006997	USB1	86	52.863	ENSAOCG00000014831	usb1	80	52.863	Amphiprion_ocellaris
ENSTSYG00000006997	USB1	86	53.304	ENSAPEG00000000296	usb1	80	53.304	Amphiprion_percula
ENSTSYG00000006997	USB1	98	48.214	ENSATEG00000009348	usb1	99	48.214	Anabas_testudineus
ENSTSYG00000006997	USB1	85	68.282	ENSAPLG00000002756	USB1	100	68.722	Anas_platyrhynchos
ENSTSYG00000006997	USB1	86	62.009	ENSACAG00000015481	USB1	100	62.009	Anolis_carolinensis
ENSTSYG00000006997	USB1	100	89.434	ENSANAG00000035640	USB1	100	89.434	Aotus_nancymaae
ENSTSYG00000006997	USB1	85	52.679	ENSACLG00000020586	usb1	79	52.679	Astatotilapia_calliptera
ENSTSYG00000006997	USB1	85	49.778	ENSAMXG00000040146	usb1	75	49.778	Astyanax_mexicanus
ENSTSYG00000006997	USB1	100	83.774	ENSBTAG00000015758	USB1	100	83.774	Bos_taurus
ENSTSYG00000006997	USB1	100	90.189	ENSCJAG00000011733	USB1	100	90.189	Callithrix_jacchus
ENSTSYG00000006997	USB1	99	83.088	ENSCAFG00000008556	USB1	73	81.618	Canis_familiaris
ENSTSYG00000006997	USB1	99	83.459	ENSCAFG00020009263	USB1	99	83.459	Canis_lupus_dingo
ENSTSYG00000006997	USB1	100	83.396	ENSCHIG00000024290	USB1	100	83.396	Capra_hircus
ENSTSYG00000006997	USB1	88	70.259	ENSCAPG00000009057	USB1	100	71.028	Cavia_aperea
ENSTSYG00000006997	USB1	100	82.463	ENSCPOG00000014325	USB1	100	81.343	Cavia_porcellus
ENSTSYG00000006997	USB1	100	89.811	ENSCCAG00000022132	USB1	100	89.811	Cebus_capucinus
ENSTSYG00000006997	USB1	100	89.811	ENSCATG00000032174	USB1	100	89.811	Cercocebus_atys
ENSTSYG00000006997	USB1	66	89.773	ENSCLAG00000007363	USB1	100	89.773	Chinchilla_lanigera
ENSTSYG00000006997	USB1	100	90.943	ENSCSAG00000004783	USB1	100	90.943	Chlorocebus_sabaeus
ENSTSYG00000006997	USB1	92	64.490	ENSCPBG00000026943	USB1	100	61.649	Chrysemys_picta_bellii
ENSTSYG00000006997	USB1	84	30.962	ENSCING00000011490	-	86	30.962	Ciona_intestinalis
ENSTSYG00000006997	USB1	83	31.858	ENSCSAVG00000000894	-	81	31.858	Ciona_savignyi
ENSTSYG00000006997	USB1	100	90.189	ENSCANG00000037135	USB1	100	90.189	Colobus_angolensis_palliatus
ENSTSYG00000006997	USB1	100	83.582	ENSCGRG00001011243	USB1	100	83.582	Cricetulus_griseus_chok1gshd
ENSTSYG00000006997	USB1	100	83.582	ENSCGRG00000013252	USB1	100	83.582	Cricetulus_griseus_crigri
ENSTSYG00000006997	USB1	98	45.985	ENSCSEG00000013881	usb1	84	48.927	Cynoglossus_semilaevis
ENSTSYG00000006997	USB1	85	49.123	ENSCVAG00000009252	usb1	97	49.561	Cyprinodon_variegatus
ENSTSYG00000006997	USB1	85	50.000	ENSDARG00000003841	usb1	81	50.000	Danio_rerio
ENSTSYG00000006997	USB1	100	81.132	ENSDORG00000001888	Usb1	100	81.132	Dipodomys_ordii
ENSTSYG00000006997	USB1	77	40.476	FBgn0037713	CG16790	78	40.476	Drosophila_melanogaster
ENSTSYG00000006997	USB1	100	68.539	ENSETEG00000019682	USB1	100	68.539	Echinops_telfairi
ENSTSYG00000006997	USB1	84	49.099	ENSEBUG00000005889	usb1	78	49.099	Eptatretus_burgeri
ENSTSYG00000006997	USB1	100	86.792	ENSEASG00005005484	USB1	100	86.792	Equus_asinus_asinus
ENSTSYG00000006997	USB1	100	86.415	ENSECAG00000019493	USB1	91	86.415	Equus_caballus
ENSTSYG00000006997	USB1	100	62.642	ENSEEUG00000000154	USB1	100	62.642	Erinaceus_europaeus
ENSTSYG00000006997	USB1	86	46.930	ENSELUG00000010974	usb1	84	46.930	Esox_lucius
ENSTSYG00000006997	USB1	100	88.015	ENSFCAG00000002693	USB1	100	88.015	Felis_catus
ENSTSYG00000006997	USB1	100	59.854	ENSFALG00000006876	USB1	99	60.219	Ficedula_albicollis
ENSTSYG00000006997	USB1	100	84.644	ENSFDAG00000010052	USB1	100	84.644	Fukomys_damarensis
ENSTSYG00000006997	USB1	92	43.827	ENSFHEG00000012334	usb1	77	52.062	Fundulus_heteroclitus
ENSTSYG00000006997	USB1	84	50.673	ENSGMOG00000004228	usb1	99	50.673	Gadus_morhua
ENSTSYG00000006997	USB1	84	68.750	ENSGALG00000035604	USB1	91	67.532	Gallus_gallus
ENSTSYG00000006997	USB1	98	48.364	ENSGAFG00000021890	usb1	88	46.341	Gambusia_affinis
ENSTSYG00000006997	USB1	86	50.877	ENSGACG00000003257	usb1	82	50.877	Gasterosteus_aculeatus
ENSTSYG00000006997	USB1	100	62.774	ENSGAGG00000022572	USB1	100	61.538	Gopherus_agassizii
ENSTSYG00000006997	USB1	100	90.566	ENSGGOG00000017147	USB1	100	90.566	Gorilla_gorilla
ENSTSYG00000006997	USB1	86	52.863	ENSHBUG00000009823	usb1	99	48.746	Haplochromis_burtoni
ENSTSYG00000006997	USB1	100	85.019	ENSHGLG00000016078	USB1	98	85.019	Heterocephalus_glaber_female
ENSTSYG00000006997	USB1	100	85.019	ENSHGLG00100005562	USB1	98	85.019	Heterocephalus_glaber_male
ENSTSYG00000006997	USB1	82	53.917	ENSHCOG00000015633	usb1	86	53.363	Hippocampus_comes
ENSTSYG00000006997	USB1	98	45.361	ENSIPUG00000008601	usb1	78	51.786	Ictalurus_punctatus
ENSTSYG00000006997	USB1	100	85.714	ENSSTOG00000007548	USB1	100	86.447	Ictidomys_tridecemlineatus
ENSTSYG00000006997	USB1	100	86.517	ENSJJAG00000021859	Usb1	100	86.517	Jaculus_jaculus
ENSTSYG00000006997	USB1	96	47.471	ENSKMAG00000007200	usb1	80	51.101	Kryptolebias_marmoratus
ENSTSYG00000006997	USB1	75	51.256	ENSLBEG00000008452	usb1	64	51.579	Labrus_bergylta
ENSTSYG00000006997	USB1	88	53.086	ENSLACG00000000105	USB1	72	59.330	Latimeria_chalumnae
ENSTSYG00000006997	USB1	95	52.529	ENSLOCG00000000465	usb1	87	52.800	Lepisosteus_oculatus
ENSTSYG00000006997	USB1	100	64.815	ENSLAFG00000002267	USB1	100	64.074	Loxodonta_africana
ENSTSYG00000006997	USB1	100	90.189	ENSMFAG00000003926	USB1	100	90.189	Macaca_fascicularis
ENSTSYG00000006997	USB1	100	90.189	ENSMMUG00000022669	USB1	100	90.189	Macaca_mulatta
ENSTSYG00000006997	USB1	100	89.811	ENSMNEG00000042487	USB1	100	89.811	Macaca_nemestrina
ENSTSYG00000006997	USB1	100	90.189	ENSMLEG00000028756	USB1	100	90.189	Mandrillus_leucophaeus
ENSTSYG00000006997	USB1	98	48.387	ENSMAMG00000015092	usb1	83	51.502	Mastacembelus_armatus
ENSTSYG00000006997	USB1	85	52.679	ENSMZEG00005010008	usb1	99	48.746	Maylandia_zebra
ENSTSYG00000006997	USB1	100	83.895	ENSMAUG00000007832	Usb1	100	83.895	Mesocricetus_auratus
ENSTSYG00000006997	USB1	100	91.321	ENSMICG00000004900	USB1	100	91.321	Microcebus_murinus
ENSTSYG00000006997	USB1	100	84.270	ENSMOCG00000022647	Usb1	100	84.270	Microtus_ochrogaster
ENSTSYG00000006997	USB1	85	51.770	ENSMMOG00000000490	usb1	88	51.770	Mola_mola
ENSTSYG00000006997	USB1	100	65.934	ENSMODG00000014067	USB1	100	65.934	Monodelphis_domestica
ENSTSYG00000006997	USB1	95	49.801	ENSMALG00000005930	usb1	80	52.863	Monopterus_albus
ENSTSYG00000006997	USB1	100	82.022	MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	Mus_caroli
ENSTSYG00000006997	USB1	100	82.397	ENSMUSG00000031792	Usb1	100	84.071	Mus_musculus
ENSTSYG00000006997	USB1	100	82.397	MGP_PahariEiJ_G0023019	Usb1	100	83.761	Mus_pahari
ENSTSYG00000006997	USB1	100	81.648	MGP_SPRETEiJ_G0032540	Usb1	100	80.524	Mus_spretus
ENSTSYG00000006997	USB1	100	84.758	ENSMPUG00000004684	USB1	96	84.015	Mustela_putorius_furo
ENSTSYG00000006997	USB1	87	89.610	ENSMLUG00000007400	USB1	100	89.610	Myotis_lucifugus
ENSTSYG00000006997	USB1	100	84.758	ENSNGAG00000009703	Usb1	100	84.387	Nannospalax_galili
ENSTSYG00000006997	USB1	87	51.163	ENSNBRG00000008747	usb1	99	50.826	Neolamprologus_brichardi
ENSTSYG00000006997	USB1	100	87.975	ENSNLEG00000003340	USB1	100	90.400	Nomascus_leucogenys
ENSTSYG00000006997	USB1	94	57.051	ENSMEUG00000003328	-	100	57.051	Notamacropus_eugenii
ENSTSYG00000006997	USB1	63	91.176	ENSOPRG00000011803	USB1	72	91.176	Ochotona_princeps
ENSTSYG00000006997	USB1	100	81.273	ENSODEG00000016214	USB1	100	80.524	Octodon_degus
ENSTSYG00000006997	USB1	98	49.104	ENSONIG00000011063	usb1	81	52.423	Oreochromis_niloticus
ENSTSYG00000006997	USB1	85	72.444	ENSOANG00000012118	USB1	94	72.444	Ornithorhynchus_anatinus
ENSTSYG00000006997	USB1	94	46.586	ENSORLG00000012479	usb1	83	49.123	Oryzias_latipes
ENSTSYG00000006997	USB1	94	46.586	ENSORLG00020018671	usb1	84	49.123	Oryzias_latipes_hni
ENSTSYG00000006997	USB1	86	49.123	ENSORLG00015009679	usb1	84	49.123	Oryzias_latipes_hsok
ENSTSYG00000006997	USB1	86	49.123	ENSOMEG00000012930	usb1	82	49.123	Oryzias_melastigma
ENSTSYG00000006997	USB1	100	89.069	ENSOGAG00000003273	USB1	100	89.069	Otolemur_garnettii
ENSTSYG00000006997	USB1	95	81.818	ENSOARG00000001107	USB1	94	83.333	Ovis_aries
ENSTSYG00000006997	USB1	100	90.189	ENSPPAG00000042137	USB1	100	90.189	Pan_paniscus
ENSTSYG00000006997	USB1	100	88.015	ENSPPRG00000024797	USB1	100	88.015	Panthera_pardus
ENSTSYG00000006997	USB1	100	88.015	ENSPTIG00000007506	USB1	100	88.015	Panthera_tigris_altaica
ENSTSYG00000006997	USB1	100	89.474	ENSPTRG00000008172	USB1	100	92.523	Pan_troglodytes
ENSTSYG00000006997	USB1	100	90.189	ENSPANG00000025138	USB1	100	90.189	Papio_anubis
ENSTSYG00000006997	USB1	96	50.588	ENSPKIG00000015109	usb1	80	52.101	Paramormyrops_kingsleyae
ENSTSYG00000006997	USB1	85	51.556	ENSPSIG00000004305	USB1	100	51.570	Pelodiscus_sinensis
ENSTSYG00000006997	USB1	85	50.667	ENSPMGG00000017725	usb1	86	50.667	Periophthalmus_magnuspinnatus
ENSTSYG00000006997	USB1	100	82.353	ENSPEMG00000016183	Usb1	100	82.721	Peromyscus_maniculatus_bairdii
ENSTSYG00000006997	USB1	88	47.660	ENSPMAG00000000462	usb1	99	47.660	Petromyzon_marinus
ENSTSYG00000006997	USB1	98	48.188	ENSPFOG00000011130	usb1	82	51.754	Poecilia_formosa
ENSTSYG00000006997	USB1	98	47.464	ENSPLAG00000009820	usb1	82	50.877	Poecilia_latipinna
ENSTSYG00000006997	USB1	98	47.653	ENSPMEG00000006402	usb1	82	51.754	Poecilia_mexicana
ENSTSYG00000006997	USB1	92	43.827	ENSPREG00000001047	usb1	85	50.000	Poecilia_reticulata
ENSTSYG00000006997	USB1	95	86.905	ENSPPYG00000007401	USB1	100	86.905	Pongo_abelii
ENSTSYG00000006997	USB1	100	92.075	ENSPCOG00000022612	USB1	100	92.075	Propithecus_coquereli
ENSTSYG00000006997	USB1	100	83.396	ENSPVAG00000004613	USB1	100	83.396	Pteropus_vampyrus
ENSTSYG00000006997	USB1	98	48.302	ENSPNYG00000022262	usb1	99	48.746	Pundamilia_nyererei
ENSTSYG00000006997	USB1	85	50.000	ENSPNAG00000011736	usb1	76	50.000	Pygocentrus_nattereri
ENSTSYG00000006997	USB1	100	83.146	ENSRNOG00000013216	Usb1	100	82.022	Rattus_norvegicus
ENSTSYG00000006997	USB1	100	90.283	ENSRBIG00000044466	USB1	100	93.458	Rhinopithecus_bieti
ENSTSYG00000006997	USB1	100	90.566	ENSRROG00000029211	USB1	100	90.566	Rhinopithecus_roxellana
ENSTSYG00000006997	USB1	100	89.057	ENSSBOG00000029362	USB1	100	89.057	Saimiri_boliviensis_boliviensis
ENSTSYG00000006997	USB1	83	73.516	ENSSHAG00000006993	USB1	97	69.388	Sarcophilus_harrisii
ENSTSYG00000006997	USB1	87	54.978	ENSSFOG00015023663	usb1	73	54.978	Scleropages_formosus
ENSTSYG00000006997	USB1	98	46.763	ENSSMAG00000015834	usb1	83	49.393	Scophthalmus_maximus
ENSTSYG00000006997	USB1	85	53.540	ENSSDUG00000002949	usb1	91	49.660	Seriola_dumerili
ENSTSYG00000006997	USB1	85	53.571	ENSSLDG00000014174	usb1	80	53.571	Seriola_lalandi_dorsalis
ENSTSYG00000006997	USB1	81	67.757	ENSSPUG00000006741	USB1	100	67.757	Sphenodon_punctatus
ENSTSYG00000006997	USB1	98	45.230	ENSSPAG00000007484	usb1	80	50.661	Stegastes_partitus
ENSTSYG00000006997	USB1	100	83.271	ENSSSCG00000002807	USB1	100	81.784	Sus_scrofa
ENSTSYG00000006997	USB1	79	69.378	ENSTGUG00000004792	USB1	87	64.783	Taeniopygia_guttata
ENSTSYG00000006997	USB1	98	47.015	ENSTRUG00000021069	usb1	89	47.561	Takifugu_rubripes
ENSTSYG00000006997	USB1	98	46.923	ENSTNIG00000000626	usb1	86	48.261	Tetraodon_nigroviridis
ENSTSYG00000006997	USB1	88	59.483	ENSTBEG00000001507	USB1	100	59.483	Tupaia_belangeri
ENSTSYG00000006997	USB1	100	85.874	ENSUAMG00000016823	USB1	100	85.874	Ursus_americanus
ENSTSYG00000006997	USB1	81	90.187	ENSUMAG00000021369	USB1	100	90.187	Ursus_maritimus
ENSTSYG00000006997	USB1	95	51.333	ENSVPAG00000009834	-	59	89.167	Vicugna_pacos
ENSTSYG00000006997	USB1	99	83.955	ENSVVUG00000023700	USB1	93	85.062	Vulpes_vulpes
ENSTSYG00000006997	USB1	82	55.300	ENSXETG00000013795	usb1	89	54.709	Xenopus_tropicalis
ENSTSYG00000006997	USB1	86	51.754	ENSXMAG00000024687	usb1	67	51.754	Xiphophorus_maculatus