EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTSYG00000008877 (Gene tree)
Gene ID: 103249421
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Carlito_syrichta
Status: putative
Strand: Plus strand
Length: 31822 bases
Position: chrKE928964.1:21745-53566
Accession: 103249421
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTSYP00000008157	UPF1_Zn_bind	PF09416.10	6.8e-75	1	1
ENSTSYP00000017119	UPF1_Zn_bind	PF09416.10	7.6e-75	1	1
ENSTSYP00000008157	ResIII	PF04851.15	2.5e-05	1	1
ENSTSYP00000017119	ResIII	PF04851.15	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTSYT00000008898	UPF1-202	3234	-	ENSTSYP00000008157	1077 (aa)	-	UPI000C2F7FEB
ENSTSYT00000049559	UPF1-201	3390	XM_008048052	ENSTSYP00000017119	1129 (aa)	-	UPI000C2F36E1
ENSTSYT00000036292	UPF1-203	3323	XM_021707552	ENSTSYP00000030836	373 (aa)	XP_021563227	UPI000C2F6F6C

Gene Model

Click here to download ENSTSYG00000008877's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTSYG00000008877's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTSYG00000008877	UPF1	99	97.967	ENSG00000005007	UPF1	96	97.967	Homo_sapiens
ENSTSYG00000008877	UPF1	98	92.424	ENSAPOG00000023773	upf1	95	92.614	Acanthochromis_polyacanthus
ENSTSYG00000008877	UPF1	98	93.637	ENSAPOG00000010916	-	95	93.732	Acanthochromis_polyacanthus
ENSTSYG00000008877	UPF1	99	97.780	ENSAMEG00000011474	UPF1	96	97.780	Ailuropoda_melanoleuca
ENSTSYG00000008877	UPF1	96	93.629	ENSACIG00000010985	-	100	93.726	Amphilophus_citrinellus
ENSTSYG00000008877	UPF1	98	92.148	ENSACIG00000019949	upf1	95	92.614	Amphilophus_citrinellus
ENSTSYG00000008877	UPF1	98	93.637	ENSAOCG00000006352	-	100	91.233	Amphiprion_ocellaris
ENSTSYG00000008877	UPF1	98	91.912	ENSAOCG00000018519	upf1	95	92.596	Amphiprion_ocellaris
ENSTSYG00000008877	UPF1	98	91.912	ENSAPEG00000016344	upf1	95	92.596	Amphiprion_percula
ENSTSYG00000008877	UPF1	98	93.637	ENSAPEG00000006292	-	100	91.233	Amphiprion_percula
ENSTSYG00000008877	UPF1	98	91.020	ENSATEG00000017867	upf1	95	91.955	Anabas_testudineus
ENSTSYG00000008877	UPF1	98	93.637	ENSATEG00000016606	-	95	93.732	Anabas_testudineus
ENSTSYG00000008877	UPF1	98	98.002	ENSAPLG00000009175	UPF1	99	98.002	Anas_platyrhynchos
ENSTSYG00000008877	UPF1	99	96.651	ENSANAG00000024107	UPF1	97	96.651	Aotus_nancymaae
ENSTSYG00000008877	UPF1	98	93.536	ENSACLG00000022630	-	95	93.536	Astatotilapia_calliptera
ENSTSYG00000008877	UPF1	98	91.958	ENSACLG00000007181	upf1	95	92.424	Astatotilapia_calliptera
ENSTSYG00000008877	UPF1	98	94.017	ENSAMXG00000042187	upf1	95	94.587	Astyanax_mexicanus
ENSTSYG00000008877	UPF1	99	97.778	ENSBTAG00000020922	UPF1	96	97.778	Bos_taurus
ENSTSYG00000008877	UPF1	85	53.055	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSTSYG00000008877	UPF1	99	97.967	ENSCJAG00000019627	UPF1	96	97.967	Callithrix_jacchus
ENSTSYG00000008877	UPF1	99	97.870	ENSCAFG00000014578	UPF1	96	97.870	Canis_familiaris
ENSTSYG00000008877	UPF1	99	96.852	ENSCAFG00020012347	UPF1	96	96.852	Canis_lupus_dingo
ENSTSYG00000008877	UPF1	99	97.776	ENSCHIG00000011018	UPF1	96	97.776	Capra_hircus
ENSTSYG00000008877	UPF1	99	97.563	ENSCAPG00000005758	UPF1	97	97.563	Cavia_aperea
ENSTSYG00000008877	UPF1	99	97.644	ENSCPOG00000025463	UPF1	96	97.644	Cavia_porcellus
ENSTSYG00000008877	UPF1	99	98.416	ENSCCAG00000032175	UPF1	96	98.416	Cebus_capucinus
ENSTSYG00000008877	UPF1	99	98.313	ENSCATG00000040306	UPF1	98	99.618	Cercocebus_atys
ENSTSYG00000008877	UPF1	99	98.592	ENSCLAG00000004037	UPF1	100	99.430	Chinchilla_lanigera
ENSTSYG00000008877	UPF1	99	97.127	ENSCSAG00000005276	UPF1	96	97.127	Chlorocebus_sabaeus
ENSTSYG00000008877	UPF1	99	96.097	ENSCPBG00000012513	UPF1	96	96.097	Chrysemys_picta_bellii
ENSTSYG00000008877	UPF1	72	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSTSYG00000008877	UPF1	97	73.321	ENSCSAVG00000006533	-	94	73.321	Ciona_savignyi
ENSTSYG00000008877	UPF1	99	98.689	ENSCANG00000029819	UPF1	99	98.689	Colobus_angolensis_palliatus
ENSTSYG00000008877	UPF1	99	96.468	ENSCGRG00001021067	Upf1	96	96.468	Cricetulus_griseus_chok1gshd
ENSTSYG00000008877	UPF1	99	97.572	ENSCGRG00000013480	Upf1	98	98.859	Cricetulus_griseus_crigri
ENSTSYG00000008877	UPF1	98	93.631	ENSCSEG00000016159	-	95	93.631	Cynoglossus_semilaevis
ENSTSYG00000008877	UPF1	97	87.417	ENSCSEG00000017239	upf1	95	87.464	Cynoglossus_semilaevis
ENSTSYG00000008877	UPF1	98	93.447	ENSCVAG00000010561	upf1	95	93.447	Cyprinodon_variegatus
ENSTSYG00000008877	UPF1	98	93.827	ENSDARG00000016302	upf1	95	94.397	Danio_rerio
ENSTSYG00000008877	UPF1	99	95.880	ENSDORG00000009984	Upf1	97	95.181	Dipodomys_ordii
ENSTSYG00000008877	UPF1	82	73.743	FBgn0030354	Upf1	80	69.753	Drosophila_melanogaster
ENSTSYG00000008877	UPF1	51	88.909	ENSEBUG00000010069	upf1	89	88.909	Eptatretus_burgeri
ENSTSYG00000008877	UPF1	99	96.759	ENSEASG00005006549	UPF1	96	96.759	Equus_asinus_asinus
ENSTSYG00000008877	UPF1	99	96.759	ENSECAG00000010639	UPF1	96	96.759	Equus_caballus
ENSTSYG00000008877	UPF1	98	92.918	ENSELUG00000012916	-	95	92.925	Esox_lucius
ENSTSYG00000008877	UPF1	98	91.399	ENSELUG00000020917	upf1	95	91.682	Esox_lucius
ENSTSYG00000008877	UPF1	99	97.778	ENSFCAG00000009757	UPF1	96	97.778	Felis_catus
ENSTSYG00000008877	UPF1	99	95.660	ENSFALG00000009312	UPF1	99	95.660	Ficedula_albicollis
ENSTSYG00000008877	UPF1	98	99.335	ENSFDAG00000014816	UPF1	100	99.335	Fukomys_damarensis
ENSTSYG00000008877	UPF1	98	89.548	ENSFHEG00000006428	upf1	94	89.548	Fundulus_heteroclitus
ENSTSYG00000008877	UPF1	89	93.466	ENSFHEG00000016276	-	96	93.648	Fundulus_heteroclitus
ENSTSYG00000008877	UPF1	98	93.352	ENSGMOG00000007541	upf1	95	93.922	Gadus_morhua
ENSTSYG00000008877	UPF1	99	96.100	ENSGALG00000003220	UPF1	95	96.100	Gallus_gallus
ENSTSYG00000008877	UPF1	98	93.346	ENSGAFG00000004831	upf1	95	93.346	Gambusia_affinis
ENSTSYG00000008877	UPF1	65	94.184	ENSGAFG00000015443	-	88	91.896	Gambusia_affinis
ENSTSYG00000008877	UPF1	99	96.639	ENSGAGG00000022217	UPF1	96	96.639	Gopherus_agassizii
ENSTSYG00000008877	UPF1	98	98.482	ENSGGOG00000002608	UPF1	99	98.574	Gorilla_gorilla
ENSTSYG00000008877	UPF1	84	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSTSYG00000008877	UPF1	84	85.057	ENSHBUG00000014694	upf1	90	85.057	Haplochromis_burtoni
ENSTSYG00000008877	UPF1	99	97.776	ENSHGLG00000010900	UPF1	96	97.776	Heterocephalus_glaber_female
ENSTSYG00000008877	UPF1	99	95.588	ENSHGLG00100005904	UPF1	97	97.624	Heterocephalus_glaber_male
ENSTSYG00000008877	UPF1	98	92.490	ENSHCOG00000008918	upf1	100	92.632	Hippocampus_comes
ENSTSYG00000008877	UPF1	98	94.492	ENSIPUG00000005108	UPF1	95	94.967	Ictalurus_punctatus
ENSTSYG00000008877	UPF1	99	98.141	ENSSTOG00000009196	UPF1	96	98.141	Ictidomys_tridecemlineatus
ENSTSYG00000008877	UPF1	99	97.579	ENSJJAG00000023151	Upf1	96	97.579	Jaculus_jaculus
ENSTSYG00000008877	UPF1	98	93.732	ENSKMAG00000004962	upf1	95	93.732	Kryptolebias_marmoratus
ENSTSYG00000008877	UPF1	98	90.628	ENSLBEG00000014862	upf1	95	91.940	Labrus_bergylta
ENSTSYG00000008877	UPF1	98	93.447	ENSLBEG00000027848	-	95	93.542	Labrus_bergylta
ENSTSYG00000008877	UPF1	65	97.131	ENSLACG00000008482	UPF1	100	97.131	Latimeria_chalumnae
ENSTSYG00000008877	UPF1	98	96.103	ENSLOCG00000002072	upf1	95	96.103	Lepisosteus_oculatus
ENSTSYG00000008877	UPF1	99	97.577	ENSLAFG00000014963	UPF1	96	97.410	Loxodonta_africana
ENSTSYG00000008877	UPF1	99	98.416	ENSMFAG00000037748	UPF1	96	98.416	Macaca_fascicularis
ENSTSYG00000008877	UPF1	99	98.327	ENSMMUG00000023286	UPF1	96	98.327	Macaca_mulatta
ENSTSYG00000008877	UPF1	99	98.416	ENSMNEG00000000046	UPF1	96	98.416	Macaca_nemestrina
ENSTSYG00000008877	UPF1	98	99.620	ENSMLEG00000028404	UPF1	100	99.620	Mandrillus_leucophaeus
ENSTSYG00000008877	UPF1	98	93.067	ENSMAMG00000006231	-	95	93.637	Mastacembelus_armatus
ENSTSYG00000008877	UPF1	98	90.833	ENSMAMG00000006229	upf1	95	91.955	Mastacembelus_armatus
ENSTSYG00000008877	UPF1	98	90.841	ENSMZEG00005003489	upf1	95	92.199	Maylandia_zebra
ENSTSYG00000008877	UPF1	98	93.536	ENSMZEG00005016386	-	95	93.536	Maylandia_zebra
ENSTSYG00000008877	UPF1	98	97.529	ENSMGAG00000004745	UPF1	100	97.529	Meleagris_gallopavo
ENSTSYG00000008877	UPF1	98	98.859	ENSMAUG00000011398	Upf1	95	98.859	Mesocricetus_auratus
ENSTSYG00000008877	UPF1	99	97.043	ENSMICG00000001659	UPF1	96	97.043	Microcebus_murinus
ENSTSYG00000008877	UPF1	99	97.584	ENSMOCG00000005699	Upf1	96	97.584	Microtus_ochrogaster
ENSTSYG00000008877	UPF1	97	92.080	ENSMMOG00000007881	upf1	94	92.660	Mola_mola
ENSTSYG00000008877	UPF1	98	91.358	ENSMMOG00000007537	-	99	91.453	Mola_mola
ENSTSYG00000008877	UPF1	99	97.305	ENSMODG00000003689	UPF1	95	97.812	Monodelphis_domestica
ENSTSYG00000008877	UPF1	98	91.912	ENSMALG00000000144	upf1	95	92.293	Monopterus_albus
ENSTSYG00000008877	UPF1	98	92.344	ENSMALG00000018100	-	95	92.439	Monopterus_albus
ENSTSYG00000008877	UPF1	99	97.398	MGP_CAROLIEiJ_G0031142	Upf1	96	97.398	Mus_caroli
ENSTSYG00000008877	UPF1	99	97.398	ENSMUSG00000058301	Upf1	96	97.398	Mus_musculus
ENSTSYG00000008877	UPF1	99	97.398	MGP_PahariEiJ_G0021607	Upf1	96	97.398	Mus_pahari
ENSTSYG00000008877	UPF1	99	97.398	MGP_SPRETEiJ_G0032260	Upf1	96	97.398	Mus_spretus
ENSTSYG00000008877	UPF1	99	96.852	ENSMPUG00000015516	UPF1	96	96.852	Mustela_putorius_furo
ENSTSYG00000008877	UPF1	99	96.953	ENSMLUG00000012122	UPF1	96	96.953	Myotis_lucifugus
ENSTSYG00000008877	UPF1	99	97.130	ENSNGAG00000024107	Upf1	96	97.130	Nannospalax_galili
ENSTSYG00000008877	UPF1	98	91.043	ENSNBRG00000022069	-	100	92.692	Neolamprologus_brichardi
ENSTSYG00000008877	UPF1	98	90.161	ENSNBRG00000000670	upf1	95	90.625	Neolamprologus_brichardi
ENSTSYG00000008877	UPF1	98	93.916	ENSNLEG00000006062	UPF1	100	93.916	Nomascus_leucogenys
ENSTSYG00000008877	UPF1	80	94.118	ENSMEUG00000014146	-	76	94.118	Notamacropus_eugenii
ENSTSYG00000008877	UPF1	98	90.684	ENSOPRG00000014018	UPF1	100	90.684	Ochotona_princeps
ENSTSYG00000008877	UPF1	99	98.319	ENSODEG00000012426	UPF1	95	99.335	Octodon_degus
ENSTSYG00000008877	UPF1	98	91.121	ENSONIG00000010452	upf1	95	92.481	Oreochromis_niloticus
ENSTSYG00000008877	UPF1	98	93.631	ENSONIG00000012729	-	95	93.631	Oreochromis_niloticus
ENSTSYG00000008877	UPF1	99	97.300	ENSOANG00000004568	UPF1	95	97.300	Ornithorhynchus_anatinus
ENSTSYG00000008877	UPF1	98	93.352	ENSORLG00000008453	upf1	95	93.352	Oryzias_latipes
ENSTSYG00000008877	UPF1	98	93.352	ENSORLG00020014758	upf1	95	93.352	Oryzias_latipes_hni
ENSTSYG00000008877	UPF1	98	93.352	ENSORLG00015010165	upf1	100	89.499	Oryzias_latipes_hsok
ENSTSYG00000008877	UPF1	98	93.447	ENSOMEG00000003665	upf1	95	93.447	Oryzias_melastigma
ENSTSYG00000008877	UPF1	99	97.043	ENSOGAG00000012866	UPF1	96	97.043	Otolemur_garnettii
ENSTSYG00000008877	UPF1	96	97.500	ENSOARG00000010739	UPF1	96	97.500	Ovis_aries
ENSTSYG00000008877	UPF1	99	98.689	ENSPPAG00000043884	UPF1	97	98.689	Pan_paniscus
ENSTSYG00000008877	UPF1	99	97.778	ENSPPRG00000023470	UPF1	96	97.778	Panthera_pardus
ENSTSYG00000008877	UPF1	98	96.384	ENSPTIG00000010159	UPF1	99	96.384	Panthera_tigris_altaica
ENSTSYG00000008877	UPF1	99	98.416	ENSPTRG00000010721	UPF1	96	98.416	Pan_troglodytes
ENSTSYG00000008877	UPF1	99	98.416	ENSPANG00000008847	UPF1	96	98.416	Papio_anubis
ENSTSYG00000008877	UPF1	91	93.909	ENSPKIG00000006069	upf1	94	93.909	Paramormyrops_kingsleyae
ENSTSYG00000008877	UPF1	71	97.647	ENSPSIG00000009491	UPF1	100	97.647	Pelodiscus_sinensis
ENSTSYG00000008877	UPF1	97	90.255	ENSPMGG00000017327	upf1	95	90.463	Periophthalmus_magnuspinnatus
ENSTSYG00000008877	UPF1	99	97.491	ENSPEMG00000001085	Upf1	96	97.491	Peromyscus_maniculatus_bairdii
ENSTSYG00000008877	UPF1	99	88.011	ENSPMAG00000001206	upf1	94	89.163	Petromyzon_marinus
ENSTSYG00000008877	UPF1	99	96.375	ENSPCIG00000006156	UPF1	95	96.375	Phascolarctos_cinereus
ENSTSYG00000008877	UPF1	98	90.678	ENSPLAG00000018155	-	95	90.678	Poecilia_latipinna
ENSTSYG00000008877	UPF1	98	93.441	ENSPLAG00000016232	-	95	93.441	Poecilia_latipinna
ENSTSYG00000008877	UPF1	98	91.271	ENSPMEG00000011443	-	95	91.271	Poecilia_mexicana
ENSTSYG00000008877	UPF1	98	93.536	ENSPMEG00000016319	-	95	93.536	Poecilia_mexicana
ENSTSYG00000008877	UPF1	98	91.243	ENSPREG00000009940	upf1	94	91.243	Poecilia_reticulata
ENSTSYG00000008877	UPF1	98	93.251	ENSPREG00000011247	-	95	93.251	Poecilia_reticulata
ENSTSYG00000008877	UPF1	99	92.791	ENSPPYG00000009752	UPF1	96	92.791	Pongo_abelii
ENSTSYG00000008877	UPF1	68	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSTSYG00000008877	UPF1	99	98.327	ENSPCOG00000023813	UPF1	96	98.327	Propithecus_coquereli
ENSTSYG00000008877	UPF1	67	100.000	ENSPVAG00000003183	UPF1	64	100.000	Pteropus_vampyrus
ENSTSYG00000008877	UPF1	98	93.536	ENSPNYG00000016731	-	95	93.536	Pundamilia_nyererei
ENSTSYG00000008877	UPF1	98	90.841	ENSPNYG00000003694	upf1	95	92.199	Pundamilia_nyererei
ENSTSYG00000008877	UPF1	98	94.207	ENSPNAG00000025614	upf1	95	94.777	Pygocentrus_nattereri
ENSTSYG00000008877	UPF1	99	97.398	ENSRNOG00000020134	Upf1	96	97.398	Rattus_norvegicus
ENSTSYG00000008877	UPF1	99	96.348	ENSRBIG00000013894	UPF1	98	98.160	Rhinopithecus_bieti
ENSTSYG00000008877	UPF1	99	98.689	ENSRROG00000040935	UPF1	99	98.689	Rhinopithecus_roxellana
ENSTSYG00000008877	UPF1	81	54.587	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSTSYG00000008877	UPF1	99	97.774	ENSSBOG00000023632	UPF1	98	97.774	Saimiri_boliviensis_boliviensis
ENSTSYG00000008877	UPF1	98	98.670	ENSSHAG00000010499	UPF1	100	98.670	Sarcophilus_harrisii
ENSTSYG00000008877	UPF1	98	96.103	ENSSFOG00015021095	upf1	99	96.008	Scleropages_formosus
ENSTSYG00000008877	UPF1	98	93.637	ENSSMAG00000021018	-	95	93.732	Scophthalmus_maximus
ENSTSYG00000008877	UPF1	98	90.253	ENSSMAG00000005055	upf1	95	91.199	Scophthalmus_maximus
ENSTSYG00000008877	UPF1	98	91.020	ENSSDUG00000013320	upf1	95	92.142	Seriola_dumerili
ENSTSYG00000008877	UPF1	98	93.827	ENSSDUG00000009629	-	95	93.922	Seriola_dumerili
ENSTSYG00000008877	UPF1	98	91.879	ENSSLDG00000020868	upf1	95	92.460	Seriola_lalandi_dorsalis
ENSTSYG00000008877	UPF1	98	93.827	ENSSLDG00000006878	-	95	93.922	Seriola_lalandi_dorsalis
ENSTSYG00000008877	UPF1	99	96.179	ENSSPUG00000010538	UPF1	96	96.179	Sphenodon_punctatus
ENSTSYG00000008877	UPF1	98	93.631	ENSSPAG00000011521	-	95	93.631	Stegastes_partitus
ENSTSYG00000008877	UPF1	98	90.209	ENSSPAG00000000003	upf1	95	90.237	Stegastes_partitus
ENSTSYG00000008877	UPF1	99	97.685	ENSSSCG00000039301	UPF1	99	98.478	Sus_scrofa
ENSTSYG00000008877	UPF1	80	91.309	ENSTGUG00000001057	UPF1	89	97.162	Taeniopygia_guttata
ENSTSYG00000008877	UPF1	98	92.008	ENSTRUG00000000150	upf1	95	92.008	Takifugu_rubripes
ENSTSYG00000008877	UPF1	98	92.586	ENSTRUG00000005131	-	95	92.681	Takifugu_rubripes
ENSTSYG00000008877	UPF1	99	93.621	ENSTTRG00000011544	UPF1	93	94.672	Tursiops_truncatus
ENSTSYG00000008877	UPF1	99	96.759	ENSUAMG00000007093	UPF1	96	96.759	Ursus_americanus
ENSTSYG00000008877	UPF1	99	98.407	ENSUMAG00000006652	UPF1	99	98.564	Ursus_maritimus
ENSTSYG00000008877	UPF1	99	96.852	ENSVVUG00000007797	UPF1	96	96.852	Vulpes_vulpes
ENSTSYG00000008877	UPF1	99	82.817	ENSXETG00000013602	upf1	93	83.412	Xenopus_tropicalis
ENSTSYG00000008877	UPF1	97	93.666	ENSXCOG00000005764	-	100	93.666	Xiphophorus_couchianus
ENSTSYG00000008877	UPF1	94	90.936	ENSXCOG00000015275	-	91	90.936	Xiphophorus_couchianus
ENSTSYG00000008877	UPF1	98	91.160	ENSXMAG00000001703	-	95	91.160	Xiphophorus_maculatus
ENSTSYG00000008877	UPF1	98	93.346	ENSXMAG00000002540	-	95	93.346	Xiphophorus_maculatus