EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTSYG00000028560 (Gene tree)
Gene ID: 103272496
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Carlito_syrichta
Status: putative
Strand: Plus strand
Length: 17335 bases
Position: chrKE947409.1:381589-398923
Accession: 103272496
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTSYP00000022348	CPSF_A	PF03178.15	2.4e-92	1	1
ENSTSYP00000025648	CPSF_A	PF03178.15	4.1e-92	1	1
ENSTSYP00000029460	CPSF_A	PF03178.15	4.2e-92	1	1
ENSTSYP00000033767	CPSF_A	PF03178.15	4.2e-92	1	1
ENSTSYP00000014111	CPSF_A	PF03178.15	4.5e-92	1	1
ENSTSYP00000030782	CPSF_A	PF03178.15	5.8e-69	1	2
ENSTSYP00000030782	CPSF_A	PF03178.15	5.8e-69	2	2
ENSTSYP00000028059	CPSF_A	PF03178.15	9.1e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTSYT00000046043	CPSF1-201	4329	XM_008069984	ENSTSYP00000014111	1442 (aa)	XP_008068175	UPI000C2F3F64
ENSTSYT00000037005	CPSF1-204	4143	-	ENSTSYP00000025648	1380 (aa)	-	UPI000C2F6F00
ENSTSYT00000047954	CPSF1-205	4041	-	ENSTSYP00000030782	1346 (aa)	-	UPI000C2F6225
ENSTSYT00000048978	CPSF1-203	4164	-	ENSTSYP00000029460	1387 (aa)	-	UPI000C2F70FD
ENSTSYT00000028025	CPSF1-202	4179	-	ENSTSYP00000033767	1392 (aa)	-	UPI000C2F33EF
ENSTSYT00000034442	CPSF1-206	3201	-	ENSTSYP00000022348	1066 (aa)	-	UPI000C2F4152
ENSTSYT00000049165	CPSF1-207	615	-	ENSTSYP00000028059	204 (aa)	-	UPI000C2F3539

Gene Model

Click here to download ENSTSYG00000028560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTSYG00000028560's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTSYG00000028560	CPSF1	99	99.123	ENSG00000071894	CPSF1	100	97.852	Homo_sapiens
ENSTSYG00000028560	CPSF1	100	81.481	ENSAPOG00000019621	cpsf1	100	78.514	Acanthochromis_polyacanthus
ENSTSYG00000028560	CPSF1	97	95.282	ENSAMEG00000005557	CPSF1	100	95.282	Ailuropoda_melanoleuca
ENSTSYG00000028560	CPSF1	100	80.093	ENSACIG00000006112	cpsf1	100	78.754	Amphilophus_citrinellus
ENSTSYG00000028560	CPSF1	100	81.481	ENSAOCG00000007120	cpsf1	100	80.000	Amphiprion_ocellaris
ENSTSYG00000028560	CPSF1	100	81.481	ENSAPEG00000005755	cpsf1	100	80.289	Amphiprion_percula
ENSTSYG00000028560	CPSF1	100	81.019	ENSATEG00000011097	cpsf1	100	78.167	Anabas_testudineus
ENSTSYG00000028560	CPSF1	93	81.771	ENSACAG00000009655	CPSF1	100	81.771	Anolis_carolinensis
ENSTSYG00000028560	CPSF1	99	99.123	ENSANAG00000036514	CPSF1	100	97.989	Aotus_nancymaae
ENSTSYG00000028560	CPSF1	100	80.093	ENSACLG00000012231	cpsf1	99	79.199	Astatotilapia_calliptera
ENSTSYG00000028560	CPSF1	100	80.093	ENSAMXG00000008485	cpsf1	100	74.361	Astyanax_mexicanus
ENSTSYG00000028560	CPSF1	99	97.101	ENSBTAG00000008355	CPSF1	100	94.960	Bos_taurus
ENSTSYG00000028560	CPSF1	99	34.081	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSTSYG00000028560	CPSF1	99	99.123	ENSCJAG00000021421	CPSF1	100	97.920	Callithrix_jacchus
ENSTSYG00000028560	CPSF1	97	96.712	ENSCAFG00000001600	CPSF1	100	97.112	Canis_familiaris
ENSTSYG00000028560	CPSF1	100	96.955	ENSCAFG00020020821	CPSF1	100	96.955	Canis_lupus_dingo
ENSTSYG00000028560	CPSF1	99	96.522	ENSCHIG00000015833	CPSF1	100	91.110	Capra_hircus
ENSTSYG00000028560	CPSF1	97	96.129	ENSCAPG00000014921	CPSF1	99	96.129	Cavia_aperea
ENSTSYG00000028560	CPSF1	100	95.773	ENSCPOG00000011448	CPSF1	100	95.773	Cavia_porcellus
ENSTSYG00000028560	CPSF1	99	99.415	ENSCCAG00000037658	CPSF1	100	98.128	Cebus_capucinus
ENSTSYG00000028560	CPSF1	99	98.830	ENSCATG00000037234	CPSF1	99	99.104	Cercocebus_atys
ENSTSYG00000028560	CPSF1	100	97.573	ENSCLAG00000012166	CPSF1	100	97.573	Chinchilla_lanigera
ENSTSYG00000028560	CPSF1	100	97.850	ENSCSAG00000008502	CPSF1	100	97.850	Chlorocebus_sabaeus
ENSTSYG00000028560	CPSF1	99	87.964	ENSCPBG00000018910	CPSF1	96	87.964	Chrysemys_picta_bellii
ENSTSYG00000028560	CPSF1	96	48.494	ENSCING00000000514	-	100	48.422	Ciona_intestinalis
ENSTSYG00000028560	CPSF1	99	47.871	ENSCSAVG00000002293	-	99	49.302	Ciona_savignyi
ENSTSYG00000028560	CPSF1	100	96.078	ENSCANG00000032760	CPSF1	100	96.078	Colobus_angolensis_palliatus
ENSTSYG00000028560	CPSF1	100	97.226	ENSCGRG00001016344	Cpsf1	100	97.226	Cricetulus_griseus_chok1gshd
ENSTSYG00000028560	CPSF1	98	97.661	ENSCGRG00000003118	Cpsf1	100	95.146	Cricetulus_griseus_crigri
ENSTSYG00000028560	CPSF1	100	77.855	ENSCSEG00000013464	cpsf1	100	77.855	Cynoglossus_semilaevis
ENSTSYG00000028560	CPSF1	100	80.976	ENSCVAG00000014059	cpsf1	100	80.976	Cyprinodon_variegatus
ENSTSYG00000028560	CPSF1	100	79.752	ENSDARG00000034178	cpsf1	100	79.821	Danio_rerio
ENSTSYG00000028560	CPSF1	68	96.812	ENSDNOG00000043654	CPSF1	94	96.812	Dasypus_novemcinctus
ENSTSYG00000028560	CPSF1	97	96.487	ENSDORG00000006278	Cpsf1	99	96.487	Dipodomys_ordii
ENSTSYG00000028560	CPSF1	100	54.348	FBgn0024698	Cpsf160	100	45.124	Drosophila_melanogaster
ENSTSYG00000028560	CPSF1	83	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSTSYG00000028560	CPSF1	90	62.755	ENSEBUG00000006844	-	98	74.869	Eptatretus_burgeri
ENSTSYG00000028560	CPSF1	100	97.509	ENSEASG00005010774	CPSF1	100	97.509	Equus_asinus_asinus
ENSTSYG00000028560	CPSF1	100	97.509	ENSECAG00000022209	CPSF1	100	97.509	Equus_caballus
ENSTSYG00000028560	CPSF1	100	95.156	ENSEEUG00000000471	CPSF1	100	95.156	Erinaceus_europaeus
ENSTSYG00000028560	CPSF1	100	80.556	ENSELUG00000012271	cpsf1	100	78.745	Esox_lucius
ENSTSYG00000028560	CPSF1	100	97.503	ENSFDAG00000016060	CPSF1	100	97.503	Fukomys_damarensis
ENSTSYG00000028560	CPSF1	100	77.273	ENSFHEG00000016801	cpsf1	100	77.342	Fundulus_heteroclitus
ENSTSYG00000028560	CPSF1	100	79.167	ENSGMOG00000000796	cpsf1	100	78.429	Gadus_morhua
ENSTSYG00000028560	CPSF1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSTSYG00000028560	CPSF1	100	78.955	ENSGACG00000008703	cpsf1	100	78.944	Gasterosteus_aculeatus
ENSTSYG00000028560	CPSF1	100	84.440	ENSGAGG00000004276	CPSF1	98	88.087	Gopherus_agassizii
ENSTSYG00000028560	CPSF1	100	62.745	ENSGGOG00000040487	-	100	70.370	Gorilla_gorilla
ENSTSYG00000028560	CPSF1	100	97.920	ENSGGOG00000016185	CPSF1	100	97.920	Gorilla_gorilla
ENSTSYG00000028560	CPSF1	100	80.093	ENSHBUG00000018900	cpsf1	100	80.208	Haplochromis_burtoni
ENSTSYG00000028560	CPSF1	100	97.295	ENSHGLG00000016139	CPSF1	100	97.295	Heterocephalus_glaber_female
ENSTSYG00000028560	CPSF1	100	97.226	ENSHGLG00100009750	CPSF1	100	97.226	Heterocephalus_glaber_male
ENSTSYG00000028560	CPSF1	100	78.704	ENSHCOG00000018509	cpsf1	100	77.137	Hippocampus_comes
ENSTSYG00000028560	CPSF1	100	80.556	ENSIPUG00000011259	cpsf1	100	76.770	Ictalurus_punctatus
ENSTSYG00000028560	CPSF1	97	97.214	ENSSTOG00000009957	CPSF1	99	97.214	Ictidomys_tridecemlineatus
ENSTSYG00000028560	CPSF1	99	97.953	ENSJJAG00000023002	Cpsf1	100	96.810	Jaculus_jaculus
ENSTSYG00000028560	CPSF1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSTSYG00000028560	CPSF1	100	79.630	ENSLBEG00000003601	cpsf1	100	77.861	Labrus_bergylta
ENSTSYG00000028560	CPSF1	100	82.870	ENSLACG00000000233	CPSF1	100	69.088	Latimeria_chalumnae
ENSTSYG00000028560	CPSF1	100	83.028	ENSLOCG00000008484	cpsf1	100	78.813	Lepisosteus_oculatus
ENSTSYG00000028560	CPSF1	97	95.780	ENSLAFG00000022601	CPSF1	100	95.780	Loxodonta_africana
ENSTSYG00000028560	CPSF1	100	97.712	ENSMFAG00000037013	CPSF1	99	98.806	Macaca_fascicularis
ENSTSYG00000028560	CPSF1	99	98.830	ENSMMUG00000007380	CPSF1	100	97.781	Macaca_mulatta
ENSTSYG00000028560	CPSF1	100	96.078	ENSMNEG00000043564	CPSF1	100	97.848	Macaca_nemestrina
ENSTSYG00000028560	CPSF1	100	97.712	ENSMLEG00000043010	CPSF1	99	98.806	Mandrillus_leucophaeus
ENSTSYG00000028560	CPSF1	100	81.019	ENSMAMG00000003803	cpsf1	100	78.784	Mastacembelus_armatus
ENSTSYG00000028560	CPSF1	100	80.093	ENSMZEG00005001168	cpsf1	100	77.993	Maylandia_zebra
ENSTSYG00000028560	CPSF1	100	97.018	ENSMAUG00000003601	Cpsf1	100	97.018	Mesocricetus_auratus
ENSTSYG00000028560	CPSF1	100	97.920	ENSMICG00000015767	CPSF1	100	97.920	Microcebus_murinus
ENSTSYG00000028560	CPSF1	100	96.879	ENSMOCG00000022758	Cpsf1	100	96.879	Microtus_ochrogaster
ENSTSYG00000028560	CPSF1	100	79.253	ENSMMOG00000021245	cpsf1	100	79.322	Mola_mola
ENSTSYG00000028560	CPSF1	100	93.724	ENSMODG00000010755	CPSF1	100	93.724	Monodelphis_domestica
ENSTSYG00000028560	CPSF1	100	80.093	ENSMALG00000020545	cpsf1	100	78.011	Monopterus_albus
ENSTSYG00000028560	CPSF1	100	97.365	MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.365	Mus_caroli
ENSTSYG00000028560	CPSF1	100	97.295	ENSMUSG00000034022	Cpsf1	100	97.295	Mus_musculus
ENSTSYG00000028560	CPSF1	100	97.295	MGP_PahariEiJ_G0019946	Cpsf1	100	97.295	Mus_pahari
ENSTSYG00000028560	CPSF1	100	97.295	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.295	Mus_spretus
ENSTSYG00000028560	CPSF1	94	95.926	ENSMPUG00000006419	CPSF1	93	95.926	Mustela_putorius_furo
ENSTSYG00000028560	CPSF1	78	97.484	ENSMLUG00000000667	-	100	96.667	Myotis_lucifugus
ENSTSYG00000028560	CPSF1	100	96.741	ENSNGAG00000022460	Cpsf1	100	96.741	Nannospalax_galili
ENSTSYG00000028560	CPSF1	100	80.093	ENSNBRG00000000813	cpsf1	100	75.173	Neolamprologus_brichardi
ENSTSYG00000028560	CPSF1	100	96.078	ENSNLEG00000010633	-	100	96.078	Nomascus_leucogenys
ENSTSYG00000028560	CPSF1	85	97.674	ENSMEUG00000014922	CPSF1	85	97.674	Notamacropus_eugenii
ENSTSYG00000028560	CPSF1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSTSYG00000028560	CPSF1	100	97.781	ENSODEG00000013995	CPSF1	100	97.781	Octodon_degus
ENSTSYG00000028560	CPSF1	100	80.346	ENSONIG00000007676	cpsf1	100	80.554	Oreochromis_niloticus
ENSTSYG00000028560	CPSF1	58	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSTSYG00000028560	CPSF1	100	78.241	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSTSYG00000028560	CPSF1	100	78.241	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSTSYG00000028560	CPSF1	100	78.241	ENSORLG00015009979	cpsf1	100	77.853	Oryzias_latipes_hsok
ENSTSYG00000028560	CPSF1	100	78.704	ENSOMEG00000011849	cpsf1	100	78.080	Oryzias_melastigma
ENSTSYG00000028560	CPSF1	100	98.128	ENSOGAG00000000315	CPSF1	100	98.128	Otolemur_garnettii
ENSTSYG00000028560	CPSF1	55	85.259	ENSOARG00000013594	-	89	92.063	Ovis_aries
ENSTSYG00000028560	CPSF1	99	99.123	ENSPPAG00000019280	CPSF1	100	97.989	Pan_paniscus
ENSTSYG00000028560	CPSF1	100	61.765	ENSPTRG00000052516	-	100	68.981	Pan_troglodytes
ENSTSYG00000028560	CPSF1	99	99.123	ENSPTRG00000051253	-	100	96.319	Pan_troglodytes
ENSTSYG00000028560	CPSF1	99	99.123	ENSPTRG00000049288	-	100	97.989	Pan_troglodytes
ENSTSYG00000028560	CPSF1	100	96.078	ENSPANG00000015005	CPSF1	100	97.704	Papio_anubis
ENSTSYG00000028560	CPSF1	100	81.481	ENSPKIG00000002582	cpsf1	100	81.653	Paramormyrops_kingsleyae
ENSTSYG00000028560	CPSF1	100	77.315	ENSPMGG00000022177	-	100	84.259	Periophthalmus_magnuspinnatus
ENSTSYG00000028560	CPSF1	100	93.655	ENSPCIG00000009035	CPSF1	100	93.655	Phascolarctos_cinereus
ENSTSYG00000028560	CPSF1	100	77.315	ENSPFOG00000012870	cpsf1	100	76.861	Poecilia_formosa
ENSTSYG00000028560	CPSF1	100	76.852	ENSPREG00000016307	cpsf1	100	76.606	Poecilia_reticulata
ENSTSYG00000028560	CPSF1	93	100.000	ENSPPYG00000018973	CPSF1	100	89.875	Pongo_abelii
ENSTSYG00000028560	CPSF1	91	94.886	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSTSYG00000028560	CPSF1	99	98.830	ENSPCOG00000020001	CPSF1	100	95.588	Propithecus_coquereli
ENSTSYG00000028560	CPSF1	91	98.857	ENSPVAG00000006761	CPSF1	91	98.857	Pteropus_vampyrus
ENSTSYG00000028560	CPSF1	100	80.093	ENSPNYG00000004906	cpsf1	100	79.167	Pundamilia_nyererei
ENSTSYG00000028560	CPSF1	100	75.776	ENSPNAG00000024395	cpsf1	100	75.776	Pygocentrus_nattereri
ENSTSYG00000028560	CPSF1	100	97.365	ENSRNOG00000030705	Cpsf1	100	97.365	Rattus_norvegicus
ENSTSYG00000028560	CPSF1	99	98.830	ENSRBIG00000044907	CPSF1	100	97.712	Rhinopithecus_bieti
ENSTSYG00000028560	CPSF1	99	98.830	ENSRROG00000044861	CPSF1	100	97.642	Rhinopithecus_roxellana
ENSTSYG00000028560	CPSF1	97	97.848	ENSSBOG00000027177	CPSF1	100	97.848	Saimiri_boliviensis_boliviensis
ENSTSYG00000028560	CPSF1	100	93.517	ENSSHAG00000006500	CPSF1	100	93.517	Sarcophilus_harrisii
ENSTSYG00000028560	CPSF1	100	82.407	ENSSFOG00015004606	cpsf1	100	81.891	Scleropages_formosus
ENSTSYG00000028560	CPSF1	100	81.481	ENSSMAG00000020547	cpsf1	100	78.349	Scophthalmus_maximus
ENSTSYG00000028560	CPSF1	100	81.019	ENSSDUG00000001100	cpsf1	100	79.544	Seriola_dumerili
ENSTSYG00000028560	CPSF1	100	81.019	ENSSLDG00000003619	cpsf1	100	79.806	Seriola_lalandi_dorsalis
ENSTSYG00000028560	CPSF1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSTSYG00000028560	CPSF1	100	89.706	ENSSPUG00000014396	CPSF1	100	89.706	Sphenodon_punctatus
ENSTSYG00000028560	CPSF1	100	81.019	ENSSPAG00000005349	cpsf1	100	78.634	Stegastes_partitus
ENSTSYG00000028560	CPSF1	100	96.194	ENSSSCG00000005906	CPSF1	100	96.194	Sus_scrofa
ENSTSYG00000028560	CPSF1	100	77.778	ENSTRUG00000013134	cpsf1	99	78.252	Takifugu_rubripes
ENSTSYG00000028560	CPSF1	100	79.175	ENSTNIG00000014027	cpsf1	100	79.244	Tetraodon_nigroviridis
ENSTSYG00000028560	CPSF1	77	89.310	ENSTBEG00000001756	CPSF1	91	89.310	Tupaia_belangeri
ENSTSYG00000028560	CPSF1	100	89.815	ENSTTRG00000001937	CPSF1	90	97.409	Tursiops_truncatus
ENSTSYG00000028560	CPSF1	97	96.855	ENSUAMG00000006476	CPSF1	98	96.855	Ursus_americanus
ENSTSYG00000028560	CPSF1	67	54.967	ENSVPAG00000000157	-	50	95.960	Vicugna_pacos
ENSTSYG00000028560	CPSF1	100	94.634	ENSVVUG00000005940	-	100	94.634	Vulpes_vulpes
ENSTSYG00000028560	CPSF1	100	77.870	ENSXCOG00000003608	cpsf1	100	78.077	Xiphophorus_couchianus
ENSTSYG00000028560	CPSF1	100	77.348	ENSXMAG00000005798	cpsf1	100	77.624	Xiphophorus_maculatus