EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTSYG00000030906 (Gene tree)
Gene ID: 103249522
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Carlito_syrichta
Status: putative
Strand: Minus strand
Length: 10264 bases
Position: chrKE929031.1:5563-15826
Accession: 103249522
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTSYP00000028687	LSM	PF01423.22	9.7e-17	1	1
ENSTSYP00000016327	LSM	PF01423.22	9.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTSYT00000048985	LSM4-203	375	-	ENSTSYP00000019903	124 (aa)	-	UPI000C2F4F64
ENSTSYT00000039715	LSM4-202	378	-	ENSTSYP00000016327	125 (aa)	-	UPI000C2F5FBE
ENSTSYT00000029963	LSM4-201	1018	XM_008048151	ENSTSYP00000028687	139 (aa)	XP_008046342	A0A1U7T090

Gene Model

Click here to download ENSTSYG00000030906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTSYG00000030906's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTSYG00000030906	LSM4	52	34.722	ENSTSYG00000007649	SNRPD3	56	34.722
ENSTSYG00000030906	LSM4	55	32.500	ENSTSYG00000030015	-	83	32.500
ENSTSYG00000030906	LSM4	71	32.673	ENSTSYG00000034844	LSM2	93	34.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTSYG00000030906	LSM4	100	99.281	ENSG00000130520	LSM4	100	99.281	Homo_sapiens
ENSTSYG00000030906	LSM4	99	72.848	ENSAPOG00000005643	lsm4	58	97.727	Acanthochromis_polyacanthus
ENSTSYG00000030906	LSM4	100	99.200	ENSAMEG00000011162	LSM4	95	99.275	Ailuropoda_melanoleuca
ENSTSYG00000030906	LSM4	99	76.923	ENSAOCG00000006414	lsm4	59	97.727	Amphiprion_ocellaris
ENSTSYG00000030906	LSM4	99	74.306	ENSAPEG00000006238	lsm4	59	97.727	Amphiprion_percula
ENSTSYG00000030906	LSM4	71	95.960	ENSATEG00000016559	lsm4	58	97.727	Anabas_testudineus
ENSTSYG00000030906	LSM4	100	99.281	ENSANAG00000034659	LSM4	100	99.281	Aotus_nancymaae
ENSTSYG00000030906	LSM4	79	83.065	ENSACLG00000022738	lsm4	60	97.727	Astatotilapia_calliptera
ENSTSYG00000030906	LSM4	99	83.333	ENSAMXG00000016932	lsm4	62	96.591	Astyanax_mexicanus
ENSTSYG00000030906	LSM4	100	99.281	ENSBTAG00000008578	LSM4	100	99.281	Bos_taurus
ENSTSYG00000030906	LSM4	60	74.699	WBGene00003078	lsm-4	67	75.610	Caenorhabditis_elegans
ENSTSYG00000030906	LSM4	100	99.281	ENSCJAG00000014171	LSM4	100	99.281	Callithrix_jacchus
ENSTSYG00000030906	LSM4	99	99.275	ENSCAFG00000014900	LSM4	90	99.275	Canis_familiaris
ENSTSYG00000030906	LSM4	100	99.281	ENSCAFG00020012137	LSM4	100	99.281	Canis_lupus_dingo
ENSTSYG00000030906	LSM4	100	99.200	ENSCHIG00000010928	LSM4	91	99.275	Capra_hircus
ENSTSYG00000030906	LSM4	100	98.561	ENSCAPG00000014140	LSM4	100	98.561	Cavia_aperea
ENSTSYG00000030906	LSM4	100	98.561	ENSCPOG00000024117	LSM4	100	98.561	Cavia_porcellus
ENSTSYG00000030906	LSM4	100	99.281	ENSCCAG00000036308	LSM4	100	99.281	Cebus_capucinus
ENSTSYG00000030906	LSM4	100	99.281	ENSCATG00000029311	LSM4	100	99.281	Cercocebus_atys
ENSTSYG00000030906	LSM4	100	95.683	ENSCLAG00000010828	LSM4	100	95.683	Chinchilla_lanigera
ENSTSYG00000030906	LSM4	100	99.281	ENSCSAG00000005370	LSM4	100	99.281	Chlorocebus_sabaeus
ENSTSYG00000030906	LSM4	100	81.295	ENSCPBG00000012925	LSM4	100	89.209	Chrysemys_picta_bellii
ENSTSYG00000030906	LSM4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSTSYG00000030906	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSTSYG00000030906	LSM4	100	99.281	ENSCANG00000043686	LSM4	100	99.281	Colobus_angolensis_palliatus
ENSTSYG00000030906	LSM4	100	96.403	ENSCGRG00001014436	Lsm4	100	96.403	Cricetulus_griseus_chok1gshd
ENSTSYG00000030906	LSM4	100	96.000	ENSCGRG00000009398	Lsm4	100	96.377	Cricetulus_griseus_crigri
ENSTSYG00000030906	LSM4	70	94.845	ENSCSEG00000016127	lsm4	62	96.591	Cynoglossus_semilaevis
ENSTSYG00000030906	LSM4	99	76.812	ENSCVAG00000010601	lsm4	62	96.591	Cyprinodon_variegatus
ENSTSYG00000030906	LSM4	98	73.984	ENSCVAG00000021828	lsm4	56	95.890	Cyprinodon_variegatus
ENSTSYG00000030906	LSM4	97	78.014	ENSDARG00000023852	lsm4	62	97.727	Danio_rerio
ENSTSYG00000030906	LSM4	100	97.122	ENSDORG00000024225	Lsm4	100	97.122	Dipodomys_ordii
ENSTSYG00000030906	LSM4	70	82.474	FBgn0032240	CG17768	57	89.773	Drosophila_melanogaster
ENSTSYG00000030906	LSM4	99	97.581	ENSETEG00000007762	-	100	97.581	Echinops_telfairi
ENSTSYG00000030906	LSM4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSTSYG00000030906	LSM4	100	99.281	ENSECAG00000010141	LSM4	57	99.281	Equus_caballus
ENSTSYG00000030906	LSM4	95	83.582	ENSELUG00000012821	lsm4	66	97.701	Esox_lucius
ENSTSYG00000030906	LSM4	100	99.281	ENSFCAG00000040580	LSM4	100	99.281	Felis_catus
ENSTSYG00000030906	LSM4	99	80.435	ENSFALG00000009478	LSM4	99	89.130	Ficedula_albicollis
ENSTSYG00000030906	LSM4	100	96.000	ENSFDAG00000010124	LSM4	100	96.377	Fukomys_damarensis
ENSTSYG00000030906	LSM4	69	95.833	ENSGMOG00000007729	lsm4	59	97.701	Gadus_morhua
ENSTSYG00000030906	LSM4	100	80.576	ENSGALG00000003385	LSM4	100	89.209	Gallus_gallus
ENSTSYG00000030906	LSM4	79	82.258	ENSGAFG00000004903	lsm4	55	93.151	Gambusia_affinis
ENSTSYG00000030906	LSM4	68	96.842	ENSGACG00000008140	lsm4	59	97.727	Gasterosteus_aculeatus
ENSTSYG00000030906	LSM4	100	81.295	ENSGAGG00000017812	LSM4	100	89.209	Gopherus_agassizii
ENSTSYG00000030906	LSM4	100	99.281	ENSGGOG00000012914	-	100	99.281	Gorilla_gorilla
ENSTSYG00000030906	LSM4	100	96.403	ENSHGLG00000006568	LSM4	100	96.403	Heterocephalus_glaber_female
ENSTSYG00000030906	LSM4	67	98.925	ENSHGLG00100007894	LSM4	100	98.925	Heterocephalus_glaber_male
ENSTSYG00000030906	LSM4	99	76.642	ENSHCOG00000008819	lsm4	62	97.727	Hippocampus_comes
ENSTSYG00000030906	LSM4	99	83.333	ENSIPUG00000005368	Lsm4	62	97.727	Ictalurus_punctatus
ENSTSYG00000030906	LSM4	100	99.281	ENSSTOG00000016494	LSM4	100	99.281	Ictidomys_tridecemlineatus
ENSTSYG00000030906	LSM4	100	97.842	ENSJJAG00000017420	Lsm4	100	97.842	Jaculus_jaculus
ENSTSYG00000030906	LSM4	62	96.512	ENSKMAG00000005073	lsm4	61	96.591	Kryptolebias_marmoratus
ENSTSYG00000030906	LSM4	71	95.960	ENSLBEG00000027930	lsm4	59	97.727	Labrus_bergylta
ENSTSYG00000030906	LSM4	99	82.482	ENSLACG00000015861	LSM4	98	82.482	Latimeria_chalumnae
ENSTSYG00000030906	LSM4	93	82.946	ENSLOCG00000002025	lsm4	62	96.591	Lepisosteus_oculatus
ENSTSYG00000030906	LSM4	100	97.600	ENSLAFG00000017459	LSM4	99	97.826	Loxodonta_africana
ENSTSYG00000030906	LSM4	100	99.281	ENSMFAG00000031194	LSM4	100	99.281	Macaca_fascicularis
ENSTSYG00000030906	LSM4	100	99.281	ENSMMUG00000004405	LSM4	100	99.281	Macaca_mulatta
ENSTSYG00000030906	LSM4	100	99.281	ENSMNEG00000042899	LSM4	100	99.281	Macaca_nemestrina
ENSTSYG00000030906	LSM4	100	99.281	ENSMLEG00000027948	LSM4	100	99.281	Mandrillus_leucophaeus
ENSTSYG00000030906	LSM4	99	78.986	ENSMAMG00000006190	lsm4	62	97.727	Mastacembelus_armatus
ENSTSYG00000030906	LSM4	79	83.065	ENSMZEG00005016420	lsm4	60	97.727	Maylandia_zebra
ENSTSYG00000030906	LSM4	99	82.014	ENSMGAG00000004976	LSM4	99	89.130	Meleagris_gallopavo
ENSTSYG00000030906	LSM4	100	98.561	ENSMICG00000000222	LSM4	100	98.561	Microcebus_murinus
ENSTSYG00000030906	LSM4	100	97.122	ENSMOCG00000020861	Lsm4	100	97.122	Microtus_ochrogaster
ENSTSYG00000030906	LSM4	99	95.161	ENSMODG00000015044	-	100	95.161	Monodelphis_domestica
ENSTSYG00000030906	LSM4	99	76.429	ENSMALG00000018159	lsm4	62	96.591	Monopterus_albus
ENSTSYG00000030906	LSM4	100	97.122	MGP_CAROLIEiJ_G0031158	Lsm4	100	97.122	Mus_caroli
ENSTSYG00000030906	LSM4	100	97.122	ENSMUSG00000031848	Lsm4	100	97.122	Mus_musculus
ENSTSYG00000030906	LSM4	100	97.122	MGP_PahariEiJ_G0021623	Lsm4	100	97.122	Mus_pahari
ENSTSYG00000030906	LSM4	100	97.122	MGP_SPRETEiJ_G0032276	Lsm4	100	97.122	Mus_spretus
ENSTSYG00000030906	LSM4	100	99.281	ENSMPUG00000015589	LSM4	100	99.281	Mustela_putorius_furo
ENSTSYG00000030906	LSM4	100	99.200	ENSMLUG00000004010	LSM4	99	99.275	Myotis_lucifugus
ENSTSYG00000030906	LSM4	100	97.122	ENSNGAG00000008644	Lsm4	100	97.122	Nannospalax_galili
ENSTSYG00000030906	LSM4	71	95.918	ENSNBRG00000022150	lsm4	54	97.701	Neolamprologus_brichardi
ENSTSYG00000030906	LSM4	99	91.935	ENSMEUG00000013229	LSM4	100	91.935	Notamacropus_eugenii
ENSTSYG00000030906	LSM4	99	92.742	ENSOPRG00000005575	LSM4	100	82.258	Ochotona_princeps
ENSTSYG00000030906	LSM4	100	72.662	ENSODEG00000011712	-	100	72.662	Octodon_degus
ENSTSYG00000030906	LSM4	100	86.331	ENSODEG00000004519	-	100	74.101	Octodon_degus
ENSTSYG00000030906	LSM4	100	96.403	ENSODEG00000020549	-	100	96.403	Octodon_degus
ENSTSYG00000030906	LSM4	79	83.065	ENSONIG00000012724	lsm4	60	97.727	Oreochromis_niloticus
ENSTSYG00000030906	LSM4	63	92.308	ENSOANG00000007434	LSM4	78	92.308	Ornithorhynchus_anatinus
ENSTSYG00000030906	LSM4	99	84.397	ENSORLG00000008391	lsm4	61	96.591	Oryzias_latipes
ENSTSYG00000030906	LSM4	99	72.185	ENSORLG00020014829	lsm4	61	96.591	Oryzias_latipes_hni
ENSTSYG00000030906	LSM4	99	84.397	ENSORLG00015010205	lsm4	61	96.591	Oryzias_latipes_hsok
ENSTSYG00000030906	LSM4	100	82.734	ENSOMEG00000003606	lsm4	61	96.591	Oryzias_melastigma
ENSTSYG00000030906	LSM4	71	97.980	ENSOGAG00000027992	LSM4	60	98.851	Otolemur_garnettii
ENSTSYG00000030906	LSM4	95	99.160	ENSOARG00000012553	LSM4	94	99.160	Ovis_aries
ENSTSYG00000030906	LSM4	100	99.281	ENSPPAG00000044045	-	100	99.281	Pan_paniscus
ENSTSYG00000030906	LSM4	100	99.281	ENSPPRG00000018264	LSM4	100	99.281	Panthera_pardus
ENSTSYG00000030906	LSM4	100	99.200	ENSPTIG00000006306	LSM4	100	99.275	Panthera_tigris_altaica
ENSTSYG00000030906	LSM4	100	99.281	ENSPTRG00000031470	LSM4	100	99.281	Pan_troglodytes
ENSTSYG00000030906	LSM4	100	99.281	ENSPANG00000014399	LSM4	100	99.281	Papio_anubis
ENSTSYG00000030906	LSM4	99	81.022	ENSPKIG00000006154	lsm4	62	97.727	Paramormyrops_kingsleyae
ENSTSYG00000030906	LSM4	99	80.435	ENSPSIG00000012358	LSM4	100	89.130	Pelodiscus_sinensis
ENSTSYG00000030906	LSM4	100	97.122	ENSPEMG00000001358	Lsm4	100	97.122	Peromyscus_maniculatus_bairdii
ENSTSYG00000030906	LSM4	99	75.694	ENSPLAG00000016267	lsm4	62	97.727	Poecilia_latipinna
ENSTSYG00000030906	LSM4	98	77.698	ENSPMEG00000016378	lsm4	63	97.701	Poecilia_mexicana
ENSTSYG00000030906	LSM4	100	99.281	ENSPPYG00000009736	LSM4	100	99.281	Pongo_abelii
ENSTSYG00000030906	LSM4	99	97.581	ENSPCAG00000008513	LSM4	100	97.581	Procavia_capensis
ENSTSYG00000030906	LSM4	100	98.561	ENSPCOG00000019837	LSM4	100	98.561	Propithecus_coquereli
ENSTSYG00000030906	LSM4	100	99.281	ENSPVAG00000015383	LSM4	100	99.281	Pteropus_vampyrus
ENSTSYG00000030906	LSM4	79	83.065	ENSPNYG00000016794	lsm4	60	97.727	Pundamilia_nyererei
ENSTSYG00000030906	LSM4	96	82.836	ENSPNAG00000016598	lsm4	65	97.701	Pygocentrus_nattereri
ENSTSYG00000030906	LSM4	100	97.122	ENSRNOG00000019572	Lsm4	100	97.122	Rattus_norvegicus
ENSTSYG00000030906	LSM4	100	99.281	ENSRBIG00000024717	LSM4	100	99.281	Rhinopithecus_bieti
ENSTSYG00000030906	LSM4	100	99.281	ENSRROG00000045706	LSM4	100	99.281	Rhinopithecus_roxellana
ENSTSYG00000030906	LSM4	100	99.200	ENSSBOG00000022455	LSM4	100	99.200	Saimiri_boliviensis_boliviensis
ENSTSYG00000030906	LSM4	100	95.683	ENSSHAG00000011559	LSM4	100	95.683	Sarcophilus_harrisii
ENSTSYG00000030906	LSM4	99	79.562	ENSSFOG00015021067	lsm4	62	97.727	Scleropages_formosus
ENSTSYG00000030906	LSM4	99	71.127	ENSSMAG00000021020	lsm4	95	71.831	Scophthalmus_maximus
ENSTSYG00000030906	LSM4	71	95.960	ENSSDUG00000009588	lsm4	53	97.727	Seriola_dumerili
ENSTSYG00000030906	LSM4	71	95.960	ENSSLDG00000006827	lsm4	52	97.727	Seriola_lalandi_dorsalis
ENSTSYG00000030906	LSM4	63	97.701	ENSSPUG00000010166	LSM4	56	97.701	Sphenodon_punctatus
ENSTSYG00000030906	LSM4	99	72.848	ENSSPAG00000011615	lsm4	58	97.727	Stegastes_partitus
ENSTSYG00000030906	LSM4	100	99.281	ENSSSCG00000034314	LSM4	100	99.281	Sus_scrofa
ENSTSYG00000030906	LSM4	79	80.645	ENSTRUG00000021737	lsm4	62	95.455	Takifugu_rubripes
ENSTSYG00000030906	LSM4	99	80.000	ENSTNIG00000010191	lsm4	61	96.591	Tetraodon_nigroviridis
ENSTSYG00000030906	LSM4	100	99.200	ENSUAMG00000000665	LSM4	99	99.275	Ursus_americanus
ENSTSYG00000030906	LSM4	100	99.281	ENSUMAG00000009013	LSM4	100	99.281	Ursus_maritimus
ENSTSYG00000030906	LSM4	100	99.200	ENSVVUG00000008136	LSM4	71	99.275	Vulpes_vulpes
ENSTSYG00000030906	LSM4	100	90.647	ENSXETG00000024933	lsm4	100	88.489	Xenopus_tropicalis