EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTTRG00000001175 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Minus strand
Length: 224527 bases
Position: chrGeneScaffold_3179:214332-438858
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000001102	EST1_DNA_bind	PF10373.9	2.4e-56	1	1
ENSTTRP00000001102	PIN_4	PF13638.6	1.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000001175	SMG6-201	4233	-	ENSTTRP00000001102	1410 (aa)	-	UPI00018B8C3B

Gene Model

Click here to download ENSTTRG00000001175's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000001175's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000001175	SMG6	91	91.667	ENSG00000070366	SMG6	100	94.512	Homo_sapiens
ENSTTRG00000001175	SMG6	74	56.429	ENSAPOG00000019448	smg6	66	57.143	Acanthochromis_polyacanthus
ENSTTRG00000001175	SMG6	91	92.576	ENSAMEG00000007632	SMG6	91	92.576	Ailuropoda_melanoleuca
ENSTTRG00000001175	SMG6	62	56.143	ENSAOCG00000002630	smg6	66	56.857	Amphiprion_ocellaris
ENSTTRG00000001175	SMG6	74	56.143	ENSAPEG00000019101	smg6	66	56.857	Amphiprion_percula
ENSTTRG00000001175	SMG6	74	56.553	ENSATEG00000006483	smg6	65	56.757	Anabas_testudineus
ENSTTRG00000001175	SMG6	78	66.667	ENSACAG00000011783	SMG6	88	68.136	Anolis_carolinensis
ENSTTRG00000001175	SMG6	91	91.364	ENSANAG00000035760	SMG6	93	91.364	Aotus_nancymaae
ENSTTRG00000001175	SMG6	62	56.815	ENSACLG00000005288	smg6	71	56.877	Astatotilapia_calliptera
ENSTTRG00000001175	SMG6	59	59.823	ENSAMXG00000017326	smg6	89	59.259	Astyanax_mexicanus
ENSTTRG00000001175	SMG6	91	92.879	ENSBTAG00000000267	SMG6	91	92.879	Bos_taurus
ENSTTRG00000001175	SMG6	91	91.667	ENSCJAG00000001820	SMG6	91	91.667	Callithrix_jacchus
ENSTTRG00000001175	SMG6	91	92.273	ENSCAFG00000019260	SMG6	91	92.273	Canis_familiaris
ENSTTRG00000001175	SMG6	91	92.273	ENSCAFG00020009770	SMG6	91	92.273	Canis_lupus_dingo
ENSTTRG00000001175	SMG6	91	92.879	ENSCHIG00000021998	SMG6	91	92.879	Capra_hircus
ENSTTRG00000001175	SMG6	91	90.455	ENSTSYG00000003406	SMG6	100	89.432	Carlito_syrichta
ENSTTRG00000001175	SMG6	81	93.750	ENSCAPG00000016197	SMG6	88	93.750	Cavia_aperea
ENSTTRG00000001175	SMG6	91	90.288	ENSCPOG00000014878	SMG6	97	92.544	Cavia_porcellus
ENSTTRG00000001175	SMG6	91	91.515	ENSCCAG00000035801	SMG6	91	91.515	Cebus_capucinus
ENSTTRG00000001175	SMG6	91	91.515	ENSCATG00000031956	SMG6	91	91.515	Cercocebus_atys
ENSTTRG00000001175	SMG6	91	90.909	ENSCLAG00000006748	SMG6	94	93.750	Chinchilla_lanigera
ENSTTRG00000001175	SMG6	91	91.818	ENSCSAG00000013800	SMG6	91	91.818	Chlorocebus_sabaeus
ENSTTRG00000001175	SMG6	91	78.399	ENSCPBG00000020369	SMG6	91	78.399	Chrysemys_picta_bellii
ENSTTRG00000001175	SMG6	89	91.364	ENSCANG00000031764	SMG6	100	89.628	Colobus_angolensis_palliatus
ENSTTRG00000001175	SMG6	89	85.690	ENSCGRG00000007782	Smg6	90	85.690	Cricetulus_griseus_crigri
ENSTTRG00000001175	SMG6	77	56.894	ENSCSEG00000012757	smg6	72	57.247	Cynoglossus_semilaevis
ENSTTRG00000001175	SMG6	63	55.446	ENSCVAG00000012789	smg6	66	56.596	Cyprinodon_variegatus
ENSTTRG00000001175	SMG6	89	58.772	ENSDARG00000100481	smg6	82	58.997	Danio_rerio
ENSTTRG00000001175	SMG6	91	92.273	ENSDNOG00000048283	SMG6	91	92.273	Dasypus_novemcinctus
ENSTTRG00000001175	SMG6	89	92.200	ENSDORG00000016614	Smg6	94	96.847	Dipodomys_ordii
ENSTTRG00000001175	SMG6	81	86.705	ENSETEG00000016790	SMG6	81	86.705	Echinops_telfairi
ENSTTRG00000001175	SMG6	52	52.256	ENSEBUG00000005059	smg6	51	48.248	Eptatretus_burgeri
ENSTTRG00000001175	SMG6	91	92.553	ENSEASG00005009318	SMG6	90	92.553	Equus_asinus_asinus
ENSTTRG00000001175	SMG6	91	92.401	ENSECAG00000006519	SMG6	90	92.401	Equus_caballus
ENSTTRG00000001175	SMG6	89	86.774	ENSEEUG00000003493	SMG6	89	86.774	Erinaceus_europaeus
ENSTTRG00000001175	SMG6	91	92.879	ENSFCAG00000028817	SMG6	91	92.879	Felis_catus
ENSTTRG00000001175	SMG6	89	78.788	ENSFALG00000006538	SMG6	90	78.788	Ficedula_albicollis
ENSTTRG00000001175	SMG6	91	91.212	ENSFDAG00000015106	SMG6	95	92.920	Fukomys_damarensis
ENSTTRG00000001175	SMG6	74	54.610	ENSFHEG00000013282	smg6	66	55.540	Fundulus_heteroclitus
ENSTTRG00000001175	SMG6	91	79.425	ENSGALG00000003108	SMG6	89	79.274	Gallus_gallus
ENSTTRG00000001175	SMG6	74	55.966	ENSGAFG00000000379	smg6	66	55.824	Gambusia_affinis
ENSTTRG00000001175	SMG6	81	57.625	ENSGACG00000020521	smg6	90	57.372	Gasterosteus_aculeatus
ENSTTRG00000001175	SMG6	89	78.939	ENSGAGG00000025617	SMG6	90	78.852	Gopherus_agassizii
ENSTTRG00000001175	SMG6	91	91.818	ENSGGOG00000017156	SMG6	91	91.818	Gorilla_gorilla
ENSTTRG00000001175	SMG6	77	56.815	ENSHBUG00000021311	smg6	66	56.958	Haplochromis_burtoni
ENSTTRG00000001175	SMG6	91	90.758	ENSHGLG00000012882	SMG6	95	92.478	Heterocephalus_glaber_female
ENSTTRG00000001175	SMG6	91	90.758	ENSHGLG00100017815	SMG6	95	92.478	Heterocephalus_glaber_male
ENSTTRG00000001175	SMG6	68	55.147	ENSHCOG00000008761	smg6	86	55.425	Hippocampus_comes
ENSTTRG00000001175	SMG6	74	58.824	ENSIPUG00000012493	smg6	67	58.211	Ictalurus_punctatus
ENSTTRG00000001175	SMG6	91	92.273	ENSSTOG00000028127	SMG6	97	93.886	Ictidomys_tridecemlineatus
ENSTTRG00000001175	SMG6	70	95.291	ENSJJAG00000015367	Smg6	84	89.086	Jaculus_jaculus
ENSTTRG00000001175	SMG6	65	57.305	ENSKMAG00000000279	smg6	67	57.265	Kryptolebias_marmoratus
ENSTTRG00000001175	SMG6	77	55.128	ENSLBEG00000002184	smg6	68	55.619	Labrus_bergylta
ENSTTRG00000001175	SMG6	63	63.056	ENSLOCG00000006448	smg6	90	63.056	Lepisosteus_oculatus
ENSTTRG00000001175	SMG6	91	91.061	ENSLAFG00000001261	SMG6	91	91.061	Loxodonta_africana
ENSTTRG00000001175	SMG6	91	91.818	ENSMFAG00000003394	SMG6	91	91.818	Macaca_fascicularis
ENSTTRG00000001175	SMG6	91	91.667	ENSMMUG00000023161	SMG6	91	91.667	Macaca_mulatta
ENSTTRG00000001175	SMG6	91	87.580	ENSMNEG00000044592	SMG6	91	87.580	Macaca_nemestrina
ENSTTRG00000001175	SMG6	83	100.000	ENSMLEG00000029353	SMG6	90	100.000	Mandrillus_leucophaeus
ENSTTRG00000001175	SMG6	74	57.183	ENSMAMG00000020119	smg6	71	57.386	Mastacembelus_armatus
ENSTTRG00000001175	SMG6	62	56.815	ENSMZEG00005024736	smg6	66	56.958	Maylandia_zebra
ENSTTRG00000001175	SMG6	64	80.887	ENSMGAG00000005401	-	87	80.887	Meleagris_gallopavo
ENSTTRG00000001175	SMG6	91	91.970	ENSMICG00000012913	SMG6	91	91.970	Microcebus_murinus
ENSTTRG00000001175	SMG6	91	56.912	ENSMMOG00000010883	smg6	91	57.949	Mola_mola
ENSTTRG00000001175	SMG6	91	89.697	ENSMODG00000010622	SMG6	91	89.697	Monodelphis_domestica
ENSTTRG00000001175	SMG6	74	56.491	ENSMALG00000001106	smg6	65	56.695	Monopterus_albus
ENSTTRG00000001175	SMG6	91	91.364	MGP_CAROLIEiJ_G0016729	Smg6	95	94.248	Mus_caroli
ENSTTRG00000001175	SMG6	91	91.364	ENSMUSG00000038290	Smg6	95	94.690	Mus_musculus
ENSTTRG00000001175	SMG6	91	90.758	MGP_PahariEiJ_G0017866	Smg6	95	94.690	Mus_pahari
ENSTTRG00000001175	SMG6	91	91.364	MGP_SPRETEiJ_G0017572	Smg6	96	93.860	Mus_spretus
ENSTTRG00000001175	SMG6	91	92.273	ENSMPUG00000013046	SMG6	91	92.273	Mustela_putorius_furo
ENSTTRG00000001175	SMG6	91	91.818	ENSMLUG00000005739	SMG6	91	91.818	Myotis_lucifugus
ENSTTRG00000001175	SMG6	89	90.909	ENSNGAG00000007287	Smg6	95	92.478	Nannospalax_galili
ENSTTRG00000001175	SMG6	79	55.700	ENSNBRG00000009511	smg6	71	55.683	Neolamprologus_brichardi
ENSTTRG00000001175	SMG6	89	91.818	ENSNLEG00000017171	SMG6	100	89.824	Nomascus_leucogenys
ENSTTRG00000001175	SMG6	89	88.182	ENSMEUG00000015804	SMG6	90	88.182	Notamacropus_eugenii
ENSTTRG00000001175	SMG6	59	92.488	ENSOPRG00000000579	SMG6	79	95.263	Ochotona_princeps
ENSTTRG00000001175	SMG6	89	90.966	ENSODEG00000008038	SMG6	94	90.966	Octodon_degus
ENSTTRG00000001175	SMG6	91	57.102	ENSONIG00000005594	smg6	91	57.389	Oreochromis_niloticus
ENSTTRG00000001175	SMG6	91	90.772	ENSOCUG00000013018	SMG6	91	91.225	Oryctolagus_cuniculus
ENSTTRG00000001175	SMG6	74	54.908	ENSORLG00000003317	smg6	66	55.619	Oryzias_latipes
ENSTTRG00000001175	SMG6	74	55.000	ENSORLG00020015343	smg6	66	55.000	Oryzias_latipes_hni
ENSTTRG00000001175	SMG6	74	54.623	ENSORLG00015020454	smg6	66	55.334	Oryzias_latipes_hsok
ENSTTRG00000001175	SMG6	74	54.701	ENSOMEG00000010838	smg6	67	55.271	Oryzias_melastigma
ENSTTRG00000001175	SMG6	91	91.515	ENSOGAG00000004483	SMG6	91	91.515	Otolemur_garnettii
ENSTTRG00000001175	SMG6	91	93.030	ENSOARG00000015076	SMG6	91	93.030	Ovis_aries
ENSTTRG00000001175	SMG6	91	91.818	ENSPPAG00000043296	SMG6	91	91.818	Pan_paniscus
ENSTTRG00000001175	SMG6	91	92.926	ENSPPRG00000014581	SMG6	91	92.926	Panthera_pardus
ENSTTRG00000001175	SMG6	89	92.879	ENSPTIG00000008925	SMG6	100	90.998	Panthera_tigris_altaica
ENSTTRG00000001175	SMG6	91	91.818	ENSPTRG00000008544	SMG6	100	89.824	Pan_troglodytes
ENSTTRG00000001175	SMG6	91	91.818	ENSPANG00000024588	SMG6	91	91.818	Papio_anubis
ENSTTRG00000001175	SMG6	79	82.576	ENSPSIG00000006660	SMG6	86	82.576	Pelodiscus_sinensis
ENSTTRG00000001175	SMG6	91	57.518	ENSPMGG00000000844	smg6	97	57.518	Periophthalmus_magnuspinnatus
ENSTTRG00000001175	SMG6	91	91.818	ENSPEMG00000020707	Smg6	97	93.805	Peromyscus_maniculatus_bairdii
ENSTTRG00000001175	SMG6	91	57.536	ENSPFOG00000012035	smg6	91	57.413	Poecilia_formosa
ENSTTRG00000001175	SMG6	63	55.983	ENSPLAG00000017660	smg6	66	55.983	Poecilia_latipinna
ENSTTRG00000001175	SMG6	63	56.534	ENSPMEG00000000258	smg6	66	56.410	Poecilia_mexicana
ENSTTRG00000001175	SMG6	74	55.256	ENSPREG00000010066	smg6	66	55.256	Poecilia_reticulata
ENSTTRG00000001175	SMG6	90	88.376	ENSPPYG00000007790	SMG6	90	88.376	Pongo_abelii
ENSTTRG00000001175	SMG6	91	85.167	ENSPCAG00000000552	SMG6	91	85.167	Procavia_capensis
ENSTTRG00000001175	SMG6	91	92.121	ENSPCOG00000020925	SMG6	91	92.121	Propithecus_coquereli
ENSTTRG00000001175	SMG6	76	100.000	ENSPVAG00000002159	SMG6	76	100.000	Pteropus_vampyrus
ENSTTRG00000001175	SMG6	77	58.112	ENSPNYG00000024151	smg6	70	58.112	Pundamilia_nyererei
ENSTTRG00000001175	SMG6	78	56.313	ENSPNAG00000015480	smg6	83	56.122	Pygocentrus_nattereri
ENSTTRG00000001175	SMG6	91	91.667	ENSRNOG00000003041	Smg6	91	91.667	Rattus_norvegicus
ENSTTRG00000001175	SMG6	91	91.515	ENSRBIG00000024746	SMG6	91	91.515	Rhinopithecus_bieti
ENSTTRG00000001175	SMG6	91	91.515	ENSRROG00000030423	SMG6	100	89.432	Rhinopithecus_roxellana
ENSTTRG00000001175	SMG6	91	91.515	ENSSBOG00000022518	SMG6	91	88.316	Saimiri_boliviensis_boliviensis
ENSTTRG00000001175	SMG6	89	88.333	ENSSHAG00000010045	SMG6	89	88.333	Sarcophilus_harrisii
ENSTTRG00000001175	SMG6	63	59.768	ENSSFOG00015005436	smg6	63	59.596	Scleropages_formosus
ENSTTRG00000001175	SMG6	74	56.046	ENSSMAG00000019777	smg6	66	55.903	Scophthalmus_maximus
ENSTTRG00000001175	SMG6	80	56.330	ENSSDUG00000016412	smg6	71	56.534	Seriola_dumerili
ENSTTRG00000001175	SMG6	76	58.904	ENSSLDG00000020747	smg6	74	59.119	Seriola_lalandi_dorsalis
ENSTTRG00000001175	SMG6	91	77.410	ENSSPUG00000007152	SMG6	90	77.108	Sphenodon_punctatus
ENSTTRG00000001175	SMG6	74	56.509	ENSSPAG00000015633	smg6	66	56.509	Stegastes_partitus
ENSTTRG00000001175	SMG6	91	92.273	ENSSSCG00000017826	SMG6	89	97.119	Sus_scrofa
ENSTTRG00000001175	SMG6	91	79.091	ENSTGUG00000005836	SMG6	91	79.091	Taeniopygia_guttata
ENSTTRG00000001175	SMG6	79	56.831	ENSTRUG00000000358	smg6	77	56.477	Takifugu_rubripes
ENSTTRG00000001175	SMG6	91	57.431	ENSTNIG00000016164	smg6	91	57.287	Tetraodon_nigroviridis
ENSTTRG00000001175	SMG6	91	86.465	ENSTBEG00000011424	SMG6	91	86.465	Tupaia_belangeri
ENSTTRG00000001175	SMG6	91	92.006	ENSUAMG00000025152	SMG6	91	91.855	Ursus_americanus
ENSTTRG00000001175	SMG6	89	92.576	ENSUMAG00000009306	SMG6	91	92.576	Ursus_maritimus
ENSTTRG00000001175	SMG6	75	96.296	ENSVPAG00000000225	SMG6	77	96.296	Vicugna_pacos
ENSTTRG00000001175	SMG6	91	92.273	ENSVVUG00000021727	SMG6	91	92.273	Vulpes_vulpes
ENSTTRG00000001175	SMG6	89	64.414	ENSXETG00000023799	SMG6	90	64.414	Xenopus_tropicalis
ENSTTRG00000001175	SMG6	74	57.143	ENSXCOG00000009867	smg6	65	56.848	Xiphophorus_couchianus
ENSTTRG00000001175	SMG6	74	55.824	ENSXMAG00000010321	smg6	66	55.824	Xiphophorus_maculatus