EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTTRG00000001401 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Minus strand
Length: 26564 bases
Position: chrGeneScaffold_2209:116569-143132
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000001319	EST1	PF10374.9	4.5e-24	1	1
ENSTTRP00000001319	EST1_DNA_bind	PF10373.9	1.2e-40	1	2
ENSTTRP00000001319	EST1_DNA_bind	PF10373.9	1.2e-40	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000001402	SMG5-201	3045	-	ENSTTRP00000001319	1014 (aa)	-	UPI00018B62E9

Gene Model

Click here to download ENSTTRG00000001401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000001401's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000001401	SMG5	100	91.831	ENSG00000198952	SMG5	100	91.831	Homo_sapiens
ENSTTRG00000001401	SMG5	99	63.153	ENSAPOG00000019690	smg5	99	62.770	Acanthochromis_polyacanthus
ENSTTRG00000001401	SMG5	94	91.032	ENSAMEG00000014458	SMG5	97	91.032	Ailuropoda_melanoleuca
ENSTTRG00000001401	SMG5	99	60.983	ENSACIG00000001353	smg5	99	61.850	Amphilophus_citrinellus
ENSTTRG00000001401	SMG5	94	63.255	ENSAOCG00000019483	smg5	99	58.415	Amphiprion_ocellaris
ENSTTRG00000001401	SMG5	94	64.536	ENSAPEG00000022949	smg5	95	64.536	Amphiprion_percula
ENSTTRG00000001401	SMG5	99	62.331	ENSATEG00000005348	smg5	99	63.311	Anabas_testudineus
ENSTTRG00000001401	SMG5	94	76.892	ENSAPLG00000010263	SMG5	97	76.690	Anas_platyrhynchos
ENSTTRG00000001401	SMG5	100	91.535	ENSANAG00000032899	SMG5	100	91.535	Aotus_nancymaae
ENSTTRG00000001401	SMG5	99	60.907	ENSACLG00000009311	smg5	99	61.716	Astatotilapia_calliptera
ENSTTRG00000001401	SMG5	94	42.901	ENSBTAG00000021747	-	94	42.636	Bos_taurus
ENSTTRG00000001401	SMG5	100	92.028	ENSBTAG00000009435	SMG5	100	92.028	Bos_taurus
ENSTTRG00000001401	SMG5	100	91.535	ENSCJAG00000005684	SMG5	100	91.535	Callithrix_jacchus
ENSTTRG00000001401	SMG5	100	89.567	ENSCAFG00000016839	SMG5	100	89.567	Canis_familiaris
ENSTTRG00000001401	SMG5	100	89.567	ENSCAFG00020006061	SMG5	100	89.567	Canis_lupus_dingo
ENSTTRG00000001401	SMG5	100	91.929	ENSCHIG00000007709	SMG5	100	91.929	Capra_hircus
ENSTTRG00000001401	SMG5	94	43.282	ENSCHIG00000006323	-	95	43.821	Capra_hircus
ENSTTRG00000001401	SMG5	100	91.052	ENSTSYG00000004099	SMG5	100	91.052	Carlito_syrichta
ENSTTRG00000001401	SMG5	94	73.021	ENSCAPG00000003631	SMG5	100	72.586	Cavia_aperea
ENSTTRG00000001401	SMG5	100	89.587	ENSCPOG00000015696	SMG5	100	89.980	Cavia_porcellus
ENSTTRG00000001401	SMG5	100	91.634	ENSCCAG00000027409	SMG5	100	91.634	Cebus_capucinus
ENSTTRG00000001401	SMG5	100	91.831	ENSCATG00000030539	SMG5	100	91.831	Cercocebus_atys
ENSTTRG00000001401	SMG5	100	89.980	ENSCLAG00000003983	SMG5	100	90.373	Chinchilla_lanigera
ENSTTRG00000001401	SMG5	100	91.732	ENSCSAG00000002120	SMG5	100	91.732	Chlorocebus_sabaeus
ENSTTRG00000001401	SMG5	51	92.336	ENSCHOG00000008741	-	53	92.336	Choloepus_hoffmanni
ENSTTRG00000001401	SMG5	93	75.761	ENSCPBG00000025848	SMG5	100	76.775	Chrysemys_picta_bellii
ENSTTRG00000001401	SMG5	93	32.508	ENSCING00000008706	-	99	32.136	Ciona_intestinalis
ENSTTRG00000001401	SMG5	100	87.697	ENSCANG00000029208	SMG5	100	87.697	Colobus_angolensis_palliatus
ENSTTRG00000001401	SMG5	100	86.935	ENSCGRG00001006336	Smg5	100	87.721	Cricetulus_griseus_chok1gshd
ENSTTRG00000001401	SMG5	94	89.792	ENSCGRG00000005111	Smg5	97	90.625	Cricetulus_griseus_crigri
ENSTTRG00000001401	SMG5	99	61.193	ENSCSEG00000014220	smg5	99	61.719	Cynoglossus_semilaevis
ENSTTRG00000001401	SMG5	99	56.530	ENSCVAG00000000529	smg5	99	57.240	Cyprinodon_variegatus
ENSTTRG00000001401	SMG5	91	35.776	ENSDNOG00000039862	-	98	35.022	Dasypus_novemcinctus
ENSTTRG00000001401	SMG5	100	86.713	ENSDNOG00000000051	SMG5	100	86.713	Dasypus_novemcinctus
ENSTTRG00000001401	SMG5	100	89.096	ENSDORG00000010382	Smg5	100	89.489	Dipodomys_ordii
ENSTTRG00000001401	SMG5	62	30.968	FBgn0019890	Smg5	59	30.968	Drosophila_melanogaster
ENSTTRG00000001401	SMG5	82	80.575	ENSETEG00000010336	SMG5	83	90.244	Echinops_telfairi
ENSTTRG00000001401	SMG5	87	44.653	ENSEBUG00000003739	smg5	94	44.518	Eptatretus_burgeri
ENSTTRG00000001401	SMG5	100	92.028	ENSEASG00005019122	SMG5	100	92.028	Equus_asinus_asinus
ENSTTRG00000001401	SMG5	100	92.028	ENSECAG00000001389	SMG5	100	92.028	Equus_caballus
ENSTTRG00000001401	SMG5	69	98.726	ENSEEUG00000012690	SMG5	70	98.726	Erinaceus_europaeus
ENSTTRG00000001401	SMG5	99	61.175	ENSELUG00000012585	smg5	99	61.598	Esox_lucius
ENSTTRG00000001401	SMG5	100	89.665	ENSFCAG00000011783	SMG5	100	89.665	Felis_catus
ENSTTRG00000001401	SMG5	55	81.593	ENSFALG00000001166	-	99	78.045	Ficedula_albicollis
ENSTTRG00000001401	SMG5	94	91.042	ENSFDAG00000017388	SMG5	97	90.833	Fukomys_damarensis
ENSTTRG00000001401	SMG5	94	61.157	ENSFHEG00000013939	smg5	93	69.691	Fundulus_heteroclitus
ENSTTRG00000001401	SMG5	99	57.801	ENSGMOG00000007310	smg5	99	57.872	Gadus_morhua
ENSTTRG00000001401	SMG5	99	73.103	ENSGALG00000029918	-	100	72.960	Gallus_gallus
ENSTTRG00000001401	SMG5	74	70.136	ENSGAFG00000021691	smg5	97	61.661	Gambusia_affinis
ENSTTRG00000001401	SMG5	100	74.573	ENSGAGG00000016131	SMG5	100	74.739	Gopherus_agassizii
ENSTTRG00000001401	SMG5	100	91.732	ENSGGOG00000010932	SMG5	100	91.732	Gorilla_gorilla
ENSTTRG00000001401	SMG5	99	60.443	ENSHBUG00000008654	smg5	99	60.724	Haplochromis_burtoni
ENSTTRG00000001401	SMG5	100	87.819	ENSHGLG00000019152	SMG5	100	88.016	Heterocephalus_glaber_female
ENSTTRG00000001401	SMG5	90	87.295	ENSHGLG00100015948	SMG5	99	87.514	Heterocephalus_glaber_male
ENSTTRG00000001401	SMG5	82	74.185	ENSHCOG00000010229	smg5	80	73.913	Hippocampus_comes
ENSTTRG00000001401	SMG5	99	58.032	ENSIPUG00000006624	Smg5	99	59.091	Ictalurus_punctatus
ENSTTRG00000001401	SMG5	100	90.846	ENSSTOG00000001780	SMG5	100	90.846	Ictidomys_tridecemlineatus
ENSTTRG00000001401	SMG5	100	87.144	ENSJJAG00000022763	Smg5	100	87.537	Jaculus_jaculus
ENSTTRG00000001401	SMG5	50	56.410	ENSKMAG00000014586	smg5	99	58.044	Kryptolebias_marmoratus
ENSTTRG00000001401	SMG5	99	61.969	ENSLBEG00000002145	smg5	99	61.992	Labrus_bergylta
ENSTTRG00000001401	SMG5	100	63.118	ENSLACG00000010521	SMG5	100	63.333	Latimeria_chalumnae
ENSTTRG00000001401	SMG5	96	72.770	ENSLOCG00000008380	smg5	99	59.199	Lepisosteus_oculatus
ENSTTRG00000001401	SMG5	100	89.764	ENSLAFG00000006241	SMG5	100	89.764	Loxodonta_africana
ENSTTRG00000001401	SMG5	100	91.732	ENSMFAG00000045357	SMG5	100	91.732	Macaca_fascicularis
ENSTTRG00000001401	SMG5	100	91.732	ENSMMUG00000000090	SMG5	100	91.732	Macaca_mulatta
ENSTTRG00000001401	SMG5	100	91.634	ENSMNEG00000044425	SMG5	100	91.634	Macaca_nemestrina
ENSTTRG00000001401	SMG5	100	86.092	ENSMLEG00000041192	SMG5	100	86.092	Mandrillus_leucophaeus
ENSTTRG00000001401	SMG5	99	57.270	ENSMAMG00000010683	smg5	100	59.168	Mastacembelus_armatus
ENSTTRG00000001401	SMG5	99	59.579	ENSMZEG00005015815	smg5	99	60.019	Maylandia_zebra
ENSTTRG00000001401	SMG5	63	55.909	ENSMZEG00005016543	smg5	100	55.825	Maylandia_zebra
ENSTTRG00000001401	SMG5	100	86.149	ENSMAUG00000010381	Smg5	100	87.033	Mesocricetus_auratus
ENSTTRG00000001401	SMG5	100	91.634	ENSMICG00000002257	SMG5	100	91.634	Microcebus_murinus
ENSTTRG00000001401	SMG5	100	86.569	ENSMOCG00000016590	Smg5	100	86.569	Microtus_ochrogaster
ENSTTRG00000001401	SMG5	99	54.749	ENSMMOG00000017199	smg5	99	55.925	Mola_mola
ENSTTRG00000001401	SMG5	83	35.762	ENSMODG00000004532	-	79	38.275	Monodelphis_domestica
ENSTTRG00000001401	SMG5	86	85.878	ENSMODG00000016901	SMG5	96	86.338	Monodelphis_domestica
ENSTTRG00000001401	SMG5	75	35.904	ENSMODG00000010675	-	82	36.702	Monodelphis_domestica
ENSTTRG00000001401	SMG5	75	37.076	ENSMODG00000004735	-	82	37.135	Monodelphis_domestica
ENSTTRG00000001401	SMG5	94	33.980	ENSMODG00000004511	-	96	33.537	Monodelphis_domestica
ENSTTRG00000001401	SMG5	99	56.100	ENSMALG00000010375	smg5	99	55.605	Monopterus_albus
ENSTTRG00000001401	SMG5	100	87.033	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSTTRG00000001401	SMG5	100	87.132	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSTTRG00000001401	SMG5	100	86.850	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSTTRG00000001401	SMG5	100	86.935	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSTTRG00000001401	SMG5	93	91.368	ENSMPUG00000004546	SMG5	100	91.368	Mustela_putorius_furo
ENSTTRG00000001401	SMG5	100	89.628	ENSMLUG00000008518	SMG5	100	89.530	Myotis_lucifugus
ENSTTRG00000001401	SMG5	100	87.807	ENSNGAG00000020706	Smg5	100	88.201	Nannospalax_galili
ENSTTRG00000001401	SMG5	97	59.215	ENSNBRG00000004332	smg5	98	60.000	Neolamprologus_brichardi
ENSTTRG00000001401	SMG5	100	91.535	ENSNLEG00000012439	SMG5	100	91.535	Nomascus_leucogenys
ENSTTRG00000001401	SMG5	100	83.382	ENSMEUG00000012834	SMG5	100	82.498	Notamacropus_eugenii
ENSTTRG00000001401	SMG5	100	89.764	ENSOPRG00000009152	SMG5	100	89.764	Ochotona_princeps
ENSTTRG00000001401	SMG5	100	89.961	ENSODEG00000012237	SMG5	100	89.961	Octodon_degus
ENSTTRG00000001401	SMG5	99	56.510	ENSONIG00000008632	smg5	99	57.194	Oreochromis_niloticus
ENSTTRG00000001401	SMG5	94	94.050	ENSOCUG00000012886	SMG5	97	94.050	Oryctolagus_cuniculus
ENSTTRG00000001401	SMG5	85	40.046	ENSOCUG00000023338	-	93	39.931	Oryctolagus_cuniculus
ENSTTRG00000001401	SMG5	99	56.643	ENSORLG00000016239	smg5	99	58.655	Oryzias_latipes
ENSTTRG00000001401	SMG5	99	60.370	ENSORLG00020013127	smg5	99	62.183	Oryzias_latipes_hni
ENSTTRG00000001401	SMG5	99	60.485	ENSORLG00015019014	smg5	99	62.391	Oryzias_latipes_hsok
ENSTTRG00000001401	SMG5	82	58.127	ENSOMEG00000021330	smg5	92	58.244	Oryzias_melastigma
ENSTTRG00000001401	SMG5	100	89.961	ENSOGAG00000004966	SMG5	100	89.961	Otolemur_garnettii
ENSTTRG00000001401	SMG5	94	43.091	ENSOARG00000011963	-	94	42.857	Ovis_aries
ENSTTRG00000001401	SMG5	100	92.028	ENSOARG00000005778	SMG5	100	92.028	Ovis_aries
ENSTTRG00000001401	SMG5	100	91.634	ENSPPAG00000011996	SMG5	100	91.634	Pan_paniscus
ENSTTRG00000001401	SMG5	94	92.484	ENSPPRG00000011901	SMG5	97	92.484	Panthera_pardus
ENSTTRG00000001401	SMG5	93	85.338	ENSPTIG00000007892	SMG5	93	86.037	Panthera_tigris_altaica
ENSTTRG00000001401	SMG5	100	91.831	ENSPTRG00000049282	-	100	91.831	Pan_troglodytes
ENSTTRG00000001401	SMG5	100	91.831	ENSPTRG00000023925	SMG5	100	91.831	Pan_troglodytes
ENSTTRG00000001401	SMG5	100	91.831	ENSPANG00000011201	SMG5	100	91.831	Papio_anubis
ENSTTRG00000001401	SMG5	99	61.009	ENSPKIG00000009402	smg5	99	62.268	Paramormyrops_kingsleyae
ENSTTRG00000001401	SMG5	94	77.846	ENSPSIG00000015198	SMG5	97	78.154	Pelodiscus_sinensis
ENSTTRG00000001401	SMG5	99	56.427	ENSPMGG00000010465	smg5	99	56.578	Periophthalmus_magnuspinnatus
ENSTTRG00000001401	SMG5	52	46.168	ENSPEMG00000010022	-	89	46.916	Peromyscus_maniculatus_bairdii
ENSTTRG00000001401	SMG5	100	87.033	ENSPEMG00000001819	Smg5	100	87.819	Peromyscus_maniculatus_bairdii
ENSTTRG00000001401	SMG5	99	46.429	ENSPMAG00000000410	smg5	100	46.819	Petromyzon_marinus
ENSTTRG00000001401	SMG5	100	84.479	ENSPCIG00000018938	SMG5	100	84.872	Phascolarctos_cinereus
ENSTTRG00000001401	SMG5	93	70.362	ENSPMEG00000014105	smg5	99	62.620	Poecilia_mexicana
ENSTTRG00000001401	SMG5	93	63.908	ENSPREG00000017713	smg5	99	58.961	Poecilia_reticulata
ENSTTRG00000001401	SMG5	100	91.929	ENSPPYG00000000723	SMG5	100	91.929	Pongo_abelii
ENSTTRG00000001401	SMG5	75	99.156	ENSPCAG00000008412	SMG5	88	99.156	Procavia_capensis
ENSTTRG00000001401	SMG5	100	91.535	ENSPCOG00000004741	SMG5	100	91.535	Propithecus_coquereli
ENSTTRG00000001401	SMG5	100	81.398	ENSPVAG00000016748	SMG5	100	81.398	Pteropus_vampyrus
ENSTTRG00000001401	SMG5	99	56.102	ENSPNYG00000013397	smg5	99	56.864	Pundamilia_nyererei
ENSTTRG00000001401	SMG5	99	58.808	ENSPNAG00000028363	smg5	99	58.856	Pygocentrus_nattereri
ENSTTRG00000001401	SMG5	100	86.935	ENSRNOG00000019590	Smg5	100	87.525	Rattus_norvegicus
ENSTTRG00000001401	SMG5	100	91.535	ENSRBIG00000027428	SMG5	100	91.535	Rhinopithecus_bieti
ENSTTRG00000001401	SMG5	100	91.535	ENSRROG00000030035	SMG5	100	91.535	Rhinopithecus_roxellana
ENSTTRG00000001401	SMG5	100	91.831	ENSSBOG00000033339	SMG5	100	91.831	Saimiri_boliviensis_boliviensis
ENSTTRG00000001401	SMG5	61	39.766	ENSSHAG00000000935	-	86	40.854	Sarcophilus_harrisii
ENSTTRG00000001401	SMG5	94	34.339	ENSSHAG00000009572	-	93	33.951	Sarcophilus_harrisii
ENSTTRG00000001401	SMG5	94	86.943	ENSSHAG00000014163	SMG5	97	87.358	Sarcophilus_harrisii
ENSTTRG00000001401	SMG5	82	37.008	ENSSHAG00000000561	-	82	38.859	Sarcophilus_harrisii
ENSTTRG00000001401	SMG5	99	62.451	ENSSFOG00015024175	smg5	99	62.146	Scleropages_formosus
ENSTTRG00000001401	SMG5	99	57.156	ENSSMAG00000013059	smg5	99	58.645	Scophthalmus_maximus
ENSTTRG00000001401	SMG5	99	57.546	ENSSDUG00000007122	smg5	99	58.142	Seriola_dumerili
ENSTTRG00000001401	SMG5	99	57.839	ENSSLDG00000011418	smg5	99	58.437	Seriola_lalandi_dorsalis
ENSTTRG00000001401	SMG5	90	75.791	ENSSARG00000012484	SMG5	100	75.791	Sorex_araneus
ENSTTRG00000001401	SMG5	93	76.190	ENSSPUG00000002260	SMG5	100	75.887	Sphenodon_punctatus
ENSTTRG00000001401	SMG5	92	70.370	ENSSPAG00000014266	smg5	94	63.581	Stegastes_partitus
ENSTTRG00000001401	SMG5	100	93.307	ENSSSCG00000006490	-	100	96.421	Sus_scrofa
ENSTTRG00000001401	SMG5	99	71.429	ENSSSCG00000039308	-	100	72.217	Sus_scrofa
ENSTTRG00000001401	SMG5	99	75.767	ENSTGUG00000003748	-	100	75.586	Taeniopygia_guttata
ENSTTRG00000001401	SMG5	95	67.181	ENSTRUG00000012580	smg5	93	69.816	Takifugu_rubripes
ENSTTRG00000001401	SMG5	99	61.203	ENSTNIG00000010303	smg5	99	60.583	Tetraodon_nigroviridis
ENSTTRG00000001401	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSTTRG00000001401	SMG5	100	89.075	ENSUAMG00000013721	SMG5	100	89.075	Ursus_americanus
ENSTTRG00000001401	SMG5	94	87.409	ENSUMAG00000018041	SMG5	94	87.409	Ursus_maritimus
ENSTTRG00000001401	SMG5	90	89.531	ENSVPAG00000009446	SMG5	92	89.531	Vicugna_pacos
ENSTTRG00000001401	SMG5	100	89.567	ENSVVUG00000005887	SMG5	100	89.567	Vulpes_vulpes
ENSTTRG00000001401	SMG5	77	64.061	ENSXETG00000033791	SMG5	99	63.556	Xenopus_tropicalis
ENSTTRG00000001401	SMG5	59	72.209	ENSXCOG00000004379	smg5	96	59.890	Xiphophorus_couchianus
ENSTTRG00000001401	SMG5	93	69.683	ENSXMAG00000013499	smg5	99	62.488	Xiphophorus_maculatus