EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTTRG00000001562 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Plus strand
Length: 382683 bases
Position: chrGeneScaffold_1748:48514-431196
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000001472	CMS1	PF14617.6	6.6e-33	1	1
ENSTTRP00000001472	DEAD	PF00270.29	5.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000001562	CMSS1-201	828	-	ENSTTRP00000001472	275 (aa)	-	UPI00018B7DF0

Gene Model

Click here to download ENSTTRG00000001562's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000001562's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000001562	CMSS1	100	85.305	ENSG00000184220	CMSS1	100	85.305	Homo_sapiens
ENSTTRG00000001562	CMSS1	72	62.376	ENSAPOG00000010604	cmss1	82	62.376	Acanthochromis_polyacanthus
ENSTTRG00000001562	CMSS1	92	88.803	ENSAMEG00000004092	CMSS1	100	88.803	Ailuropoda_melanoleuca
ENSTTRG00000001562	CMSS1	72	53.000	ENSACIG00000021854	cmss1	91	51.667	Amphilophus_citrinellus
ENSTTRG00000001562	CMSS1	100	50.690	ENSAOCG00000013361	cmss1	100	52.901	Amphiprion_ocellaris
ENSTTRG00000001562	CMSS1	100	50.859	ENSAPEG00000005829	cmss1	100	52.901	Amphiprion_percula
ENSTTRG00000001562	CMSS1	100	51.903	ENSATEG00000008209	cmss1	100	52.595	Anabas_testudineus
ENSTTRG00000001562	CMSS1	82	67.391	ENSAPLG00000010542	CMSS1	100	66.522	Anas_platyrhynchos
ENSTTRG00000001562	CMSS1	92	59.091	ENSACAG00000011065	CMSS1	97	59.091	Anolis_carolinensis
ENSTTRG00000001562	CMSS1	100	86.786	ENSANAG00000023565	CMSS1	100	86.786	Aotus_nancymaae
ENSTTRG00000001562	CMSS1	100	49.485	ENSACLG00000027294	cmss1	100	50.515	Astatotilapia_calliptera
ENSTTRG00000001562	CMSS1	100	45.238	ENSAMXG00000002046	cmss1	100	46.441	Astyanax_mexicanus
ENSTTRG00000001562	CMSS1	100	88.889	ENSBTAG00000013663	CMSS1	100	88.889	Bos_taurus
ENSTTRG00000001562	CMSS1	100	86.429	ENSCJAG00000000610	CMSS1	100	86.429	Callithrix_jacchus
ENSTTRG00000001562	CMSS1	92	89.922	ENSCAFG00000009230	CMSS1	93	89.922	Canis_familiaris
ENSTTRG00000001562	CMSS1	83	82.328	ENSCAFG00020024156	-	76	78.776	Canis_lupus_dingo
ENSTTRG00000001562	CMSS1	93	89.189	ENSCAFG00020009464	-	95	89.189	Canis_lupus_dingo
ENSTTRG00000001562	CMSS1	92	89.105	ENSCHIG00000013003	CMSS1	93	89.105	Capra_hircus
ENSTTRG00000001562	CMSS1	92	86.434	ENSTSYG00000009266	CMSS1	99	86.434	Carlito_syrichta
ENSTTRG00000001562	CMSS1	80	70.044	ENSCAPG00000013584	CMSS1	100	70.044	Cavia_aperea
ENSTTRG00000001562	CMSS1	100	86.380	ENSCPOG00000014680	CMSS1	100	86.380	Cavia_porcellus
ENSTTRG00000001562	CMSS1	100	87.500	ENSCCAG00000034685	CMSS1	100	87.500	Cebus_capucinus
ENSTTRG00000001562	CMSS1	100	86.738	ENSCATG00000031980	CMSS1	100	86.738	Cercocebus_atys
ENSTTRG00000001562	CMSS1	82	90.393	ENSCLAG00000011241	CMSS1	98	90.393	Chinchilla_lanigera
ENSTTRG00000001562	CMSS1	88	88.163	ENSCSAG00000006024	CMSS1	100	88.163	Chlorocebus_sabaeus
ENSTTRG00000001562	CMSS1	100	67.384	ENSCHOG00000012098	CMSS1	100	67.384	Choloepus_hoffmanni
ENSTTRG00000001562	CMSS1	68	39.487	ENSCING00000014848	-	99	40.860	Ciona_intestinalis
ENSTTRG00000001562	CMSS1	100	86.380	ENSCANG00000031337	CMSS1	100	86.380	Colobus_angolensis_palliatus
ENSTTRG00000001562	CMSS1	100	79.211	ENSCGRG00001014305	Cmss1	100	79.211	Cricetulus_griseus_chok1gshd
ENSTTRG00000001562	CMSS1	92	79.688	ENSCGRG00000006722	Cmss1	99	79.688	Cricetulus_griseus_crigri
ENSTTRG00000001562	CMSS1	100	48.822	ENSCSEG00000004958	cmss1	100	50.340	Cynoglossus_semilaevis
ENSTTRG00000001562	CMSS1	100	51.042	ENSCVAG00000005039	cmss1	100	52.234	Cyprinodon_variegatus
ENSTTRG00000001562	CMSS1	100	46.333	ENSDARG00000112579	cmss1	100	48.333	Danio_rerio
ENSTTRG00000001562	CMSS1	93	83.588	ENSDNOG00000040418	CMSS1	92	84.170	Dasypus_novemcinctus
ENSTTRG00000001562	CMSS1	100	86.380	ENSDORG00000010461	Cmss1	100	86.380	Dipodomys_ordii
ENSTTRG00000001562	CMSS1	96	78.439	ENSEASG00005010966	CMSS1	99	88.584	Equus_asinus_asinus
ENSTTRG00000001562	CMSS1	95	85.714	ENSECAG00000015662	CMSS1	99	88.496	Equus_caballus
ENSTTRG00000001562	CMSS1	100	54.122	ENSEEUG00000007624	-	100	55.197	Erinaceus_europaeus
ENSTTRG00000001562	CMSS1	100	48.000	ENSELUG00000019459	cmss1	100	48.667	Esox_lucius
ENSTTRG00000001562	CMSS1	100	91.398	ENSFCAG00000044577	CMSS1	100	91.398	Felis_catus
ENSTTRG00000001562	CMSS1	85	61.088	ENSFALG00000005816	CMSS1	100	61.088	Ficedula_albicollis
ENSTTRG00000001562	CMSS1	81	89.035	ENSFDAG00000012577	CMSS1	100	89.035	Fukomys_damarensis
ENSTTRG00000001562	CMSS1	81	60.173	ENSFHEG00000012008	cmss1	95	60.173	Fundulus_heteroclitus
ENSTTRG00000001562	CMSS1	99	50.000	ENSGMOG00000016729	cmss1	100	50.352	Gadus_morhua
ENSTTRG00000001562	CMSS1	96	61.049	ENSGALG00000015267	CMSS1	100	61.686	Gallus_gallus
ENSTTRG00000001562	CMSS1	74	61.836	ENSGAFG00000021217	cmss1	77	61.386	Gambusia_affinis
ENSTTRG00000001562	CMSS1	99	46.996	ENSGACG00000002798	cmss1	100	48.057	Gasterosteus_aculeatus
ENSTTRG00000001562	CMSS1	92	62.791	ENSGAGG00000019861	CMSS1	97	62.791	Gopherus_agassizii
ENSTTRG00000001562	CMSS1	92	87.984	ENSGGOG00000014125	CMSS1	99	87.984	Gorilla_gorilla
ENSTTRG00000001562	CMSS1	100	48.805	ENSHBUG00000008431	cmss1	100	50.345	Haplochromis_burtoni
ENSTTRG00000001562	CMSS1	91	84.190	ENSHGLG00000019481	CMSS1	100	84.190	Heterocephalus_glaber_female
ENSTTRG00000001562	CMSS1	92	84.047	ENSHGLG00100010314	CMSS1	100	84.047	Heterocephalus_glaber_male
ENSTTRG00000001562	CMSS1	100	52.349	ENSHCOG00000003222	cmss1	100	54.237	Hippocampus_comes
ENSTTRG00000001562	CMSS1	100	47.241	ENSIPUG00000011591	cmss1	100	47.766	Ictalurus_punctatus
ENSTTRG00000001562	CMSS1	100	87.455	ENSSTOG00000019366	CMSS1	100	87.455	Ictidomys_tridecemlineatus
ENSTTRG00000001562	CMSS1	100	81.720	ENSJJAG00000014894	Cmss1	100	81.720	Jaculus_jaculus
ENSTTRG00000001562	CMSS1	72	54.229	ENSKMAG00000002390	cmss1	81	54.229	Kryptolebias_marmoratus
ENSTTRG00000001562	CMSS1	79	51.681	ENSLBEG00000006298	cmss1	83	56.716	Labrus_bergylta
ENSTTRG00000001562	CMSS1	81	64.348	ENSLACG00000009293	CMSS1	100	64.348	Latimeria_chalumnae
ENSTTRG00000001562	CMSS1	100	51.237	ENSLOCG00000009391	cmss1	100	51.237	Lepisosteus_oculatus
ENSTTRG00000001562	CMSS1	81	87.719	ENSLAFG00000017509	CMSS1	100	87.719	Loxodonta_africana
ENSTTRG00000001562	CMSS1	100	87.455	ENSMFAG00000045006	CMSS1	100	87.455	Macaca_fascicularis
ENSTTRG00000001562	CMSS1	100	87.097	ENSMMUG00000002939	CMSS1	100	87.097	Macaca_mulatta
ENSTTRG00000001562	CMSS1	100	87.097	ENSMNEG00000031315	CMSS1	100	87.097	Macaca_nemestrina
ENSTTRG00000001562	CMSS1	100	87.097	ENSMLEG00000033660	CMSS1	100	87.097	Mandrillus_leucophaeus
ENSTTRG00000001562	CMSS1	100	52.069	ENSMAMG00000017176	cmss1	100	51.724	Mastacembelus_armatus
ENSTTRG00000001562	CMSS1	100	49.485	ENSMZEG00005021886	cmss1	100	50.515	Maylandia_zebra
ENSTTRG00000001562	CMSS1	81	65.789	ENSMGAG00000014360	CMSS1	100	65.789	Meleagris_gallopavo
ENSTTRG00000001562	CMSS1	100	60.650	ENSMAUG00000020609	Cmss1	100	60.650	Mesocricetus_auratus
ENSTTRG00000001562	CMSS1	100	87.814	ENSMICG00000048977	CMSS1	100	87.814	Microcebus_murinus
ENSTTRG00000001562	CMSS1	100	79.570	ENSMOCG00000021937	Cmss1	100	79.570	Microtus_ochrogaster
ENSTTRG00000001562	CMSS1	72	60.396	ENSMMOG00000019794	cmss1	84	60.396	Mola_mola
ENSTTRG00000001562	CMSS1	94	70.611	ENSMODG00000002275	CMSS1	98	70.611	Monodelphis_domestica
ENSTTRG00000001562	CMSS1	100	52.055	ENSMALG00000004250	cmss1	100	51.203	Monopterus_albus
ENSTTRG00000001562	CMSS1	100	79.643	MGP_CAROLIEiJ_G0020824	Cmss1	100	79.643	Mus_caroli
ENSTTRG00000001562	CMSS1	100	80.714	ENSMUSG00000022748	Cmss1	100	80.714	Mus_musculus
ENSTTRG00000001562	CMSS1	100	78.571	MGP_PahariEiJ_G0016524	Cmss1	100	78.571	Mus_pahari
ENSTTRG00000001562	CMSS1	100	80.000	MGP_SPRETEiJ_G0021724	Cmss1	100	80.000	Mus_spretus
ENSTTRG00000001562	CMSS1	92	91.440	ENSMPUG00000011324	CMSS1	99	90.734	Mustela_putorius_furo
ENSTTRG00000001562	CMSS1	92	88.846	ENSMLUG00000001131	CMSS1	99	88.846	Myotis_lucifugus
ENSTTRG00000001562	CMSS1	100	82.079	ENSNGAG00000020316	Cmss1	100	82.079	Nannospalax_galili
ENSTTRG00000001562	CMSS1	100	49.492	ENSNBRG00000003095	cmss1	100	50.515	Neolamprologus_brichardi
ENSTTRG00000001562	CMSS1	100	88.530	ENSNLEG00000034172	CMSS1	100	88.530	Nomascus_leucogenys
ENSTTRG00000001562	CMSS1	81	64.035	ENSMEUG00000014505	CMSS1	100	64.035	Notamacropus_eugenii
ENSTTRG00000001562	CMSS1	100	87.814	ENSOPRG00000002986	CMSS1	100	87.814	Ochotona_princeps
ENSTTRG00000001562	CMSS1	100	68.100	ENSODEG00000009446	-	100	68.100	Octodon_degus
ENSTTRG00000001562	CMSS1	100	79.359	ENSODEG00000003558	-	100	79.359	Octodon_degus
ENSTTRG00000001562	CMSS1	100	84.946	ENSODEG00000005226	-	100	84.946	Octodon_degus
ENSTTRG00000001562	CMSS1	100	75.725	ENSODEG00000001853	-	100	75.725	Octodon_degus
ENSTTRG00000001562	CMSS1	72	59.901	ENSONIG00000006678	cmss1	93	54.545	Oreochromis_niloticus
ENSTTRG00000001562	CMSS1	92	68.077	ENSOANG00000007529	CMSS1	100	72.103	Ornithorhynchus_anatinus
ENSTTRG00000001562	CMSS1	96	85.294	ENSOCUG00000025366	CMSS1	99	85.294	Oryctolagus_cuniculus
ENSTTRG00000001562	CMSS1	100	54.737	ENSORLG00000020340	cmss1	100	54.737	Oryzias_latipes
ENSTTRG00000001562	CMSS1	75	55.450	ENSORLG00020012235	cmss1	85	54.950	Oryzias_latipes_hni
ENSTTRG00000001562	CMSS1	72	54.455	ENSORLG00015015551	cmss1	75	54.455	Oryzias_latipes_hsok
ENSTTRG00000001562	CMSS1	100	52.069	ENSOMEG00000012555	cmss1	100	53.287	Oryzias_melastigma
ENSTTRG00000001562	CMSS1	81	89.474	ENSOGAG00000002045	CMSS1	100	89.474	Otolemur_garnettii
ENSTTRG00000001562	CMSS1	92	89.147	ENSOARG00000017899	CMSS1	89	89.147	Ovis_aries
ENSTTRG00000001562	CMSS1	92	87.597	ENSPPAG00000038515	CMSS1	95	87.597	Pan_paniscus
ENSTTRG00000001562	CMSS1	100	91.039	ENSPPRG00000016767	CMSS1	100	91.039	Panthera_pardus
ENSTTRG00000001562	CMSS1	100	90.323	ENSPTIG00000018274	CMSS1	100	90.323	Panthera_tigris_altaica
ENSTTRG00000001562	CMSS1	100	86.380	ENSPTRG00000015157	CMSS1	100	87.755	Pan_troglodytes
ENSTTRG00000001562	CMSS1	92	85.271	ENSPANG00000019980	CMSS1	99	85.271	Papio_anubis
ENSTTRG00000001562	CMSS1	91	56.154	ENSPKIG00000012609	cmss1	97	56.371	Paramormyrops_kingsleyae
ENSTTRG00000001562	CMSS1	82	68.559	ENSPSIG00000003849	CMSS1	100	68.559	Pelodiscus_sinensis
ENSTTRG00000001562	CMSS1	84	57.021	ENSPMGG00000010286	cmss1	99	57.021	Periophthalmus_magnuspinnatus
ENSTTRG00000001562	CMSS1	100	81.071	ENSPEMG00000016384	Cmss1	100	81.071	Peromyscus_maniculatus_bairdii
ENSTTRG00000001562	CMSS1	73	51.961	ENSPMAG00000001146	cmss1	99	52.475	Petromyzon_marinus
ENSTTRG00000001562	CMSS1	88	73.984	ENSPCIG00000015656	CMSS1	93	73.984	Phascolarctos_cinereus
ENSTTRG00000001562	CMSS1	100	51.034	ENSPFOG00000016849	cmss1	100	51.916	Poecilia_formosa
ENSTTRG00000001562	CMSS1	100	50.690	ENSPLAG00000008323	cmss1	100	51.568	Poecilia_latipinna
ENSTTRG00000001562	CMSS1	100	51.557	ENSPMEG00000021020	cmss1	100	52.249	Poecilia_mexicana
ENSTTRG00000001562	CMSS1	88	55.600	ENSPREG00000007618	cmss1	84	56.225	Poecilia_reticulata
ENSTTRG00000001562	CMSS1	100	87.455	ENSPPYG00000013606	CMSS1	100	87.455	Pongo_abelii
ENSTTRG00000001562	CMSS1	100	88.172	ENSPCOG00000020035	CMSS1	100	88.172	Propithecus_coquereli
ENSTTRG00000001562	CMSS1	100	75.986	ENSPVAG00000017031	CMSS1	100	75.986	Pteropus_vampyrus
ENSTTRG00000001562	CMSS1	91	49.811	ENSPNYG00000013428	cmss1	97	50.943	Pundamilia_nyererei
ENSTTRG00000001562	CMSS1	100	49.158	ENSPNAG00000007912	cmss1	100	49.832	Pygocentrus_nattereri
ENSTTRG00000001562	CMSS1	92	78.764	ENSRNOG00000027888	Cmss1	99	78.764	Rattus_norvegicus
ENSTTRG00000001562	CMSS1	100	86.738	ENSRBIG00000037931	CMSS1	100	86.738	Rhinopithecus_bieti
ENSTTRG00000001562	CMSS1	100	86.738	ENSRROG00000042910	CMSS1	100	86.738	Rhinopithecus_roxellana
ENSTTRG00000001562	CMSS1	100	82.143	ENSSBOG00000030980	CMSS1	99	87.645	Saimiri_boliviensis_boliviensis
ENSTTRG00000001562	CMSS1	88	72.000	ENSSHAG00000009321	CMSS1	99	72.000	Sarcophilus_harrisii
ENSTTRG00000001562	CMSS1	100	51.839	ENSSFOG00015001509	cmss1	100	53.448	Scleropages_formosus
ENSTTRG00000001562	CMSS1	100	54.266	ENSSMAG00000001653	cmss1	100	53.425	Scophthalmus_maximus
ENSTTRG00000001562	CMSS1	100	51.736	ENSSDUG00000007719	cmss1	100	53.265	Seriola_dumerili
ENSTTRG00000001562	CMSS1	74	62.802	ENSSLDG00000012300	cmss1	79	57.292	Seriola_lalandi_dorsalis
ENSTTRG00000001562	CMSS1	100	72.143	ENSSARG00000003584	CMSS1	100	72.143	Sorex_araneus
ENSTTRG00000001562	CMSS1	81	66.372	ENSSPUG00000003865	CMSS1	100	66.372	Sphenodon_punctatus
ENSTTRG00000001562	CMSS1	93	53.333	ENSSPAG00000019182	cmss1	82	53.333	Stegastes_partitus
ENSTTRG00000001562	CMSS1	100	90.323	ENSSSCG00000011970	CMSS1	100	90.323	Sus_scrofa
ENSTTRG00000001562	CMSS1	82	62.882	ENSTGUG00000013635	CMSS1	100	62.882	Taeniopygia_guttata
ENSTTRG00000001562	CMSS1	100	51.408	ENSTRUG00000015265	cmss1	100	51.056	Takifugu_rubripes
ENSTTRG00000001562	CMSS1	72	53.960	ENSTNIG00000002880	cmss1	97	44.643	Tetraodon_nigroviridis
ENSTTRG00000001562	CMSS1	100	58.929	ENSTBEG00000016722	CMSS1	100	58.929	Tupaia_belangeri
ENSTTRG00000001562	CMSS1	97	86.496	ENSUAMG00000024209	CMSS1	100	91.480	Ursus_americanus
ENSTTRG00000001562	CMSS1	93	89.575	ENSUMAG00000001983	CMSS1	99	89.147	Ursus_maritimus
ENSTTRG00000001562	CMSS1	100	69.176	ENSVPAG00000000263	CMSS1	100	69.176	Vicugna_pacos
ENSTTRG00000001562	CMSS1	88	89.431	ENSVVUG00000021647	-	100	89.431	Vulpes_vulpes
ENSTTRG00000001562	CMSS1	77	89.862	ENSVVUG00000007776	-	85	89.862	Vulpes_vulpes
ENSTTRG00000001562	CMSS1	100	55.282	ENSXETG00000011858	cmss1	100	55.282	Xenopus_tropicalis
ENSTTRG00000001562	CMSS1	74	61.058	ENSXCOG00000018724	cmss1	69	60.891	Xiphophorus_couchianus
ENSTTRG00000001562	CMSS1	74	61.058	ENSXMAG00000011243	cmss1	76	60.891	Xiphophorus_maculatus