EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTTRG00000003007 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Plus strand
Length: 14011 bases
Position: chrGeneScaffold_3277:443412-457422
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000002821	zf-CCCH	PF00642.24	2e-20	1	2
ENSTTRP00000002821	zf-CCCH	PF00642.24	2e-20	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000003006	CPSF4-201	810	-	ENSTTRP00000002821	269 (aa)	-	UPI00018B7E2B

Gene Model

Click here to download ENSTTRG00000003007's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000003007's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000003007	CPSF4	100	78.810	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSTTRG00000003007	CPSF4	67	57.459	ENSAPOG00000004921	cpsf4	100	57.459	Acanthochromis_polyacanthus
ENSTTRG00000003007	CPSF4	100	78.439	ENSAMEG00000006252	CPSF4	100	78.439	Ailuropoda_melanoleuca
ENSTTRG00000003007	CPSF4	76	95.455	ENSACIG00000009248	cpsf4	100	73.606	Amphilophus_citrinellus
ENSTTRG00000003007	CPSF4	100	73.234	ENSAOCG00000019616	cpsf4	100	73.234	Amphiprion_ocellaris
ENSTTRG00000003007	CPSF4	100	73.234	ENSAPEG00000011679	cpsf4	100	73.234	Amphiprion_percula
ENSTTRG00000003007	CPSF4	100	73.234	ENSATEG00000007010	cpsf4	81	95.455	Anabas_testudineus
ENSTTRG00000003007	CPSF4	100	74.721	ENSACAG00000012941	CPSF4	89	74.721	Anolis_carolinensis
ENSTTRG00000003007	CPSF4	100	78.810	ENSANAG00000021360	CPSF4	100	78.810	Aotus_nancymaae
ENSTTRG00000003007	CPSF4	79	95.455	ENSACLG00000010374	cpsf4	88	95.455	Astatotilapia_calliptera
ENSTTRG00000003007	CPSF4	76	95.604	ENSAMXG00000031647	cpsf4	83	95.455	Astyanax_mexicanus
ENSTTRG00000003007	CPSF4	100	78.439	ENSBTAG00000002090	CPSF4	100	78.439	Bos_taurus
ENSTTRG00000003007	CPSF4	100	78.810	ENSCJAG00000015826	CPSF4	100	78.810	Callithrix_jacchus
ENSTTRG00000003007	CPSF4	100	78.067	ENSCAFG00000015036	CPSF4	100	88.304	Canis_familiaris
ENSTTRG00000003007	CPSF4	74	100.000	ENSCAFG00020014462	CPSF4	100	71.747	Canis_lupus_dingo
ENSTTRG00000003007	CPSF4	100	78.439	ENSCHIG00000014313	CPSF4	100	78.439	Capra_hircus
ENSTTRG00000003007	CPSF4	63	91.892	ENSTSYG00000008195	-	79	91.083	Carlito_syrichta
ENSTTRG00000003007	CPSF4	74	95.455	ENSTSYG00000014604	-	81	95.455	Carlito_syrichta
ENSTTRG00000003007	CPSF4	100	78.067	ENSTSYG00000005712	-	100	78.067	Carlito_syrichta
ENSTTRG00000003007	CPSF4	55	100.000	ENSCAPG00000013881	CPSF4	87	73.394	Cavia_aperea
ENSTTRG00000003007	CPSF4	100	78.439	ENSCPOG00000001783	CPSF4	100	78.439	Cavia_porcellus
ENSTTRG00000003007	CPSF4	100	78.810	ENSCCAG00000028291	CPSF4	100	78.810	Cebus_capucinus
ENSTTRG00000003007	CPSF4	100	78.810	ENSCATG00000038440	CPSF4	86	100.000	Cercocebus_atys
ENSTTRG00000003007	CPSF4	100	78.439	ENSCLAG00000007050	CPSF4	100	78.439	Chinchilla_lanigera
ENSTTRG00000003007	CPSF4	100	78.810	ENSCSAG00000017795	CPSF4	100	78.810	Chlorocebus_sabaeus
ENSTTRG00000003007	CPSF4	80	71.759	ENSCPBG00000020869	CPSF4	100	71.759	Chrysemys_picta_bellii
ENSTTRG00000003007	CPSF4	62	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSTTRG00000003007	CPSF4	65	71.264	ENSCING00000021080	-	68	70.056	Ciona_intestinalis
ENSTTRG00000003007	CPSF4	66	71.910	ENSCSAVG00000011469	-	60	72.254	Ciona_savignyi
ENSTTRG00000003007	CPSF4	100	78.810	ENSCANG00000019384	CPSF4	85	100.000	Colobus_angolensis_palliatus
ENSTTRG00000003007	CPSF4	100	78.439	ENSCGRG00001024184	Cpsf4	100	78.439	Cricetulus_griseus_chok1gshd
ENSTTRG00000003007	CPSF4	100	78.439	ENSCGRG00000013892	Cpsf4	100	78.439	Cricetulus_griseus_crigri
ENSTTRG00000003007	CPSF4	79	95.455	ENSCSEG00000019055	cpsf4	79	95.455	Cynoglossus_semilaevis
ENSTTRG00000003007	CPSF4	100	72.119	ENSCVAG00000016528	cpsf4	100	72.119	Cyprinodon_variegatus
ENSTTRG00000003007	CPSF4	76	95.455	ENSDARG00000020217	cpsf4	100	73.063	Danio_rerio
ENSTTRG00000003007	CPSF4	100	78.439	ENSDNOG00000006344	CPSF4	100	78.439	Dasypus_novemcinctus
ENSTTRG00000003007	CPSF4	81	72.811	ENSDORG00000000742	Cpsf4	100	72.811	Dipodomys_ordii
ENSTTRG00000003007	CPSF4	64	70.115	FBgn0015621	Clp	59	70.115	Drosophila_melanogaster
ENSTTRG00000003007	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSTTRG00000003007	CPSF4	67	81.111	ENSEBUG00000012552	cpsf4	73	81.921	Eptatretus_burgeri
ENSTTRG00000003007	CPSF4	100	78.439	ENSEASG00005002487	CPSF4	100	78.439	Equus_asinus_asinus
ENSTTRG00000003007	CPSF4	100	78.439	ENSECAG00000007525	CPSF4	100	78.439	Equus_caballus
ENSTTRG00000003007	CPSF4	63	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSTTRG00000003007	CPSF4	100	72.426	ENSELUG00000011481	cpsf4	73	95.455	Esox_lucius
ENSTTRG00000003007	CPSF4	100	78.439	ENSFCAG00000015070	CPSF4	100	78.439	Felis_catus
ENSTTRG00000003007	CPSF4	100	75.836	ENSFALG00000013799	CPSF4	82	100.000	Ficedula_albicollis
ENSTTRG00000003007	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSTTRG00000003007	CPSF4	90	75.309	ENSFDAG00000014092	CPSF4	100	75.309	Fukomys_damarensis
ENSTTRG00000003007	CPSF4	100	72.491	ENSFHEG00000010880	cpsf4	100	69.517	Fundulus_heteroclitus
ENSTTRG00000003007	CPSF4	77	95.455	ENSGMOG00000002330	cpsf4	78	95.455	Gadus_morhua
ENSTTRG00000003007	CPSF4	100	75.836	ENSGALG00000004714	CPSF4	100	75.836	Gallus_gallus
ENSTTRG00000003007	CPSF4	66	51.064	ENSGALG00000004441	-	55	51.064	Gallus_gallus
ENSTTRG00000003007	CPSF4	100	71.747	ENSGAFG00000010580	cpsf4	100	71.747	Gambusia_affinis
ENSTTRG00000003007	CPSF4	100	68.266	ENSGACG00000007792	cpsf4	79	95.455	Gasterosteus_aculeatus
ENSTTRG00000003007	CPSF4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSTTRG00000003007	CPSF4	100	76.580	ENSGAGG00000021835	CPSF4	100	76.580	Gopherus_agassizii
ENSTTRG00000003007	CPSF4	100	78.810	ENSGGOG00000015131	CPSF4	100	78.810	Gorilla_gorilla
ENSTTRG00000003007	CPSF4	100	72.862	ENSHBUG00000013699	cpsf4	100	72.862	Haplochromis_burtoni
ENSTTRG00000003007	CPSF4	100	77.860	ENSHGLG00000017150	CPSF4	100	77.860	Heterocephalus_glaber_female
ENSTTRG00000003007	CPSF4	61	100.000	ENSHGLG00100009215	-	100	72.881	Heterocephalus_glaber_male
ENSTTRG00000003007	CPSF4	66	70.056	ENSHGLG00100017302	-	81	70.056	Heterocephalus_glaber_male
ENSTTRG00000003007	CPSF4	100	71.747	ENSHCOG00000004397	cpsf4	100	71.747	Hippocampus_comes
ENSTTRG00000003007	CPSF4	76	95.455	ENSIPUG00000017147	cpsf4	100	72.694	Ictalurus_punctatus
ENSTTRG00000003007	CPSF4	100	78.439	ENSSTOG00000001688	CPSF4	100	78.439	Ictidomys_tridecemlineatus
ENSTTRG00000003007	CPSF4	100	78.439	ENSJJAG00000019426	Cpsf4	100	78.439	Jaculus_jaculus
ENSTTRG00000003007	CPSF4	100	70.632	ENSKMAG00000015642	cpsf4	100	68.030	Kryptolebias_marmoratus
ENSTTRG00000003007	CPSF4	64	77.907	ENSLACG00000018470	-	70	77.907	Latimeria_chalumnae
ENSTTRG00000003007	CPSF4	100	74.444	ENSLACG00000010938	CPSF4	100	74.444	Latimeria_chalumnae
ENSTTRG00000003007	CPSF4	100	74.349	ENSLOCG00000004814	cpsf4	100	74.349	Lepisosteus_oculatus
ENSTTRG00000003007	CPSF4	100	78.067	ENSLAFG00000000159	CPSF4	100	78.067	Loxodonta_africana
ENSTTRG00000003007	CPSF4	100	78.810	ENSMFAG00000001462	CPSF4	85	100.000	Macaca_fascicularis
ENSTTRG00000003007	CPSF4	100	78.810	ENSMMUG00000019191	CPSF4	100	78.810	Macaca_mulatta
ENSTTRG00000003007	CPSF4	100	78.810	ENSMNEG00000032306	CPSF4	85	100.000	Macaca_nemestrina
ENSTTRG00000003007	CPSF4	100	78.810	ENSMLEG00000034721	CPSF4	86	100.000	Mandrillus_leucophaeus
ENSTTRG00000003007	CPSF4	100	73.234	ENSMAMG00000006244	cpsf4	100	73.234	Mastacembelus_armatus
ENSTTRG00000003007	CPSF4	100	72.862	ENSMZEG00005007515	cpsf4	100	72.862	Maylandia_zebra
ENSTTRG00000003007	CPSF4	87	72.766	ENSMGAG00000004235	CPSF4	100	72.766	Meleagris_gallopavo
ENSTTRG00000003007	CPSF4	100	78.439	ENSMAUG00000021253	Cpsf4	100	78.439	Mesocricetus_auratus
ENSTTRG00000003007	CPSF4	100	78.810	ENSMICG00000017429	CPSF4	85	100.000	Microcebus_murinus
ENSTTRG00000003007	CPSF4	100	78.439	ENSMOCG00000014901	Cpsf4	100	78.439	Microtus_ochrogaster
ENSTTRG00000003007	CPSF4	79	95.455	ENSMMOG00000001813	cpsf4	95	87.349	Mola_mola
ENSTTRG00000003007	CPSF4	100	78.067	ENSMODG00000001367	CPSF4	100	78.067	Monodelphis_domestica
ENSTTRG00000003007	CPSF4	100	72.491	ENSMALG00000012611	cpsf4	75	95.455	Monopterus_albus
ENSTTRG00000003007	CPSF4	100	78.439	MGP_CAROLIEiJ_G0028012	Cpsf4	100	78.439	Mus_caroli
ENSTTRG00000003007	CPSF4	100	78.439	ENSMUSG00000029625	Cpsf4	100	78.439	Mus_musculus
ENSTTRG00000003007	CPSF4	100	78.439	MGP_PahariEiJ_G0024581	Cpsf4	100	78.439	Mus_pahari
ENSTTRG00000003007	CPSF4	100	78.810	MGP_SPRETEiJ_G0029013	Cpsf4	100	78.810	Mus_spretus
ENSTTRG00000003007	CPSF4	100	78.439	ENSMPUG00000016508	CPSF4	100	78.439	Mustela_putorius_furo
ENSTTRG00000003007	CPSF4	87	74.894	ENSMLUG00000010980	CPSF4	100	74.894	Myotis_lucifugus
ENSTTRG00000003007	CPSF4	100	78.439	ENSNGAG00000001567	Cpsf4	100	78.439	Nannospalax_galili
ENSTTRG00000003007	CPSF4	91	71.429	ENSNBRG00000003943	cpsf4	98	71.429	Neolamprologus_brichardi
ENSTTRG00000003007	CPSF4	100	78.810	ENSNLEG00000011074	CPSF4	100	78.810	Nomascus_leucogenys
ENSTTRG00000003007	CPSF4	100	78.067	ENSMEUG00000006955	CPSF4	100	78.067	Notamacropus_eugenii
ENSTTRG00000003007	CPSF4	100	78.067	ENSOPRG00000013663	CPSF4	100	78.067	Ochotona_princeps
ENSTTRG00000003007	CPSF4	100	62.637	ENSODEG00000009779	-	79	90.909	Octodon_degus
ENSTTRG00000003007	CPSF4	100	78.439	ENSODEG00000011181	-	100	78.439	Octodon_degus
ENSTTRG00000003007	CPSF4	66	83.616	ENSODEG00000018283	-	65	83.616	Octodon_degus
ENSTTRG00000003007	CPSF4	100	72.862	ENSONIG00000008495	cpsf4	100	72.862	Oreochromis_niloticus
ENSTTRG00000003007	CPSF4	87	74.043	ENSOANG00000007729	CPSF4	100	74.043	Ornithorhynchus_anatinus
ENSTTRG00000003007	CPSF4	70	65.445	ENSOANG00000009568	-	63	67.978	Ornithorhynchus_anatinus
ENSTTRG00000003007	CPSF4	100	78.439	ENSOCUG00000002437	CPSF4	70	78.439	Oryctolagus_cuniculus
ENSTTRG00000003007	CPSF4	100	72.862	ENSORLG00000022798	cpsf4	100	72.862	Oryzias_latipes
ENSTTRG00000003007	CPSF4	100	72.862	ENSORLG00020008548	cpsf4	100	72.862	Oryzias_latipes_hni
ENSTTRG00000003007	CPSF4	100	72.491	ENSORLG00015019575	cpsf4	100	72.491	Oryzias_latipes_hsok
ENSTTRG00000003007	CPSF4	100	71.747	ENSOMEG00000005176	cpsf4	80	95.455	Oryzias_melastigma
ENSTTRG00000003007	CPSF4	100	78.810	ENSOGAG00000010884	CPSF4	100	78.810	Otolemur_garnettii
ENSTTRG00000003007	CPSF4	100	67.766	ENSOARG00000018668	CPSF4	100	67.033	Ovis_aries
ENSTTRG00000003007	CPSF4	100	78.810	ENSPPAG00000043355	CPSF4	85	100.000	Pan_paniscus
ENSTTRG00000003007	CPSF4	100	78.439	ENSPPRG00000003134	CPSF4	100	78.439	Panthera_pardus
ENSTTRG00000003007	CPSF4	90	76.033	ENSPTIG00000005604	CPSF4	90	76.033	Panthera_tigris_altaica
ENSTTRG00000003007	CPSF4	100	78.810	ENSPTRG00000019453	CPSF4	85	100.000	Pan_troglodytes
ENSTTRG00000003007	CPSF4	100	78.810	ENSPANG00000023123	CPSF4	85	100.000	Papio_anubis
ENSTTRG00000003007	CPSF4	100	71.898	ENSPKIG00000014278	cpsf4	100	71.898	Paramormyrops_kingsleyae
ENSTTRG00000003007	CPSF4	52	74.286	ENSPSIG00000018198	-	64	81.148	Pelodiscus_sinensis
ENSTTRG00000003007	CPSF4	80	71.296	ENSPSIG00000011229	CPSF4	100	71.296	Pelodiscus_sinensis
ENSTTRG00000003007	CPSF4	68	86.413	ENSPMGG00000017735	cpsf4	83	95.455	Periophthalmus_magnuspinnatus
ENSTTRG00000003007	CPSF4	100	78.439	ENSPEMG00000004508	Cpsf4	100	78.439	Peromyscus_maniculatus_bairdii
ENSTTRG00000003007	CPSF4	100	78.067	ENSPCIG00000024776	CPSF4	100	78.067	Phascolarctos_cinereus
ENSTTRG00000003007	CPSF4	100	71.747	ENSPFOG00000014912	cpsf4	100	71.747	Poecilia_formosa
ENSTTRG00000003007	CPSF4	75	90.909	ENSPLAG00000009599	cpsf4	81	90.909	Poecilia_latipinna
ENSTTRG00000003007	CPSF4	100	71.747	ENSPMEG00000009790	cpsf4	100	71.747	Poecilia_mexicana
ENSTTRG00000003007	CPSF4	100	71.004	ENSPREG00000018166	cpsf4	75	92.529	Poecilia_reticulata
ENSTTRG00000003007	CPSF4	87	75.214	ENSPPYG00000017378	CPSF4	100	75.214	Pongo_abelii
ENSTTRG00000003007	CPSF4	100	77.323	ENSPCAG00000001892	CPSF4	100	77.323	Procavia_capensis
ENSTTRG00000003007	CPSF4	100	78.439	ENSPCOG00000012771	CPSF4	100	78.439	Propithecus_coquereli
ENSTTRG00000003007	CPSF4	100	71.747	ENSPVAG00000007531	CPSF4	100	71.747	Pteropus_vampyrus
ENSTTRG00000003007	CPSF4	100	72.862	ENSPNYG00000018559	cpsf4	100	72.862	Pundamilia_nyererei
ENSTTRG00000003007	CPSF4	76	96.154	ENSPNAG00000003736	cpsf4	100	74.074	Pygocentrus_nattereri
ENSTTRG00000003007	CPSF4	100	78.439	ENSRNOG00000000985	Cpsf4	100	78.439	Rattus_norvegicus
ENSTTRG00000003007	CPSF4	87	75.641	ENSRBIG00000033886	CPSF4	100	75.641	Rhinopithecus_bieti
ENSTTRG00000003007	CPSF4	100	78.810	ENSRROG00000040431	CPSF4	100	78.810	Rhinopithecus_roxellana
ENSTTRG00000003007	CPSF4	100	78.810	ENSSBOG00000020493	CPSF4	100	78.810	Saimiri_boliviensis_boliviensis
ENSTTRG00000003007	CPSF4	100	78.067	ENSSHAG00000011533	CPSF4	100	78.067	Sarcophilus_harrisii
ENSTTRG00000003007	CPSF4	100	72.101	ENSSFOG00015007883	cpsf4	100	72.101	Scleropages_formosus
ENSTTRG00000003007	CPSF4	79	95.455	ENSSMAG00000006374	cpsf4	82	95.455	Scophthalmus_maximus
ENSTTRG00000003007	CPSF4	100	72.862	ENSSDUG00000018887	cpsf4	100	72.862	Seriola_dumerili
ENSTTRG00000003007	CPSF4	100	72.862	ENSSLDG00000019078	cpsf4	100	72.862	Seriola_lalandi_dorsalis
ENSTTRG00000003007	CPSF4	87	75.641	ENSSARG00000012416	CPSF4	100	75.641	Sorex_araneus
ENSTTRG00000003007	CPSF4	65	77.841	ENSSPUG00000014803	-	78	77.841	Sphenodon_punctatus
ENSTTRG00000003007	CPSF4	100	75.093	ENSSPUG00000003549	CPSF4	100	75.093	Sphenodon_punctatus
ENSTTRG00000003007	CPSF4	100	72.862	ENSSPAG00000006174	cpsf4	83	95.455	Stegastes_partitus
ENSTTRG00000003007	CPSF4	100	78.810	ENSSSCG00000026896	CPSF4	100	78.810	Sus_scrofa
ENSTTRG00000003007	CPSF4	100	74.908	ENSTGUG00000007552	CPSF4	82	100.000	Taeniopygia_guttata
ENSTTRG00000003007	CPSF4	100	71.004	ENSTRUG00000024220	cpsf4	100	71.004	Takifugu_rubripes
ENSTTRG00000003007	CPSF4	100	71.375	ENSTNIG00000006265	cpsf4	100	71.375	Tetraodon_nigroviridis
ENSTTRG00000003007	CPSF4	87	66.239	ENSTBEG00000011406	CPSF4	100	66.239	Tupaia_belangeri
ENSTTRG00000003007	CPSF4	71	99.474	ENSUAMG00000008051	CPSF4	73	99.474	Ursus_americanus
ENSTTRG00000003007	CPSF4	100	78.439	ENSUMAG00000009474	CPSF4	100	78.439	Ursus_maritimus
ENSTTRG00000003007	CPSF4	100	78.067	ENSVVUG00000008824	CPSF4	100	78.067	Vulpes_vulpes
ENSTTRG00000003007	CPSF4	100	72.401	ENSXETG00000009892	cpsf4	100	72.401	Xenopus_tropicalis
ENSTTRG00000003007	CPSF4	99	55.263	ENSXETG00000004641	cpsf4l	99	55.263	Xenopus_tropicalis
ENSTTRG00000003007	CPSF4	100	71.375	ENSXCOG00000016040	cpsf4	100	71.375	Xiphophorus_couchianus
ENSTTRG00000003007	CPSF4	100	71.747	ENSXMAG00000024670	cpsf4	100	71.747	Xiphophorus_maculatus