EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTTRG00000003343 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Minus strand
Length: 60384 bases
Position: chrGeneScaffold_3268:85636-146019
Accession: 101335572
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000003131	RRM_1	PF00076.22	1.7e-32	1	2
ENSTTRP00000003131	RRM_1	PF00076.22	1.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000003339	-	1560	-	ENSTTRP00000003131	519 (aa)	XP_004318683	A0A2U3V3G0

Gene Model

Click here to download ENSTTRG00000003343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000003343's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTTRG00000003343	PSPC1	89	60.173	ENSTTRG00000009605	NONO	81	67.454

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000003343	PSPC1	100	96.750	ENSG00000121390	PSPC1	100	96.750	Homo_sapiens
ENSTTRG00000003343	PSPC1	91	69.815	ENSAPOG00000015946	pspc1	88	68.763	Acanthochromis_polyacanthus
ENSTTRG00000003343	PSPC1	100	97.505	ENSAMEG00000017420	PSPC1	100	97.505	Ailuropoda_melanoleuca
ENSTTRG00000003343	PSPC1	99	57.728	ENSACIG00000018695	pspc1	100	55.493	Amphilophus_citrinellus
ENSTTRG00000003343	PSPC1	90	69.485	ENSAOCG00000005279	pspc1	85	69.869	Amphiprion_ocellaris
ENSTTRG00000003343	PSPC1	90	70.588	ENSAPEG00000015927	pspc1	85	69.869	Amphiprion_percula
ENSTTRG00000003343	PSPC1	90	58.491	ENSATEG00000004878	pspc1	86	59.529	Anabas_testudineus
ENSTTRG00000003343	PSPC1	89	60.730	ENSAPLG00000003643	SFPQ	69	68.852	Anas_platyrhynchos
ENSTTRG00000003343	PSPC1	78	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSTTRG00000003343	PSPC1	89	91.416	ENSACAG00000002093	PSPC1	99	84.952	Anolis_carolinensis
ENSTTRG00000003343	PSPC1	90	52.708	ENSACAG00000013307	-	56	65.193	Anolis_carolinensis
ENSTTRG00000003343	PSPC1	100	97.318	ENSANAG00000000059	PSPC1	100	97.318	Aotus_nancymaae
ENSTTRG00000003343	PSPC1	99	57.491	ENSACLG00000027220	pspc1	100	54.784	Astatotilapia_calliptera
ENSTTRG00000003343	PSPC1	89	69.182	ENSAMXG00000036881	pspc1	92	67.066	Astyanax_mexicanus
ENSTTRG00000003343	PSPC1	100	98.269	ENSBTAG00000003934	PSPC1	100	98.269	Bos_taurus
ENSTTRG00000003343	PSPC1	100	97.318	ENSCJAG00000004554	PSPC1	100	97.318	Callithrix_jacchus
ENSTTRG00000003343	PSPC1	100	97.313	ENSCAFG00020002009	PSPC1	100	97.313	Canis_lupus_dingo
ENSTTRG00000003343	PSPC1	100	98.269	ENSCHIG00000016708	PSPC1	100	98.269	Capra_hircus
ENSTTRG00000003343	PSPC1	77	92.040	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSTTRG00000003343	PSPC1	100	97.121	ENSCPOG00000000395	PSPC1	100	97.121	Cavia_porcellus
ENSTTRG00000003343	PSPC1	100	97.318	ENSCCAG00000033498	PSPC1	100	97.318	Cebus_capucinus
ENSTTRG00000003343	PSPC1	100	96.558	ENSCATG00000036434	PSPC1	100	96.558	Cercocebus_atys
ENSTTRG00000003343	PSPC1	89	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSTTRG00000003343	PSPC1	100	89.866	ENSCHOG00000008913	PSPC1	100	90.057	Choloepus_hoffmanni
ENSTTRG00000003343	PSPC1	99	87.238	ENSCPBG00000020859	PSPC1	99	87.238	Chrysemys_picta_bellii
ENSTTRG00000003343	PSPC1	59	58.442	ENSCSAVG00000003533	-	53	61.429	Ciona_savignyi
ENSTTRG00000003343	PSPC1	78	85.679	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSTTRG00000003343	PSPC1	100	95.785	ENSCGRG00001018368	Pspc1	100	95.785	Cricetulus_griseus_chok1gshd
ENSTTRG00000003343	PSPC1	100	95.785	ENSCGRG00000011724	Pspc1	100	95.785	Cricetulus_griseus_crigri
ENSTTRG00000003343	PSPC1	88	66.307	ENSCVAG00000007679	-	92	62.118	Cyprinodon_variegatus
ENSTTRG00000003343	PSPC1	99	66.541	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSTTRG00000003343	PSPC1	100	95.793	ENSDNOG00000011078	PSPC1	100	95.793	Dasypus_novemcinctus
ENSTTRG00000003343	PSPC1	100	93.702	ENSDORG00000016050	Pspc1	100	93.702	Dipodomys_ordii
ENSTTRG00000003343	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSTTRG00000003343	PSPC1	64	44.568	ENSEBUG00000010133	pspc1	84	46.646	Eptatretus_burgeri
ENSTTRG00000003343	PSPC1	88	59.298	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSTTRG00000003343	PSPC1	100	97.308	ENSEASG00005000119	PSPC1	100	97.308	Equus_asinus_asinus
ENSTTRG00000003343	PSPC1	100	97.308	ENSECAG00000017286	PSPC1	100	97.308	Equus_caballus
ENSTTRG00000003343	PSPC1	88	84.639	ENSEEUG00000011288	-	88	84.277	Erinaceus_europaeus
ENSTTRG00000003343	PSPC1	99	65.996	ENSELUG00000003746	pspc1	94	72.405	Esox_lucius
ENSTTRG00000003343	PSPC1	100	97.697	ENSFCAG00000027841	PSPC1	100	97.697	Felis_catus
ENSTTRG00000003343	PSPC1	90	94.635	ENSFALG00000008750	PSPC1	99	87.500	Ficedula_albicollis
ENSTTRG00000003343	PSPC1	100	95.568	ENSFDAG00000002617	PSPC1	100	95.568	Fukomys_damarensis
ENSTTRG00000003343	PSPC1	89	66.452	ENSGMOG00000015074	pspc1	91	63.469	Gadus_morhua
ENSTTRG00000003343	PSPC1	99	87.500	ENSGALG00000017142	PSPC1	99	87.879	Gallus_gallus
ENSTTRG00000003343	PSPC1	73	68.622	ENSGAFG00000006327	pspc1	81	68.622	Gambusia_affinis
ENSTTRG00000003343	PSPC1	89	65.733	ENSGACG00000014901	pspc1	98	70.201	Gasterosteus_aculeatus
ENSTTRG00000003343	PSPC1	89	60.086	ENSGAGG00000017325	-	56	68.033	Gopherus_agassizii
ENSTTRG00000003343	PSPC1	99	87.048	ENSGAGG00000019164	PSPC1	99	87.048	Gopherus_agassizii
ENSTTRG00000003343	PSPC1	100	96.558	ENSGGOG00000003414	PSPC1	100	96.558	Gorilla_gorilla
ENSTTRG00000003343	PSPC1	99	64.850	ENSHBUG00000001139	pspc1	100	64.474	Haplochromis_burtoni
ENSTTRG00000003343	PSPC1	100	96.737	ENSHGLG00000018811	PSPC1	100	96.737	Heterocephalus_glaber_female
ENSTTRG00000003343	PSPC1	67	93.064	ENSHGLG00100007962	PSPC1	100	93.064	Heterocephalus_glaber_male
ENSTTRG00000003343	PSPC1	77	67.554	ENSHCOG00000013251	pspc1	93	65.714	Hippocampus_comes
ENSTTRG00000003343	PSPC1	99	67.790	ENSIPUG00000013192	pspc1	100	67.603	Ictalurus_punctatus
ENSTTRG00000003343	PSPC1	100	96.565	ENSSTOG00000026833	PSPC1	100	96.565	Ictidomys_tridecemlineatus
ENSTTRG00000003343	PSPC1	100	95.594	ENSJJAG00000018334	Pspc1	100	95.594	Jaculus_jaculus
ENSTTRG00000003343	PSPC1	89	55.508	ENSKMAG00000013525	-	96	52.039	Kryptolebias_marmoratus
ENSTTRG00000003343	PSPC1	91	66.667	ENSLBEG00000004474	pspc1	79	70.481	Labrus_bergylta
ENSTTRG00000003343	PSPC1	99	77.820	ENSLACG00000010762	PSPC1	99	78.409	Latimeria_chalumnae
ENSTTRG00000003343	PSPC1	99	77.500	ENSLOCG00000010832	pspc1	99	77.885	Lepisosteus_oculatus
ENSTTRG00000003343	PSPC1	100	95.019	ENSLAFG00000010968	PSPC1	100	95.785	Loxodonta_africana
ENSTTRG00000003343	PSPC1	100	96.750	ENSMFAG00000032728	PSPC1	100	96.750	Macaca_fascicularis
ENSTTRG00000003343	PSPC1	100	96.750	ENSMMUG00000020262	PSPC1	100	96.750	Macaca_mulatta
ENSTTRG00000003343	PSPC1	100	96.750	ENSMNEG00000027401	PSPC1	100	96.750	Macaca_nemestrina
ENSTTRG00000003343	PSPC1	100	99.248	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSTTRG00000003343	PSPC1	89	67.423	ENSMAMG00000004333	pspc1	86	67.789	Mastacembelus_armatus
ENSTTRG00000003343	PSPC1	99	57.491	ENSMZEG00005005726	pspc1	100	54.784	Maylandia_zebra
ENSTTRG00000003343	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSTTRG00000003343	PSPC1	88	90.239	ENSMAUG00000021067	Pspc1	99	90.239	Mesocricetus_auratus
ENSTTRG00000003343	PSPC1	100	96.935	ENSMICG00000013970	PSPC1	100	96.935	Microcebus_murinus
ENSTTRG00000003343	PSPC1	100	95.977	ENSMOCG00000006060	Pspc1	100	95.977	Microtus_ochrogaster
ENSTTRG00000003343	PSPC1	93	43.048	ENSMMOG00000004352	pspc1	61	51.445	Mola_mola
ENSTTRG00000003343	PSPC1	95	91.767	ENSMODG00000008029	PSPC1	78	94.845	Monodelphis_domestica
ENSTTRG00000003343	PSPC1	89	69.528	ENSMALG00000008914	pspc1	81	70.766	Monopterus_albus
ENSTTRG00000003343	PSPC1	100	95.602	MGP_CAROLIEiJ_G0019341	Pspc1	100	95.602	Mus_caroli
ENSTTRG00000003343	PSPC1	100	95.793	ENSMUSG00000021938	Pspc1	100	95.793	Mus_musculus
ENSTTRG00000003343	PSPC1	100	95.602	MGP_PahariEiJ_G0030359	Pspc1	100	95.602	Mus_pahari
ENSTTRG00000003343	PSPC1	100	95.793	MGP_SPRETEiJ_G0020232	Pspc1	100	95.793	Mus_spretus
ENSTTRG00000003343	PSPC1	100	97.318	ENSMPUG00000013347	PSPC1	100	97.318	Mustela_putorius_furo
ENSTTRG00000003343	PSPC1	100	96.565	ENSMLUG00000017663	PSPC1	100	96.565	Myotis_lucifugus
ENSTTRG00000003343	PSPC1	100	95.977	ENSNGAG00000011271	Pspc1	100	95.977	Nannospalax_galili
ENSTTRG00000003343	PSPC1	73	65.051	ENSNBRG00000014059	pspc1	92	62.121	Neolamprologus_brichardi
ENSTTRG00000003343	PSPC1	100	96.947	ENSNLEG00000001294	PSPC1	100	96.947	Nomascus_leucogenys
ENSTTRG00000003343	PSPC1	84	90.625	ENSMEUG00000000476	PSPC1	84	92.578	Notamacropus_eugenii
ENSTTRG00000003343	PSPC1	100	85.000	ENSODEG00000007817	-	100	81.973	Octodon_degus
ENSTTRG00000003343	PSPC1	100	84.645	ENSODEG00000019012	-	100	86.338	Octodon_degus
ENSTTRG00000003343	PSPC1	99	64.850	ENSONIG00000012010	pspc1	99	63.755	Oreochromis_niloticus
ENSTTRG00000003343	PSPC1	77	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSTTRG00000003343	PSPC1	99	66.346	ENSOANG00000011381	-	99	64.423	Ornithorhynchus_anatinus
ENSTTRG00000003343	PSPC1	100	96.947	ENSOCUG00000006153	PSPC1	100	96.947	Oryctolagus_cuniculus
ENSTTRG00000003343	PSPC1	89	70.000	ENSORLG00000004232	-	91	63.221	Oryzias_latipes
ENSTTRG00000003343	PSPC1	89	69.574	ENSORLG00020000578	PSPC1	91	64.386	Oryzias_latipes_hni
ENSTTRG00000003343	PSPC1	89	70.426	ENSORLG00015017480	pspc1	86	67.396	Oryzias_latipes_hsok
ENSTTRG00000003343	PSPC1	100	97.132	ENSOGAG00000012643	PSPC1	100	97.132	Otolemur_garnettii
ENSTTRG00000003343	PSPC1	100	92.131	ENSOARG00000014163	PSPC1	100	92.131	Ovis_aries
ENSTTRG00000003343	PSPC1	90	92.258	ENSPPAG00000009836	PSPC1	95	96.481	Pan_paniscus
ENSTTRG00000003343	PSPC1	100	97.697	ENSPPRG00000008833	PSPC1	100	97.697	Panthera_pardus
ENSTTRG00000003343	PSPC1	100	83.622	ENSPTIG00000016917	PSPC1	100	83.622	Panthera_tigris_altaica
ENSTTRG00000003343	PSPC1	98	95.136	ENSPTRG00000005677	PSPC1	99	96.920	Pan_troglodytes
ENSTTRG00000003343	PSPC1	100	96.750	ENSPANG00000001992	PSPC1	100	96.750	Papio_anubis
ENSTTRG00000003343	PSPC1	89	75.054	ENSPKIG00000003578	pspc1	86	74.464	Paramormyrops_kingsleyae
ENSTTRG00000003343	PSPC1	99	86.528	ENSPSIG00000005168	PSPC1	99	87.861	Pelodiscus_sinensis
ENSTTRG00000003343	PSPC1	60	69.304	ENSPMGG00000015135	pspc1	87	69.206	Periophthalmus_magnuspinnatus
ENSTTRG00000003343	PSPC1	100	96.169	ENSPEMG00000015214	Pspc1	100	96.169	Peromyscus_maniculatus_bairdii
ENSTTRG00000003343	PSPC1	56	44.918	ENSPMAG00000004618	pspc1	92	44.918	Petromyzon_marinus
ENSTTRG00000003343	PSPC1	99	94.061	ENSPCIG00000017680	PSPC1	100	95.211	Phascolarctos_cinereus
ENSTTRG00000003343	PSPC1	97	65.125	ENSPFOG00000003362	pspc1	97	63.916	Poecilia_formosa
ENSTTRG00000003343	PSPC1	69	65.374	ENSPLAG00000004407	-	52	60.858	Poecilia_latipinna
ENSTTRG00000003343	PSPC1	99	63.687	ENSPLAG00000011540	pspc1	100	62.523	Poecilia_latipinna
ENSTTRG00000003343	PSPC1	69	65.385	ENSPMEG00000001025	-	52	60.904	Poecilia_mexicana
ENSTTRG00000003343	PSPC1	99	63.315	ENSPMEG00000008322	pspc1	99	62.430	Poecilia_mexicana
ENSTTRG00000003343	PSPC1	99	63.977	ENSPREG00000007786	pspc1	99	62.804	Poecilia_reticulata
ENSTTRG00000003343	PSPC1	100	96.552	ENSPPYG00000005186	PSPC1	100	96.552	Pongo_abelii
ENSTTRG00000003343	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSTTRG00000003343	PSPC1	100	91.412	ENSPCOG00000014364	PSPC1	100	92.161	Propithecus_coquereli
ENSTTRG00000003343	PSPC1	100	93.642	ENSPVAG00000005036	PSPC1	100	94.808	Pteropus_vampyrus
ENSTTRG00000003343	PSPC1	99	57.678	ENSPNYG00000008893	pspc1	100	54.972	Pundamilia_nyererei
ENSTTRG00000003343	PSPC1	99	68.105	ENSPNAG00000016511	pspc1	100	67.917	Pygocentrus_nattereri
ENSTTRG00000003343	PSPC1	100	95.977	ENSRNOG00000020782	Pspc1	100	95.977	Rattus_norvegicus
ENSTTRG00000003343	PSPC1	94	97.541	ENSRBIG00000036057	PSPC1	100	97.541	Rhinopithecus_bieti
ENSTTRG00000003343	PSPC1	100	96.947	ENSRROG00000036334	PSPC1	100	96.947	Rhinopithecus_roxellana
ENSTTRG00000003343	PSPC1	80	88.620	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSTTRG00000003343	PSPC1	100	88.762	ENSSHAG00000004696	PSPC1	100	89.905	Sarcophilus_harrisii
ENSTTRG00000003343	PSPC1	82	79.294	ENSSFOG00015001395	pspc1	89	78.738	Scleropages_formosus
ENSTTRG00000003343	PSPC1	90	66.804	ENSSMAG00000001761	pspc1	86	74.571	Scophthalmus_maximus
ENSTTRG00000003343	PSPC1	90	68.737	ENSSDUG00000010651	pspc1	76	73.853	Seriola_dumerili
ENSTTRG00000003343	PSPC1	90	64.179	ENSSLDG00000004284	pspc1	82	61.731	Seriola_lalandi_dorsalis
ENSTTRG00000003343	PSPC1	100	89.210	ENSSARG00000000888	PSPC1	100	90.385	Sorex_araneus
ENSTTRG00000003343	PSPC1	99	75.142	ENSSPUG00000008550	PSPC1	99	75.803	Sphenodon_punctatus
ENSTTRG00000003343	PSPC1	90	53.830	ENSSPUG00000001136	-	54	60.606	Sphenodon_punctatus
ENSTTRG00000003343	PSPC1	90	68.635	ENSSPAG00000001921	pspc1	86	68.134	Stegastes_partitus
ENSTTRG00000003343	PSPC1	100	99.040	ENSSSCG00000009569	PSPC1	100	99.040	Sus_scrofa
ENSTTRG00000003343	PSPC1	90	94.635	ENSTGUG00000011295	PSPC1	99	94.635	Taeniopygia_guttata
ENSTTRG00000003343	PSPC1	89	63.057	ENSTRUG00000011335	pspc1	77	65.937	Takifugu_rubripes
ENSTTRG00000003343	PSPC1	90	64.831	ENSTNIG00000010358	pspc1	84	66.508	Tetraodon_nigroviridis
ENSTTRG00000003343	PSPC1	100	76.054	ENSTBEG00000002361	PSPC1	100	75.287	Tupaia_belangeri
ENSTTRG00000003343	PSPC1	67	96.848	ENSUAMG00000012309	PSPC1	100	96.848	Ursus_americanus
ENSTTRG00000003343	PSPC1	94	97.536	ENSUMAG00000013993	PSPC1	100	97.536	Ursus_maritimus
ENSTTRG00000003343	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSTTRG00000003343	PSPC1	100	97.313	ENSVVUG00000006414	PSPC1	100	97.313	Vulpes_vulpes
ENSTTRG00000003343	PSPC1	69	71.507	ENSXCOG00000017438	pspc1	86	71.507	Xiphophorus_couchianus
ENSTTRG00000003343	PSPC1	69	71.781	ENSXMAG00000007929	pspc1	86	71.781	Xiphophorus_maculatus