EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTTRG00000006059 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Plus strand
Length: 423286 bases
Position: chrGeneScaffold_2959:55875-479160
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000005733	TUDOR	PF00567.24	2.1e-28	1	1
ENSTTRP00000005733	SNase	PF00565.17	2.5e-62	1	5
ENSTTRP00000005733	SNase	PF00565.17	2.5e-62	2	5
ENSTTRP00000005733	SNase	PF00565.17	2.5e-62	3	5
ENSTTRP00000005733	SNase	PF00565.17	2.5e-62	4	5
ENSTTRP00000005733	SNase	PF00565.17	2.5e-62	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000006061	SND1-201	2733	-	ENSTTRP00000005733	910 (aa)	-	UPI00018B8144

Gene Model

Click here to download ENSTTRG00000006059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000006059's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000006059	SND1	100	94.066	ENSG00000197157	SND1	100	94.066	Homo_sapiens
ENSTTRG00000006059	SND1	100	79.496	ENSAPOG00000017599	snd1	99	80.311	Acanthochromis_polyacanthus
ENSTTRG00000006059	SND1	100	94.298	ENSAMEG00000004664	SND1	94	94.298	Ailuropoda_melanoleuca
ENSTTRG00000006059	SND1	98	77.828	ENSACIG00000003551	snd1	99	77.728	Amphilophus_citrinellus
ENSTTRG00000006059	SND1	100	79.386	ENSAOCG00000014166	snd1	99	80.200	Amphiprion_ocellaris
ENSTTRG00000006059	SND1	100	79.386	ENSAPEG00000007067	snd1	99	80.200	Amphiprion_percula
ENSTTRG00000006059	SND1	98	78.547	ENSATEG00000018475	snd1	88	79.704	Anabas_testudineus
ENSTTRG00000006059	SND1	100	94.286	ENSANAG00000034463	SND1	100	94.286	Aotus_nancymaae
ENSTTRG00000006059	SND1	99	79.341	ENSACLG00000022897	snd1	99	79.955	Astatotilapia_calliptera
ENSTTRG00000006059	SND1	99	80.198	ENSAMXG00000016318	snd1	98	80.735	Astyanax_mexicanus
ENSTTRG00000006059	SND1	100	93.846	ENSBTAG00000010692	SND1	100	93.846	Bos_taurus
ENSTTRG00000006059	SND1	98	44.408	WBGene00006626	tsn-1	98	45.005	Caenorhabditis_elegans
ENSTTRG00000006059	SND1	100	94.066	ENSCJAG00000017668	SND1	100	94.066	Callithrix_jacchus
ENSTTRG00000006059	SND1	100	94.615	ENSCAFG00000001700	SND1	100	94.615	Canis_familiaris
ENSTTRG00000006059	SND1	100	94.615	ENSCAFG00020021639	SND1	100	94.615	Canis_lupus_dingo
ENSTTRG00000006059	SND1	100	94.176	ENSCHIG00000023390	SND1	100	94.176	Capra_hircus
ENSTTRG00000006059	SND1	73	92.077	ENSTSYG00000004979	SND1	96	92.077	Carlito_syrichta
ENSTTRG00000006059	SND1	99	80.509	ENSCAPG00000010677	SND1	98	80.534	Cavia_aperea
ENSTTRG00000006059	SND1	100	93.626	ENSCPOG00000006251	SND1	100	93.626	Cavia_porcellus
ENSTTRG00000006059	SND1	100	94.396	ENSCCAG00000036847	SND1	100	94.396	Cebus_capucinus
ENSTTRG00000006059	SND1	100	94.286	ENSCATG00000035214	SND1	100	94.286	Cercocebus_atys
ENSTTRG00000006059	SND1	100	93.626	ENSCLAG00000011796	SND1	100	93.626	Chinchilla_lanigera
ENSTTRG00000006059	SND1	100	94.286	ENSCSAG00000010182	SND1	100	94.286	Chlorocebus_sabaeus
ENSTTRG00000006059	SND1	78	89.216	ENSCHOG00000002218	SND1	86	89.216	Choloepus_hoffmanni
ENSTTRG00000006059	SND1	100	87.692	ENSCPBG00000018094	SND1	98	88.565	Chrysemys_picta_bellii
ENSTTRG00000006059	SND1	98	54.928	ENSCING00000000524	-	99	54.928	Ciona_intestinalis
ENSTTRG00000006059	SND1	99	55.763	ENSCSAVG00000008807	-	99	55.899	Ciona_savignyi
ENSTTRG00000006059	SND1	100	94.286	ENSCANG00000035119	SND1	100	94.286	Colobus_angolensis_palliatus
ENSTTRG00000006059	SND1	100	92.637	ENSCGRG00001022514	Snd1	100	92.637	Cricetulus_griseus_chok1gshd
ENSTTRG00000006059	SND1	97	92.534	ENSCGRG00000012277	Snd1	99	92.534	Cricetulus_griseus_crigri
ENSTTRG00000006059	SND1	98	79.978	ENSCSEG00000008661	snd1	98	79.978	Cynoglossus_semilaevis
ENSTTRG00000006059	SND1	100	79.825	ENSCVAG00000010316	snd1	100	79.310	Cyprinodon_variegatus
ENSTTRG00000006059	SND1	100	80.175	ENSDARG00000006766	snd1	98	80.979	Danio_rerio
ENSTTRG00000006059	SND1	97	91.094	ENSDNOG00000006795	SND1	100	91.094	Dasypus_novemcinctus
ENSTTRG00000006059	SND1	100	94.176	ENSDORG00000000336	Snd1	100	94.176	Dipodomys_ordii
ENSTTRG00000006059	SND1	98	48.160	FBgn0035121	Tudor-SN	98	48.160	Drosophila_melanogaster
ENSTTRG00000006059	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSTTRG00000006059	SND1	51	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSTTRG00000006059	SND1	100	92.873	ENSEASG00005008513	SND1	100	92.873	Equus_asinus_asinus
ENSTTRG00000006059	SND1	100	94.396	ENSECAG00000011451	SND1	100	94.396	Equus_caballus
ENSTTRG00000006059	SND1	100	82.527	ENSEEUG00000014737	SND1	100	82.527	Erinaceus_europaeus
ENSTTRG00000006059	SND1	99	78.399	ENSELUG00000001805	snd1	95	79.264	Esox_lucius
ENSTTRG00000006059	SND1	100	94.396	ENSFCAG00000008289	SND1	100	94.396	Felis_catus
ENSTTRG00000006059	SND1	100	93.736	ENSFDAG00000015881	SND1	100	93.736	Fukomys_damarensis
ENSTTRG00000006059	SND1	99	77.886	ENSFHEG00000004093	snd1	97	80.093	Fundulus_heteroclitus
ENSTTRG00000006059	SND1	64	73.729	ENSGMOG00000018932	snd1	64	73.729	Gadus_morhua
ENSTTRG00000006059	SND1	100	79.934	ENSGAFG00000008421	snd1	99	80.756	Gambusia_affinis
ENSTTRG00000006059	SND1	100	49.837	ENSGACG00000019793	snd1	98	50.221	Gasterosteus_aculeatus
ENSTTRG00000006059	SND1	100	94.286	ENSGGOG00000009614	SND1	100	94.286	Gorilla_gorilla
ENSTTRG00000006059	SND1	99	79.515	ENSHBUG00000019135	snd1	99	79.955	Haplochromis_burtoni
ENSTTRG00000006059	SND1	100	93.516	ENSHGLG00000003618	SND1	100	93.516	Heterocephalus_glaber_female
ENSTTRG00000006059	SND1	99	93.039	ENSHGLG00100012449	SND1	100	93.039	Heterocephalus_glaber_male
ENSTTRG00000006059	SND1	100	78.509	ENSHCOG00000005266	snd1	99	79.642	Hippocampus_comes
ENSTTRG00000006059	SND1	100	78.775	ENSIPUG00000013279	snd1	98	79.733	Ictalurus_punctatus
ENSTTRG00000006059	SND1	100	94.066	ENSSTOG00000002140	SND1	100	94.066	Ictidomys_tridecemlineatus
ENSTTRG00000006059	SND1	100	94.066	ENSJJAG00000009561	Snd1	100	94.066	Jaculus_jaculus
ENSTTRG00000006059	SND1	100	79.605	ENSKMAG00000016997	snd1	98	80.537	Kryptolebias_marmoratus
ENSTTRG00000006059	SND1	100	79.530	ENSLBEG00000013563	snd1	99	79.422	Labrus_bergylta
ENSTTRG00000006059	SND1	99	80.926	ENSLOCG00000015537	snd1	98	80.926	Lepisosteus_oculatus
ENSTTRG00000006059	SND1	100	93.516	ENSLAFG00000009696	SND1	100	93.516	Loxodonta_africana
ENSTTRG00000006059	SND1	100	94.286	ENSMFAG00000038114	SND1	100	94.286	Macaca_fascicularis
ENSTTRG00000006059	SND1	100	94.286	ENSMMUG00000015432	SND1	100	94.286	Macaca_mulatta
ENSTTRG00000006059	SND1	100	94.286	ENSMNEG00000039808	SND1	100	94.286	Macaca_nemestrina
ENSTTRG00000006059	SND1	100	94.396	ENSMLEG00000029040	SND1	100	94.396	Mandrillus_leucophaeus
ENSTTRG00000006059	SND1	99	79.383	ENSMAMG00000011739	snd1	98	80.022	Mastacembelus_armatus
ENSTTRG00000006059	SND1	99	79.341	ENSMZEG00005005681	snd1	99	79.955	Maylandia_zebra
ENSTTRG00000006059	SND1	100	94.286	ENSMICG00000000097	SND1	100	94.286	Microcebus_murinus
ENSTTRG00000006059	SND1	100	93.407	ENSMOCG00000005040	Snd1	100	93.407	Microtus_ochrogaster
ENSTTRG00000006059	SND1	100	79.167	ENSMMOG00000001795	snd1	99	79.978	Mola_mola
ENSTTRG00000006059	SND1	99	91.304	ENSMODG00000015182	SND1	99	91.304	Monodelphis_domestica
ENSTTRG00000006059	SND1	100	78.947	ENSMALG00000012071	snd1	98	79.688	Monopterus_albus
ENSTTRG00000006059	SND1	100	93.077	MGP_CAROLIEiJ_G0028159	Snd1	100	93.077	Mus_caroli
ENSTTRG00000006059	SND1	100	92.857	ENSMUSG00000001424	Snd1	100	92.857	Mus_musculus
ENSTTRG00000006059	SND1	100	93.077	MGP_PahariEiJ_G0021917	Snd1	100	93.077	Mus_pahari
ENSTTRG00000006059	SND1	100	93.077	MGP_SPRETEiJ_G0029159	Snd1	100	93.077	Mus_spretus
ENSTTRG00000006059	SND1	100	93.956	ENSMPUG00000006545	SND1	100	93.956	Mustela_putorius_furo
ENSTTRG00000006059	SND1	97	92.291	ENSMLUG00000017130	SND1	100	92.291	Myotis_lucifugus
ENSTTRG00000006059	SND1	100	93.516	ENSNGAG00000011186	Snd1	100	93.516	Nannospalax_galili
ENSTTRG00000006059	SND1	99	79.231	ENSNBRG00000006681	snd1	99	79.844	Neolamprologus_brichardi
ENSTTRG00000006059	SND1	100	94.176	ENSNLEG00000012263	SND1	100	94.176	Nomascus_leucogenys
ENSTTRG00000006059	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSTTRG00000006059	SND1	100	93.736	ENSODEG00000011502	SND1	100	93.736	Octodon_degus
ENSTTRG00000006059	SND1	99	78.901	ENSONIG00000011481	snd1	96	79.844	Oreochromis_niloticus
ENSTTRG00000006059	SND1	98	90.090	ENSOANG00000000817	SND1	99	89.521	Ornithorhynchus_anatinus
ENSTTRG00000006059	SND1	100	93.187	ENSOCUG00000001620	SND1	100	93.187	Oryctolagus_cuniculus
ENSTTRG00000006059	SND1	98	79.665	ENSORLG00000015201	snd1	98	79.665	Oryzias_latipes
ENSTTRG00000006059	SND1	98	79.777	ENSORLG00020013991	snd1	98	79.777	Oryzias_latipes_hni
ENSTTRG00000006059	SND1	98	79.777	ENSORLG00015012436	snd1	98	79.777	Oryzias_latipes_hsok
ENSTTRG00000006059	SND1	100	78.947	ENSOMEG00000006406	snd1	98	80.089	Oryzias_melastigma
ENSTTRG00000006059	SND1	100	93.860	ENSOGAG00000013356	SND1	94	93.860	Otolemur_garnettii
ENSTTRG00000006059	SND1	97	91.412	ENSOARG00000002149	SND1	100	91.412	Ovis_aries
ENSTTRG00000006059	SND1	100	94.176	ENSPPAG00000042947	SND1	100	94.176	Pan_paniscus
ENSTTRG00000006059	SND1	100	94.396	ENSPPRG00000004494	SND1	100	94.396	Panthera_pardus
ENSTTRG00000006059	SND1	100	94.286	ENSPTIG00000014214	SND1	100	94.286	Panthera_tigris_altaica
ENSTTRG00000006059	SND1	100	94.176	ENSPTRG00000023911	SND1	100	94.176	Pan_troglodytes
ENSTTRG00000006059	SND1	97	94.118	ENSPANG00000011997	SND1	99	94.118	Papio_anubis
ENSTTRG00000006059	SND1	99	77.508	ENSPKIG00000023494	snd1	98	77.802	Paramormyrops_kingsleyae
ENSTTRG00000006059	SND1	92	78.323	ENSPMGG00000003629	snd1	100	78.323	Periophthalmus_magnuspinnatus
ENSTTRG00000006059	SND1	100	93.407	ENSPEMG00000010240	Snd1	100	93.407	Peromyscus_maniculatus_bairdii
ENSTTRG00000006059	SND1	97	69.831	ENSPMAG00000007915	-	99	69.831	Petromyzon_marinus
ENSTTRG00000006059	SND1	100	91.868	ENSPCIG00000011561	SND1	100	91.868	Phascolarctos_cinereus
ENSTTRG00000006059	SND1	100	79.386	ENSPFOG00000001557	snd1	99	80.200	Poecilia_formosa
ENSTTRG00000006059	SND1	100	79.386	ENSPLAG00000018459	snd1	96	80.200	Poecilia_latipinna
ENSTTRG00000006059	SND1	100	79.825	ENSPMEG00000006803	snd1	99	80.645	Poecilia_mexicana
ENSTTRG00000006059	SND1	100	79.715	ENSPREG00000002189	snd1	99	80.534	Poecilia_reticulata
ENSTTRG00000006059	SND1	93	93.672	ENSPPYG00000017972	SND1	100	93.672	Pongo_abelii
ENSTTRG00000006059	SND1	100	81.978	ENSPCAG00000011305	SND1	100	81.978	Procavia_capensis
ENSTTRG00000006059	SND1	100	94.286	ENSPCOG00000026791	SND1	100	94.286	Propithecus_coquereli
ENSTTRG00000006059	SND1	100	92.418	ENSPVAG00000013945	SND1	100	92.418	Pteropus_vampyrus
ENSTTRG00000006059	SND1	99	79.011	ENSPNYG00000000932	snd1	99	79.955	Pundamilia_nyererei
ENSTTRG00000006059	SND1	100	79.431	ENSPNAG00000001206	snd1	98	80.333	Pygocentrus_nattereri
ENSTTRG00000006059	SND1	99	92.731	ENSRNOG00000031173	Snd1	99	92.731	Rattus_norvegicus
ENSTTRG00000006059	SND1	76	88.151	ENSRBIG00000027782	-	93	91.825	Rhinopithecus_bieti
ENSTTRG00000006059	SND1	100	94.286	ENSRROG00000033020	SND1	100	94.286	Rhinopithecus_roxellana
ENSTTRG00000006059	SND1	100	94.286	ENSSBOG00000032461	SND1	100	94.286	Saimiri_boliviensis_boliviensis
ENSTTRG00000006059	SND1	98	88.739	ENSSHAG00000015359	SND1	100	88.739	Sarcophilus_harrisii
ENSTTRG00000006059	SND1	100	78.564	ENSSFOG00015001103	snd1	98	79.578	Scleropages_formosus
ENSTTRG00000006059	SND1	98	79.418	ENSSMAG00000001932	snd1	93	79.176	Scophthalmus_maximus
ENSTTRG00000006059	SND1	100	79.276	ENSSDUG00000002699	snd1	92	80.089	Seriola_dumerili
ENSTTRG00000006059	SND1	100	72.039	ENSSLDG00000001950	snd1	98	72.747	Seriola_lalandi_dorsalis
ENSTTRG00000006059	SND1	86	98.113	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSTTRG00000006059	SND1	73	81.391	ENSSPUG00000017586	SND1	96	81.391	Sphenodon_punctatus
ENSTTRG00000006059	SND1	75	78.680	ENSSPAG00000021398	snd1	96	80.628	Stegastes_partitus
ENSTTRG00000006059	SND1	100	94.066	ENSSSCG00000016590	SND1	100	94.066	Sus_scrofa
ENSTTRG00000006059	SND1	99	81.879	ENSTRUG00000014067	snd1	98	79.418	Takifugu_rubripes
ENSTTRG00000006059	SND1	100	79.057	ENSTNIG00000011019	snd1	98	79.978	Tetraodon_nigroviridis
ENSTTRG00000006059	SND1	93	87.972	ENSTBEG00000003999	SND1	100	87.972	Tupaia_belangeri
ENSTTRG00000006059	SND1	86	99.240	ENSUAMG00000005604	-	93	99.240	Ursus_americanus
ENSTTRG00000006059	SND1	71	88.542	ENSUAMG00000002820	-	90	88.542	Ursus_americanus
ENSTTRG00000006059	SND1	100	94.615	ENSUMAG00000005960	SND1	100	94.615	Ursus_maritimus
ENSTTRG00000006059	SND1	72	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSTTRG00000006059	SND1	100	94.396	ENSVVUG00000007226	SND1	100	94.396	Vulpes_vulpes
ENSTTRG00000006059	SND1	97	80.904	ENSXETG00000023043	snd1	100	80.778	Xenopus_tropicalis
ENSTTRG00000006059	SND1	92	76.841	ENSXCOG00000013629	snd1	99	76.841	Xiphophorus_couchianus
ENSTTRG00000006059	SND1	100	79.934	ENSXMAG00000011469	snd1	99	80.756	Xiphophorus_maculatus