EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTTRG00000011544 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Minus strand
Length: 34320 bases
Position: chrscaffold_83580:6729-41048
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000010948	UPF1_Zn_bind	PF09416.10	3.4e-33	1	1
ENSTTRP00000010948	ResIII	PF04851.15	1.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000011544	UPF1-201	3339	-	ENSTTRP00000010948	1112 (aa)	-	UPI00018B5319

Gene Model

Click here to download ENSTTRG00000011544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000011544's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000011544	UPF1	100	94.727	ENSG00000005007	UPF1	100	95.353	Homo_sapiens
ENSTTRG00000011544	UPF1	100	89.088	ENSAPOG00000010916	-	100	89.177	Acanthochromis_polyacanthus
ENSTTRG00000011544	UPF1	100	87.779	ENSAPOG00000023773	upf1	100	87.986	Acanthochromis_polyacanthus
ENSTTRG00000011544	UPF1	100	93.274	ENSAMEG00000011474	UPF1	100	93.628	Ailuropoda_melanoleuca
ENSTTRG00000011544	UPF1	92	90.829	ENSACIG00000010985	-	100	90.927	Amphilophus_citrinellus
ENSTTRG00000011544	UPF1	100	87.611	ENSACIG00000019949	upf1	100	88.046	Amphilophus_citrinellus
ENSTTRG00000011544	UPF1	100	89.177	ENSAOCG00000006352	-	100	89.267	Amphiprion_ocellaris
ENSTTRG00000011544	UPF1	100	87.276	ENSAOCG00000018519	upf1	100	87.986	Amphiprion_ocellaris
ENSTTRG00000011544	UPF1	100	89.177	ENSAPEG00000006292	-	100	89.267	Amphiprion_percula
ENSTTRG00000011544	UPF1	100	87.276	ENSAPEG00000016344	upf1	100	87.986	Amphiprion_percula
ENSTTRG00000011544	UPF1	100	86.508	ENSATEG00000017867	upf1	100	87.390	Anabas_testudineus
ENSTTRG00000011544	UPF1	100	89.177	ENSATEG00000016606	-	100	89.267	Anabas_testudineus
ENSTTRG00000011544	UPF1	93	93.928	ENSAPLG00000009175	UPF1	100	93.928	Anas_platyrhynchos
ENSTTRG00000011544	UPF1	98	89.767	ENSANAG00000024107	UPF1	95	93.530	Aotus_nancymaae
ENSTTRG00000011544	UPF1	100	88.909	ENSACLG00000022630	-	100	88.909	Astatotilapia_calliptera
ENSTTRG00000011544	UPF1	100	87.344	ENSACLG00000007181	upf1	100	87.779	Astatotilapia_calliptera
ENSTTRG00000011544	UPF1	100	89.544	ENSAMXG00000042187	upf1	100	90.080	Astyanax_mexicanus
ENSTTRG00000011544	UPF1	100	95.120	ENSBTAG00000020922	UPF1	100	95.120	Bos_taurus
ENSTTRG00000011544	UPF1	89	48.467	WBGene00004880	smg-2	99	45.961	Caenorhabditis_elegans
ENSTTRG00000011544	UPF1	100	93.805	ENSCJAG00000019627	UPF1	100	94.425	Callithrix_jacchus
ENSTTRG00000011544	UPF1	100	93.805	ENSCAFG00000014578	UPF1	100	94.602	Canis_familiaris
ENSTTRG00000011544	UPF1	100	95.621	ENSCAFG00020012347	UPF1	100	95.621	Canis_lupus_dingo
ENSTTRG00000011544	UPF1	100	96.057	ENSCHIG00000011018	UPF1	100	96.057	Capra_hircus
ENSTTRG00000011544	UPF1	93	94.672	ENSTSYG00000008877	UPF1	99	93.621	Carlito_syrichta
ENSTTRG00000011544	UPF1	93	94.101	ENSCAPG00000005758	UPF1	95	94.101	Cavia_aperea
ENSTTRG00000011544	UPF1	100	92.389	ENSCPOG00000025463	UPF1	100	92.301	Cavia_porcellus
ENSTTRG00000011544	UPF1	100	94.727	ENSCCAG00000032175	UPF1	100	95.353	Cebus_capucinus
ENSTTRG00000011544	UPF1	93	94.842	ENSCATG00000040306	UPF1	98	94.677	Cercocebus_atys
ENSTTRG00000011544	UPF1	95	93.721	ENSCLAG00000004037	UPF1	99	94.672	Chinchilla_lanigera
ENSTTRG00000011544	UPF1	100	94.727	ENSCSAG00000005276	UPF1	100	95.353	Chlorocebus_sabaeus
ENSTTRG00000011544	UPF1	100	92.761	ENSCPBG00000012513	UPF1	100	92.870	Chrysemys_picta_bellii
ENSTTRG00000011544	UPF1	77	74.168	ENSCING00000021399	-	99	74.168	Ciona_intestinalis
ENSTTRG00000011544	UPF1	99	68.822	ENSCSAVG00000006533	-	99	68.822	Ciona_savignyi
ENSTTRG00000011544	UPF1	93	94.862	ENSCANG00000029819	UPF1	99	93.838	Colobus_angolensis_palliatus
ENSTTRG00000011544	UPF1	100	94.355	ENSCGRG00001021067	Upf1	100	94.534	Cricetulus_griseus_chok1gshd
ENSTTRG00000011544	UPF1	94	93.346	ENSCGRG00000013480	Upf1	99	93.346	Cricetulus_griseus_crigri
ENSTTRG00000011544	UPF1	100	89.078	ENSCSEG00000016159	-	100	89.078	Cynoglossus_semilaevis
ENSTTRG00000011544	UPF1	100	82.826	ENSCSEG00000017239	upf1	100	83.005	Cynoglossus_semilaevis
ENSTTRG00000011544	UPF1	100	88.909	ENSCVAG00000010561	upf1	100	88.909	Cyprinodon_variegatus
ENSTTRG00000011544	UPF1	100	89.366	ENSDARG00000016302	upf1	100	89.902	Danio_rerio
ENSTTRG00000011544	UPF1	96	90.269	ENSDORG00000009984	Upf1	96	90.994	Dipodomys_ordii
ENSTTRG00000011544	UPF1	85	67.358	FBgn0030354	Upf1	84	64.107	Drosophila_melanogaster
ENSTTRG00000011544	UPF1	55	79.024	ENSEBUG00000010069	upf1	96	78.675	Eptatretus_burgeri
ENSTTRG00000011544	UPF1	100	95.699	ENSEASG00005006549	UPF1	100	95.699	Equus_asinus_asinus
ENSTTRG00000011544	UPF1	100	95.699	ENSECAG00000010639	UPF1	100	95.699	Equus_caballus
ENSTTRG00000011544	UPF1	100	86.922	ENSELUG00000020917	upf1	100	87.189	Esox_lucius
ENSTTRG00000011544	UPF1	100	88.267	ENSELUG00000012916	-	100	88.277	Esox_lucius
ENSTTRG00000011544	UPF1	100	93.717	ENSFCAG00000009757	UPF1	100	94.513	Felis_catus
ENSTTRG00000011544	UPF1	94	94.185	ENSFALG00000009312	UPF1	96	94.185	Ficedula_albicollis
ENSTTRG00000011544	UPF1	96	93.222	ENSFDAG00000014816	UPF1	99	94.577	Fukomys_damarensis
ENSTTRG00000011544	UPF1	85	93.829	ENSFHEG00000016276	-	96	94.011	Fundulus_heteroclitus
ENSTTRG00000011544	UPF1	100	84.916	ENSFHEG00000006428	upf1	100	84.916	Fundulus_heteroclitus
ENSTTRG00000011544	UPF1	100	87.688	ENSGMOG00000007541	upf1	100	88.220	Gadus_morhua
ENSTTRG00000011544	UPF1	100	93.465	ENSGALG00000003220	UPF1	100	93.644	Gallus_gallus
ENSTTRG00000011544	UPF1	62	95.265	ENSGAFG00000015443	-	88	92.917	Gambusia_affinis
ENSTTRG00000011544	UPF1	100	88.809	ENSGAFG00000004831	upf1	100	88.809	Gambusia_affinis
ENSTTRG00000011544	UPF1	100	93.100	ENSGAGG00000022217	UPF1	100	93.465	Gopherus_agassizii
ENSTTRG00000011544	UPF1	93	95.865	ENSGGOG00000002608	UPF1	99	95.865	Gorilla_gorilla
ENSTTRG00000011544	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSTTRG00000011544	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSTTRG00000011544	UPF1	100	93.363	ENSHGLG00000010900	UPF1	100	93.894	Heterocephalus_glaber_female
ENSTTRG00000011544	UPF1	96	90.642	ENSHGLG00100005904	UPF1	98	91.667	Heterocephalus_glaber_male
ENSTTRG00000011544	UPF1	100	88.093	ENSHCOG00000008918	upf1	100	89.845	Hippocampus_comes
ENSTTRG00000011544	UPF1	100	89.991	ENSIPUG00000005108	UPF1	100	90.438	Ictalurus_punctatus
ENSTTRG00000011544	UPF1	100	94.549	ENSSTOG00000009196	UPF1	100	95.174	Ictidomys_tridecemlineatus
ENSTTRG00000011544	UPF1	100	93.434	ENSJJAG00000023151	Upf1	100	93.434	Jaculus_jaculus
ENSTTRG00000011544	UPF1	100	89.267	ENSKMAG00000004962	upf1	100	89.267	Kryptolebias_marmoratus
ENSTTRG00000011544	UPF1	100	88.829	ENSLBEG00000027848	-	100	88.919	Labrus_bergylta
ENSTTRG00000011544	UPF1	100	85.954	ENSLBEG00000014862	upf1	100	87.191	Labrus_bergylta
ENSTTRG00000011544	UPF1	63	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSTTRG00000011544	UPF1	100	91.585	ENSLOCG00000002072	upf1	100	91.674	Lepisosteus_oculatus
ENSTTRG00000011544	UPF1	100	93.440	ENSLAFG00000014963	UPF1	100	93.706	Loxodonta_africana
ENSTTRG00000011544	UPF1	100	94.055	ENSMFAG00000037748	UPF1	100	94.425	Macaca_fascicularis
ENSTTRG00000011544	UPF1	100	94.144	ENSMMUG00000023286	UPF1	100	94.425	Macaca_mulatta
ENSTTRG00000011544	UPF1	100	94.055	ENSMNEG00000000046	UPF1	100	94.425	Macaca_nemestrina
ENSTTRG00000011544	UPF1	93	94.862	ENSMLEG00000028404	UPF1	99	94.862	Mandrillus_leucophaeus
ENSTTRG00000011544	UPF1	100	86.243	ENSMAMG00000006229	upf1	100	87.302	Mastacembelus_armatus
ENSTTRG00000011544	UPF1	100	88.204	ENSMAMG00000006231	-	100	88.740	Mastacembelus_armatus
ENSTTRG00000011544	UPF1	100	88.909	ENSMZEG00005016386	-	100	88.909	Maylandia_zebra
ENSTTRG00000011544	UPF1	100	86.344	ENSMZEG00005003489	upf1	100	87.600	Maylandia_zebra
ENSTTRG00000011544	UPF1	93	93.536	ENSMGAG00000004745	UPF1	100	93.536	Meleagris_gallopavo
ENSTTRG00000011544	UPF1	95	92.579	ENSMAUG00000011398	Upf1	97	92.910	Mesocricetus_auratus
ENSTTRG00000011544	UPF1	100	94.549	ENSMICG00000001659	UPF1	100	95.174	Microcebus_murinus
ENSTTRG00000011544	UPF1	100	93.345	ENSMOCG00000005699	Upf1	100	93.523	Microtus_ochrogaster
ENSTTRG00000011544	UPF1	100	87.097	ENSMMOG00000007881	upf1	100	87.645	Mola_mola
ENSTTRG00000011544	UPF1	93	88.421	ENSMMOG00000007537	-	99	88.517	Mola_mola
ENSTTRG00000011544	UPF1	100	93.027	ENSMODG00000003689	UPF1	100	93.292	Monodelphis_domestica
ENSTTRG00000011544	UPF1	100	87.276	ENSMALG00000000144	upf1	100	87.634	Monopterus_albus
ENSTTRG00000011544	UPF1	100	87.979	ENSMALG00000018100	-	100	88.068	Monopterus_albus
ENSTTRG00000011544	UPF1	100	94.265	MGP_CAROLIEiJ_G0031142	Upf1	100	94.444	Mus_caroli
ENSTTRG00000011544	UPF1	100	94.265	ENSMUSG00000058301	Upf1	100	94.444	Mus_musculus
ENSTTRG00000011544	UPF1	100	94.265	MGP_PahariEiJ_G0021607	Upf1	100	94.444	Mus_pahari
ENSTTRG00000011544	UPF1	100	94.265	MGP_SPRETEiJ_G0032260	Upf1	100	94.444	Mus_spretus
ENSTTRG00000011544	UPF1	100	95.621	ENSMPUG00000015516	UPF1	100	95.621	Mustela_putorius_furo
ENSTTRG00000011544	UPF1	99	95.247	ENSMLUG00000012122	UPF1	99	95.247	Myotis_lucifugus
ENSTTRG00000011544	UPF1	100	92.996	ENSNGAG00000024107	Upf1	100	93.351	Nannospalax_galili
ENSTTRG00000011544	UPF1	100	85.651	ENSNBRG00000000670	upf1	100	86.084	Neolamprologus_brichardi
ENSTTRG00000011544	UPF1	100	85.677	ENSNBRG00000022069	-	100	89.893	Neolamprologus_brichardi
ENSTTRG00000011544	UPF1	93	89.876	ENSNLEG00000006062	UPF1	99	89.876	Nomascus_leucogenys
ENSTTRG00000011544	UPF1	73	94.510	ENSMEUG00000014146	-	73	94.510	Notamacropus_eugenii
ENSTTRG00000011544	UPF1	93	87.596	ENSOPRG00000014018	UPF1	99	87.596	Ochotona_princeps
ENSTTRG00000011544	UPF1	100	92.458	ENSODEG00000012426	UPF1	100	92.813	Octodon_degus
ENSTTRG00000011544	UPF1	100	86.608	ENSONIG00000010452	upf1	100	87.865	Oreochromis_niloticus
ENSTTRG00000011544	UPF1	100	88.998	ENSONIG00000012729	-	100	88.998	Oreochromis_niloticus
ENSTTRG00000011544	UPF1	100	92.737	ENSOANG00000004568	UPF1	100	92.737	Ornithorhynchus_anatinus
ENSTTRG00000011544	UPF1	100	88.998	ENSORLG00000008453	upf1	100	88.998	Oryzias_latipes
ENSTTRG00000011544	UPF1	100	88.919	ENSORLG00020014758	upf1	100	88.919	Oryzias_latipes_hni
ENSTTRG00000011544	UPF1	100	88.919	ENSORLG00015010165	upf1	100	88.919	Oryzias_latipes_hsok
ENSTTRG00000011544	UPF1	100	89.088	ENSOMEG00000003665	upf1	100	89.088	Oryzias_melastigma
ENSTTRG00000011544	UPF1	100	94.817	ENSOGAG00000012866	UPF1	100	95.442	Otolemur_garnettii
ENSTTRG00000011544	UPF1	96	92.634	ENSOARG00000010739	UPF1	100	92.634	Ovis_aries
ENSTTRG00000011544	UPF1	93	94.862	ENSPPAG00000043884	UPF1	98	93.832	Pan_paniscus
ENSTTRG00000011544	UPF1	100	93.717	ENSPPRG00000023470	UPF1	100	94.513	Panthera_pardus
ENSTTRG00000011544	UPF1	93	93.666	ENSPTIG00000010159	UPF1	99	93.666	Panthera_tigris_altaica
ENSTTRG00000011544	UPF1	100	94.055	ENSPTRG00000010721	UPF1	100	94.425	Pan_troglodytes
ENSTTRG00000011544	UPF1	100	94.055	ENSPANG00000008847	UPF1	100	94.425	Papio_anubis
ENSTTRG00000011544	UPF1	91	90.900	ENSPKIG00000006069	upf1	99	88.626	Paramormyrops_kingsleyae
ENSTTRG00000011544	UPF1	69	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSTTRG00000011544	UPF1	100	85.638	ENSPMGG00000017327	upf1	100	85.841	Periophthalmus_magnuspinnatus
ENSTTRG00000011544	UPF1	100	93.434	ENSPEMG00000001085	Upf1	100	93.611	Peromyscus_maniculatus_bairdii
ENSTTRG00000011544	UPF1	100	83.378	ENSPMAG00000001206	upf1	100	83.200	Petromyzon_marinus
ENSTTRG00000011544	UPF1	100	94.186	ENSPCIG00000006156	UPF1	100	94.365	Phascolarctos_cinereus
ENSTTRG00000011544	UPF1	100	88.899	ENSPLAG00000016232	-	100	88.899	Poecilia_latipinna
ENSTTRG00000011544	UPF1	100	85.892	ENSPLAG00000018155	-	100	85.892	Poecilia_latipinna
ENSTTRG00000011544	UPF1	100	88.819	ENSPMEG00000016319	-	100	88.819	Poecilia_mexicana
ENSTTRG00000011544	UPF1	100	86.416	ENSPMEG00000011443	-	100	86.416	Poecilia_mexicana
ENSTTRG00000011544	UPF1	100	88.720	ENSPREG00000011247	-	100	88.720	Poecilia_reticulata
ENSTTRG00000011544	UPF1	100	86.335	ENSPREG00000009940	upf1	100	86.335	Poecilia_reticulata
ENSTTRG00000011544	UPF1	100	88.850	ENSPPYG00000009752	UPF1	100	89.469	Pongo_abelii
ENSTTRG00000011544	UPF1	69	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSTTRG00000011544	UPF1	100	94.144	ENSPCOG00000023813	UPF1	100	94.248	Propithecus_coquereli
ENSTTRG00000011544	UPF1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSTTRG00000011544	UPF1	100	86.344	ENSPNYG00000003694	upf1	100	87.600	Pundamilia_nyererei
ENSTTRG00000011544	UPF1	100	88.909	ENSPNYG00000016731	-	100	88.909	Pundamilia_nyererei
ENSTTRG00000011544	UPF1	100	89.544	ENSPNAG00000025614	upf1	100	90.080	Pygocentrus_nattereri
ENSTTRG00000011544	UPF1	100	94.265	ENSRNOG00000020134	Upf1	100	94.444	Rattus_norvegicus
ENSTTRG00000011544	UPF1	93	92.483	ENSRBIG00000013894	UPF1	97	99.229	Rhinopithecus_bieti
ENSTTRG00000011544	UPF1	93	94.862	ENSRROG00000040935	UPF1	97	99.229	Rhinopithecus_roxellana
ENSTTRG00000011544	UPF1	71	53.817	YMR080C	NAM7	82	53.817	Saccharomyces_cerevisiae
ENSTTRG00000011544	UPF1	93	94.762	ENSSBOG00000023632	UPF1	96	94.762	Saimiri_boliviensis_boliviensis
ENSTTRG00000011544	UPF1	93	93.922	ENSSHAG00000010499	UPF1	100	93.922	Sarcophilus_harrisii
ENSTTRG00000011544	UPF1	100	91.413	ENSSFOG00015021095	upf1	99	93.193	Scleropages_formosus
ENSTTRG00000011544	UPF1	100	89.008	ENSSMAG00000021018	-	100	89.097	Scophthalmus_maximus
ENSTTRG00000011544	UPF1	100	85.601	ENSSMAG00000005055	upf1	100	86.496	Scophthalmus_maximus
ENSTTRG00000011544	UPF1	100	86.508	ENSSDUG00000013320	upf1	100	87.566	Seriola_dumerili
ENSTTRG00000011544	UPF1	100	89.187	ENSSDUG00000009629	-	100	89.276	Seriola_dumerili
ENSTTRG00000011544	UPF1	100	87.278	ENSSLDG00000020868	upf1	100	87.833	Seriola_lalandi_dorsalis
ENSTTRG00000011544	UPF1	100	89.187	ENSSLDG00000006878	-	100	89.276	Seriola_lalandi_dorsalis
ENSTTRG00000011544	UPF1	100	93.011	ENSSPUG00000010538	UPF1	100	93.119	Sphenodon_punctatus
ENSTTRG00000011544	UPF1	100	89.167	ENSSPAG00000011521	-	100	89.167	Stegastes_partitus
ENSTTRG00000011544	UPF1	100	85.765	ENSSPAG00000000003	upf1	100	85.804	Stegastes_partitus
ENSTTRG00000011544	UPF1	100	95.968	ENSSSCG00000039301	UPF1	100	95.968	Sus_scrofa
ENSTTRG00000011544	UPF1	83	85.532	ENSTGUG00000001057	UPF1	100	88.609	Taeniopygia_guttata
ENSTTRG00000011544	UPF1	100	88.004	ENSTRUG00000005131	-	100	88.093	Takifugu_rubripes
ENSTTRG00000011544	UPF1	100	87.007	ENSTRUG00000000150	upf1	100	87.007	Takifugu_rubripes
ENSTTRG00000011544	UPF1	100	95.532	ENSUAMG00000007093	UPF1	100	95.532	Ursus_americanus
ENSTTRG00000011544	UPF1	94	95.690	ENSUMAG00000006652	UPF1	99	95.777	Ursus_maritimus
ENSTTRG00000011544	UPF1	100	95.621	ENSVVUG00000007797	UPF1	100	95.621	Vulpes_vulpes
ENSTTRG00000011544	UPF1	100	78.767	ENSXETG00000013602	upf1	100	78.364	Xenopus_tropicalis
ENSTTRG00000011544	UPF1	92	90.883	ENSXCOG00000005764	-	100	90.883	Xiphophorus_couchianus
ENSTTRG00000011544	UPF1	97	86.111	ENSXCOG00000015275	-	96	86.111	Xiphophorus_couchianus
ENSTTRG00000011544	UPF1	100	88.640	ENSXMAG00000002540	-	100	88.640	Xiphophorus_maculatus
ENSTTRG00000011544	UPF1	100	86.482	ENSXMAG00000001703	-	100	86.482	Xiphophorus_maculatus