EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTTRG00000012914 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Minus strand
Length: 95484 bases
Position: chrGeneScaffold_874:28515-123998
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000012255	XRN_N	PF03159.18	2.4e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000012918	XRN1-201	5103	-	ENSTTRP00000012255	1700 (aa)	-	UPI00018B5D1E

Gene Model

Click here to download ENSTTRG00000012914's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000012914's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000012914	XRN1	100	88.746	ENSG00000114127	XRN1	100	98.182	Homo_sapiens
ENSTTRG00000012914	XRN1	100	57.968	ENSAPOG00000000622	xrn1	93	74.573	Acanthochromis_polyacanthus
ENSTTRG00000012914	XRN1	100	88.215	ENSAMEG00000012538	XRN1	100	88.215	Ailuropoda_melanoleuca
ENSTTRG00000012914	XRN1	95	69.968	ENSACIG00000001057	xrn1	98	69.919	Amphilophus_citrinellus
ENSTTRG00000012914	XRN1	100	57.605	ENSAOCG00000014097	xrn1	86	83.607	Amphiprion_ocellaris
ENSTTRG00000012914	XRN1	100	57.705	ENSAPEG00000006620	xrn1	100	57.567	Amphiprion_percula
ENSTTRG00000012914	XRN1	94	69.133	ENSATEG00000009752	xrn1	99	69.206	Anabas_testudineus
ENSTTRG00000012914	XRN1	99	71.816	ENSAPLG00000004905	XRN1	100	71.412	Anas_platyrhynchos
ENSTTRG00000012914	XRN1	100	68.083	ENSACAG00000004985	XRN1	100	67.859	Anolis_carolinensis
ENSTTRG00000012914	XRN1	100	88.459	ENSANAG00000029013	XRN1	99	92.586	Aotus_nancymaae
ENSTTRG00000012914	XRN1	100	57.022	ENSACLG00000004806	xrn1	99	57.328	Astatotilapia_calliptera
ENSTTRG00000012914	XRN1	99	56.741	ENSAMXG00000019370	xrn1	95	87.379	Astyanax_mexicanus
ENSTTRG00000012914	XRN1	100	91.432	ENSBTAG00000011524	XRN1	100	91.432	Bos_taurus
ENSTTRG00000012914	XRN1	70	38.063	WBGene00012730	xrn-1	80	37.548	Caenorhabditis_elegans
ENSTTRG00000012914	XRN1	100	88.335	ENSCJAG00000001872	XRN1	100	88.335	Callithrix_jacchus
ENSTTRG00000012914	XRN1	100	89.918	ENSCAFG00000007783	XRN1	100	90.035	Canis_familiaris
ENSTTRG00000012914	XRN1	100	88.245	ENSCAFG00020009120	XRN1	99	98.494	Canis_lupus_dingo
ENSTTRG00000012914	XRN1	99	88.384	ENSCHIG00000019192	XRN1	99	88.384	Capra_hircus
ENSTTRG00000012914	XRN1	100	88.173	ENSTSYG00000002705	XRN1	100	88.173	Carlito_syrichta
ENSTTRG00000012914	XRN1	100	88.987	ENSCCAG00000034800	XRN1	99	96.988	Cebus_capucinus
ENSTTRG00000012914	XRN1	100	88.987	ENSCATG00000041794	XRN1	100	89.221	Cercocebus_atys
ENSTTRG00000012914	XRN1	95	86.977	ENSCLAG00000001451	XRN1	99	94.277	Chinchilla_lanigera
ENSTTRG00000012914	XRN1	100	88.928	ENSCSAG00000011265	XRN1	100	89.162	Chlorocebus_sabaeus
ENSTTRG00000012914	XRN1	61	98.701	ENSCHOG00000013961	-	61	98.701	Choloepus_hoffmanni
ENSTTRG00000012914	XRN1	70	43.136	ENSCSAVG00000008584	-	84	50.000	Ciona_savignyi
ENSTTRG00000012914	XRN1	100	89.273	ENSCANG00000037495	XRN1	99	97.590	Colobus_angolensis_palliatus
ENSTTRG00000012914	XRN1	100	82.674	ENSCGRG00001019411	Xrn1	99	94.277	Cricetulus_griseus_chok1gshd
ENSTTRG00000012914	XRN1	100	82.674	ENSCGRG00000012464	Xrn1	99	94.277	Cricetulus_griseus_crigri
ENSTTRG00000012914	XRN1	100	52.803	ENSCSEG00000021285	xrn1	94	87.500	Cynoglossus_semilaevis
ENSTTRG00000012914	XRN1	66	69.489	ENSCVAG00000013089	xrn1	99	69.753	Cyprinodon_variegatus
ENSTTRG00000012914	XRN1	99	59.430	ENSDARG00000091652	xrn1	98	77.004	Danio_rerio
ENSTTRG00000012914	XRN1	100	82.441	ENSDORG00000013833	Xrn1	100	82.441	Dipodomys_ordii
ENSTTRG00000012914	XRN1	74	38.336	FBgn0020261	pcm	72	39.362	Drosophila_melanogaster
ENSTTRG00000012914	XRN1	90	100.000	ENSETEG00000003978	XRN1	92	99.194	Echinops_telfairi
ENSTTRG00000012914	XRN1	100	89.162	ENSEASG00005002687	XRN1	99	96.988	Equus_asinus_asinus
ENSTTRG00000012914	XRN1	100	89.162	ENSECAG00000008301	XRN1	100	89.397	Equus_caballus
ENSTTRG00000012914	XRN1	92	80.841	ENSEEUG00000011323	XRN1	92	80.841	Erinaceus_europaeus
ENSTTRG00000012914	XRN1	100	58.117	ENSELUG00000000169	xrn1	100	57.850	Esox_lucius
ENSTTRG00000012914	XRN1	100	86.995	ENSFCAG00000027589	XRN1	99	92.747	Felis_catus
ENSTTRG00000012914	XRN1	100	70.290	ENSFALG00000007021	XRN1	100	69.900	Ficedula_albicollis
ENSTTRG00000012914	XRN1	100	83.333	ENSFDAG00000020494	XRN1	99	94.880	Fukomys_damarensis
ENSTTRG00000012914	XRN1	82	65.690	ENSGMOG00000006396	xrn1	81	65.105	Gadus_morhua
ENSTTRG00000012914	XRN1	100	70.615	ENSGALG00000002706	XRN1	100	70.223	Gallus_gallus
ENSTTRG00000012914	XRN1	100	56.225	ENSGACG00000014328	xrn1	100	56.419	Gasterosteus_aculeatus
ENSTTRG00000012914	XRN1	95	73.744	ENSGAGG00000017535	XRN1	99	73.445	Gopherus_agassizii
ENSTTRG00000012914	XRN1	100	88.928	ENSGGOG00000008047	XRN1	100	88.928	Gorilla_gorilla
ENSTTRG00000012914	XRN1	100	56.676	ENSHBUG00000005908	xrn1	98	70.697	Haplochromis_burtoni
ENSTTRG00000012914	XRN1	100	84.144	ENSHGLG00000014476	XRN1	99	95.181	Heterocephalus_glaber_female
ENSTTRG00000012914	XRN1	100	84.144	ENSHGLG00100015130	XRN1	99	95.181	Heterocephalus_glaber_male
ENSTTRG00000012914	XRN1	84	69.082	ENSHCOG00000014062	xrn1	92	67.656	Hippocampus_comes
ENSTTRG00000012914	XRN1	96	63.431	ENSIPUG00000015229	xrn1	99	58.405	Ictalurus_punctatus
ENSTTRG00000012914	XRN1	100	86.017	ENSSTOG00000013552	XRN1	99	96.988	Ictidomys_tridecemlineatus
ENSTTRG00000012914	XRN1	98	81.570	ENSJJAG00000010863	Xrn1	99	93.675	Jaculus_jaculus
ENSTTRG00000012914	XRN1	94	57.904	ENSKMAG00000021356	xrn1	94	72.537	Kryptolebias_marmoratus
ENSTTRG00000012914	XRN1	100	56.835	ENSLBEG00000018656	xrn1	97	88.350	Labrus_bergylta
ENSTTRG00000012914	XRN1	100	65.513	ENSLACG00000009020	XRN1	100	65.249	Latimeria_chalumnae
ENSTTRG00000012914	XRN1	100	61.442	ENSLOCG00000007944	xrn1	100	61.121	Lepisosteus_oculatus
ENSTTRG00000012914	XRN1	63	93.732	ENSLAFG00000015426	XRN1	100	93.732	Loxodonta_africana
ENSTTRG00000012914	XRN1	100	89.104	ENSMFAG00000032599	XRN1	100	89.338	Macaca_fascicularis
ENSTTRG00000012914	XRN1	100	89.045	ENSMMUG00000014038	XRN1	100	89.279	Macaca_mulatta
ENSTTRG00000012914	XRN1	100	88.869	ENSMNEG00000034217	XRN1	100	89.104	Macaca_nemestrina
ENSTTRG00000012914	XRN1	94	68.322	ENSMAMG00000013219	xrn1	94	74.385	Mastacembelus_armatus
ENSTTRG00000012914	XRN1	100	57.038	ENSMZEG00005015099	xrn1	99	57.345	Maylandia_zebra
ENSTTRG00000012914	XRN1	99	70.711	ENSMGAG00000006333	XRN1	99	70.306	Meleagris_gallopavo
ENSTTRG00000012914	XRN1	100	88.772	ENSMICG00000048948	XRN1	100	89.006	Microcebus_murinus
ENSTTRG00000012914	XRN1	57	93.072	ENSMOCG00000008665	Xrn1	99	93.072	Microtus_ochrogaster
ENSTTRG00000012914	XRN1	100	78.621	ENSMODG00000021236	XRN1	100	78.563	Monodelphis_domestica
ENSTTRG00000012914	XRN1	95	58.662	ENSMALG00000004098	xrn1	100	54.083	Monopterus_albus
ENSTTRG00000012914	XRN1	96	91.153	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSTTRG00000012914	XRN1	100	81.641	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSTTRG00000012914	XRN1	100	81.698	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSTTRG00000012914	XRN1	100	81.698	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSTTRG00000012914	XRN1	100	90.158	ENSMPUG00000012040	XRN1	100	90.393	Mustela_putorius_furo
ENSTTRG00000012914	XRN1	100	85.321	ENSMLUG00000016885	XRN1	100	85.321	Myotis_lucifugus
ENSTTRG00000012914	XRN1	57	94.880	ENSNGAG00000023964	Xrn1	99	94.880	Nannospalax_galili
ENSTTRG00000012914	XRN1	100	88.511	ENSNLEG00000004726	XRN1	100	88.746	Nomascus_leucogenys
ENSTTRG00000012914	XRN1	70	96.000	ENSMEUG00000014473	-	70	96.000	Notamacropus_eugenii
ENSTTRG00000012914	XRN1	79	81.340	ENSOPRG00000007337	-	79	81.340	Ochotona_princeps
ENSTTRG00000012914	XRN1	100	57.817	ENSONIG00000016673	xrn1	97	62.732	Oreochromis_niloticus
ENSTTRG00000012914	XRN1	92	73.910	ENSOANG00000006735	XRN1	100	73.847	Ornithorhynchus_anatinus
ENSTTRG00000012914	XRN1	100	85.542	ENSOCUG00000001861	XRN1	100	85.542	Oryctolagus_cuniculus
ENSTTRG00000012914	XRN1	100	57.755	ENSORLG00000013005	xrn1	97	62.583	Oryzias_latipes
ENSTTRG00000012914	XRN1	100	57.797	ENSORLG00020005559	xrn1	96	63.722	Oryzias_latipes_hni
ENSTTRG00000012914	XRN1	100	57.425	ENSORLG00015022523	xrn1	100	57.384	Oryzias_latipes_hsok
ENSTTRG00000012914	XRN1	95	70.512	ENSOMEG00000015397	xrn1	100	70.593	Oryzias_melastigma
ENSTTRG00000012914	XRN1	100	86.460	ENSOGAG00000000170	XRN1	100	86.460	Otolemur_garnettii
ENSTTRG00000012914	XRN1	99	91.774	ENSOARG00000006343	XRN1	99	91.774	Ovis_aries
ENSTTRG00000012914	XRN1	100	88.811	ENSPPAG00000010180	XRN1	100	88.811	Pan_paniscus
ENSTTRG00000012914	XRN1	100	89.696	ENSPPRG00000007125	XRN1	100	89.930	Panthera_pardus
ENSTTRG00000012914	XRN1	100	89.696	ENSPTIG00000021081	XRN1	100	89.930	Panthera_tigris_altaica
ENSTTRG00000012914	XRN1	100	88.869	ENSPTRG00000015482	XRN1	100	88.869	Pan_troglodytes
ENSTTRG00000012914	XRN1	100	89.162	ENSPANG00000010638	XRN1	100	89.162	Papio_anubis
ENSTTRG00000012914	XRN1	100	72.789	ENSPSIG00000018050	XRN1	100	72.676	Pelodiscus_sinensis
ENSTTRG00000012914	XRN1	57	74.725	ENSPMGG00000002648	xrn1	98	74.882	Periophthalmus_magnuspinnatus
ENSTTRG00000012914	XRN1	57	92.771	ENSPEMG00000020610	Xrn1	99	92.771	Peromyscus_maniculatus_bairdii
ENSTTRG00000012914	XRN1	62	75.793	ENSPMAG00000002975	xrn1	91	75.793	Petromyzon_marinus
ENSTTRG00000012914	XRN1	100	78.005	ENSPCIG00000028735	XRN1	99	86.661	Phascolarctos_cinereus
ENSTTRG00000012914	XRN1	90	61.218	ENSPFOG00000013932	xrn1	94	63.331	Poecilia_formosa
ENSTTRG00000012914	XRN1	90	60.266	ENSPLAG00000021653	xrn1	94	62.724	Poecilia_latipinna
ENSTTRG00000012914	XRN1	86	62.442	ENSPMEG00000003076	xrn1	92	62.599	Poecilia_mexicana
ENSTTRG00000012914	XRN1	100	57.555	ENSPREG00000021147	xrn1	100	57.919	Poecilia_reticulata
ENSTTRG00000012914	XRN1	100	88.804	ENSPPYG00000014172	XRN1	100	88.804	Pongo_abelii
ENSTTRG00000012914	XRN1	86	82.455	ENSPCAG00000005638	XRN1	95	82.455	Procavia_capensis
ENSTTRG00000012914	XRN1	100	88.811	ENSPCOG00000013089	XRN1	99	97.289	Propithecus_coquereli
ENSTTRG00000012914	XRN1	92	89.592	ENSPVAG00000016265	XRN1	92	89.592	Pteropus_vampyrus
ENSTTRG00000012914	XRN1	100	56.891	ENSPNYG00000010570	xrn1	99	57.119	Pundamilia_nyererei
ENSTTRG00000012914	XRN1	99	56.716	ENSPNAG00000023531	xrn1	99	56.562	Pygocentrus_nattereri
ENSTTRG00000012914	XRN1	100	82.444	ENSRNOG00000042951	Xrn1	100	82.444	Rattus_norvegicus
ENSTTRG00000012914	XRN1	100	88.459	ENSRBIG00000041227	XRN1	100	88.694	Rhinopithecus_bieti
ENSTTRG00000012914	XRN1	67	53.406	YGL173C	XRN1	73	53.406	Saccharomyces_cerevisiae
ENSTTRG00000012914	XRN1	100	88.394	ENSSBOG00000029561	XRN1	100	88.394	Saimiri_boliviensis_boliviensis
ENSTTRG00000012914	XRN1	99	78.508	ENSSHAG00000016207	XRN1	100	78.390	Sarcophilus_harrisii
ENSTTRG00000012914	XRN1	100	58.076	ENSSFOG00015024211	xrn1	100	57.985	Scleropages_formosus
ENSTTRG00000012914	XRN1	93	69.790	ENSSMAG00000016534	xrn1	96	69.709	Scophthalmus_maximus
ENSTTRG00000012914	XRN1	90	70.220	ENSSDUG00000010306	xrn1	77	70.220	Seriola_dumerili
ENSTTRG00000012914	XRN1	94	69.745	ENSSLDG00000021543	xrn1	99	69.745	Seriola_lalandi_dorsalis
ENSTTRG00000012914	XRN1	67	83.781	ENSSARG00000007741	-	83	83.781	Sorex_araneus
ENSTTRG00000012914	XRN1	100	73.186	ENSTGUG00000008498	XRN1	100	72.896	Taeniopygia_guttata
ENSTTRG00000012914	XRN1	86	60.872	ENSTRUG00000004895	xrn1	96	74.113	Takifugu_rubripes
ENSTTRG00000012914	XRN1	100	55.530	ENSTNIG00000017615	xrn1	100	55.435	Tetraodon_nigroviridis
ENSTTRG00000012914	XRN1	82	93.258	ENSTBEG00000003256	XRN1	82	93.258	Tupaia_belangeri
ENSTTRG00000012914	XRN1	100	89.461	ENSUAMG00000001608	XRN1	99	98.494	Ursus_americanus
ENSTTRG00000012914	XRN1	100	91.628	ENSUMAG00000013625	XRN1	100	91.628	Ursus_maritimus
ENSTTRG00000012914	XRN1	100	90.082	ENSVPAG00000004690	XRN1	100	90.317	Vicugna_pacos
ENSTTRG00000012914	XRN1	100	91.037	ENSVVUG00000024461	XRN1	99	98.494	Vulpes_vulpes
ENSTTRG00000012914	XRN1	100	65.988	ENSXETG00000000619	xrn1	97	84.140	Xenopus_tropicalis
ENSTTRG00000012914	XRN1	100	57.421	ENSXCOG00000007917	xrn1	100	57.265	Xiphophorus_couchianus
ENSTTRG00000012914	XRN1	93	69.519	ENSXMAG00000018320	xrn1	98	69.519	Xiphophorus_maculatus