EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTTRG00000013933 (Gene tree)
Gene ID: -
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Minus strand
Length: 135527 bases
Position: chrGeneScaffold_2254:1207-136733
Accession: 101322798
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000013230	ResIII	PF04851.15	7.2e-11	1	1
ENSTTRP00000013230	DEAD	PF00270.29	2.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000013951	HFM1-201	4236	XM_019919144	ENSTTRP00000013230	1411 (aa)	XP_019774703	UPI00018B64FD

Gene Model

Click here to download ENSTTRG00000013933's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000013933's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTTRG00000013933	HFM1	59	31.127	ENSTTRG00000004983	SNRNP200	75	31.127

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000013933	HFM1	100	82.639	ENSG00000162669	HFM1	100	82.639	Homo_sapiens
ENSTTRG00000013933	HFM1	59	66.029	ENSAPOG00000005304	hfm1	94	66.029	Acanthochromis_polyacanthus
ENSTTRG00000013933	HFM1	100	83.056	ENSAMEG00000000432	HFM1	100	83.056	Ailuropoda_melanoleuca
ENSTTRG00000013933	HFM1	72	60.194	ENSACIG00000021553	hfm1	92	60.194	Amphilophus_citrinellus
ENSTTRG00000013933	HFM1	59	66.427	ENSAOCG00000022839	hfm1	96	68.979	Amphiprion_ocellaris
ENSTTRG00000013933	HFM1	59	66.187	ENSAPEG00000014316	hfm1	96	69.027	Amphiprion_percula
ENSTTRG00000013933	HFM1	67	63.843	ENSATEG00000019181	hfm1	80	62.842	Anabas_testudineus
ENSTTRG00000013933	HFM1	91	63.853	ENSAPLG00000013639	HFM1	90	63.853	Anas_platyrhynchos
ENSTTRG00000013933	HFM1	100	79.652	ENSANAG00000029513	HFM1	100	79.652	Aotus_nancymaae
ENSTTRG00000013933	HFM1	71	59.980	ENSACLG00000009033	hfm1	97	64.362	Astatotilapia_calliptera
ENSTTRG00000013933	HFM1	67	65.128	ENSAMXG00000006108	hfm1	67	65.128	Astyanax_mexicanus
ENSTTRG00000013933	HFM1	100	84.006	ENSBTAG00000020856	HFM1	100	84.006	Bos_taurus
ENSTTRG00000013933	HFM1	100	80.208	ENSCJAG00000001843	HFM1	100	80.208	Callithrix_jacchus
ENSTTRG00000013933	HFM1	100	82.361	ENSCAFG00000020187	HFM1	100	82.361	Canis_familiaris
ENSTTRG00000013933	HFM1	100	80.083	ENSTSYG00000014250	HFM1	100	80.083	Carlito_syrichta
ENSTTRG00000013933	HFM1	99	77.053	ENSCPOG00000007421	HFM1	99	77.053	Cavia_porcellus
ENSTTRG00000013933	HFM1	100	80.139	ENSCCAG00000033206	HFM1	100	80.139	Cebus_capucinus
ENSTTRG00000013933	HFM1	100	81.250	ENSCATG00000030987	HFM1	100	81.250	Cercocebus_atys
ENSTTRG00000013933	HFM1	100	75.946	ENSCLAG00000005173	HFM1	99	75.946	Chinchilla_lanigera
ENSTTRG00000013933	HFM1	55	94.737	ENSCHOG00000011824	-	62	94.737	Choloepus_hoffmanni
ENSTTRG00000013933	HFM1	100	69.800	ENSCGRG00001016995	Hfm1	100	69.800	Cricetulus_griseus_chok1gshd
ENSTTRG00000013933	HFM1	100	73.940	ENSCGRG00000017181	Hfm1	100	73.940	Cricetulus_griseus_crigri
ENSTTRG00000013933	HFM1	72	59.637	ENSCSEG00000017659	hfm1	94	59.637	Cynoglossus_semilaevis
ENSTTRG00000013933	HFM1	50	68.399	ENSCVAG00000005075	hfm1	86	68.399	Cyprinodon_variegatus
ENSTTRG00000013933	HFM1	61	66.084	ENSDARG00000104288	hfm1	77	66.084	Danio_rerio
ENSTTRG00000013933	HFM1	100	75.758	ENSDNOG00000004776	HFM1	100	75.758	Dasypus_novemcinctus
ENSTTRG00000013933	HFM1	100	73.558	ENSDORG00000014661	Hfm1	100	73.558	Dipodomys_ordii
ENSTTRG00000013933	HFM1	71	87.017	ENSEASG00005015424	HFM1	97	87.017	Equus_asinus_asinus
ENSTTRG00000013933	HFM1	100	81.414	ENSECAG00000024039	HFM1	100	81.414	Equus_caballus
ENSTTRG00000013933	HFM1	64	67.143	ENSELUG00000018944	hfm1	97	67.143	Esox_lucius
ENSTTRG00000013933	HFM1	100	83.206	ENSFCAG00000029116	HFM1	100	83.206	Felis_catus
ENSTTRG00000013933	HFM1	91	62.855	ENSFALG00000001781	HFM1	90	63.341	Ficedula_albicollis
ENSTTRG00000013933	HFM1	100	73.790	ENSFDAG00000020816	HFM1	100	73.790	Fukomys_damarensis
ENSTTRG00000013933	HFM1	67	60.625	ENSGMOG00000017436	hfm1	99	60.625	Gadus_morhua
ENSTTRG00000013933	HFM1	72	60.773	ENSGAFG00000018093	hfm1	93	66.067	Gambusia_affinis
ENSTTRG00000013933	HFM1	67	61.994	ENSGACG00000015686	hfm1	100	61.994	Gasterosteus_aculeatus
ENSTTRG00000013933	HFM1	100	82.292	ENSGGOG00000038524	HFM1	100	82.292	Gorilla_gorilla
ENSTTRG00000013933	HFM1	71	60.870	ENSHBUG00000007309	hfm1	96	60.366	Haplochromis_burtoni
ENSTTRG00000013933	HFM1	58	64.216	ENSHCOG00000019632	hfm1	97	64.216	Hippocampus_comes
ENSTTRG00000013933	HFM1	66	64.537	ENSIPUG00000017020	hfm1	92	65.874	Ictalurus_punctatus
ENSTTRG00000013933	HFM1	100	74.061	ENSJJAG00000017198	Hfm1	100	74.061	Jaculus_jaculus
ENSTTRG00000013933	HFM1	63	62.775	ENSKMAG00000002282	hfm1	91	62.775	Kryptolebias_marmoratus
ENSTTRG00000013933	HFM1	72	59.785	ENSLBEG00000006759	hfm1	97	65.212	Labrus_bergylta
ENSTTRG00000013933	HFM1	67	70.145	ENSLACG00000010698	HFM1	100	66.415	Latimeria_chalumnae
ENSTTRG00000013933	HFM1	73	63.862	ENSLOCG00000004931	hfm1	96	63.958	Lepisosteus_oculatus
ENSTTRG00000013933	HFM1	53	89.771	ENSLAFG00000015903	-	99	89.771	Loxodonta_africana
ENSTTRG00000013933	HFM1	100	78.360	ENSMFAG00000003649	HFM1	100	78.360	Macaca_fascicularis
ENSTTRG00000013933	HFM1	100	81.042	ENSMMUG00000006819	HFM1	100	81.042	Macaca_mulatta
ENSTTRG00000013933	HFM1	55	70.090	ENSMAMG00000004623	hfm1	99	65.914	Mastacembelus_armatus
ENSTTRG00000013933	HFM1	71	59.980	ENSMZEG00005004679	hfm1	97	64.362	Maylandia_zebra
ENSTTRG00000013933	HFM1	55	77.261	ENSMGAG00000008437	HFM1	96	77.261	Meleagris_gallopavo
ENSTTRG00000013933	HFM1	100	74.167	ENSMAUG00000018858	Hfm1	100	74.167	Mesocricetus_auratus
ENSTTRG00000013933	HFM1	100	81.111	ENSMICG00000037935	HFM1	100	81.111	Microcebus_murinus
ENSTTRG00000013933	HFM1	100	72.272	ENSMOCG00000014812	Hfm1	100	72.272	Microtus_ochrogaster
ENSTTRG00000013933	HFM1	63	63.626	ENSMMOG00000006148	hfm1	96	64.426	Mola_mola
ENSTTRG00000013933	HFM1	66	64.194	ENSMALG00000002401	hfm1	94	66.667	Monopterus_albus
ENSTTRG00000013933	HFM1	94	69.251	MGP_CAROLIEiJ_G0027496	Hfm1	100	69.251	Mus_caroli
ENSTTRG00000013933	HFM1	100	73.296	ENSMUSG00000043410	Hfm1	100	73.296	Mus_musculus
ENSTTRG00000013933	HFM1	100	72.949	MGP_PahariEiJ_G0017268	Hfm1	100	72.949	Mus_pahari
ENSTTRG00000013933	HFM1	100	73.018	MGP_SPRETEiJ_G0028495	Hfm1	100	73.018	Mus_spretus
ENSTTRG00000013933	HFM1	100	79.744	ENSMPUG00000004594	HFM1	100	79.744	Mustela_putorius_furo
ENSTTRG00000013933	HFM1	100	80.652	ENSMLUG00000010200	HFM1	100	80.652	Myotis_lucifugus
ENSTTRG00000013933	HFM1	71	56.932	ENSNBRG00000002910	hfm1	97	64.727	Neolamprologus_brichardi
ENSTTRG00000013933	HFM1	100	78.086	ENSNLEG00000010285	HFM1	100	78.086	Nomascus_leucogenys
ENSTTRG00000013933	HFM1	85	66.667	ENSMEUG00000015788	HFM1	84	66.667	Notamacropus_eugenii
ENSTTRG00000013933	HFM1	84	76.319	ENSOPRG00000013916	HFM1	84	76.319	Ochotona_princeps
ENSTTRG00000013933	HFM1	72	61.315	ENSONIG00000010590	hfm1	99	61.185	Oreochromis_niloticus
ENSTTRG00000013933	HFM1	57	65.068	ENSORLG00000026844	hfm1	99	65.068	Oryzias_latipes
ENSTTRG00000013933	HFM1	68	56.332	ENSORLG00020002951	hfm1	76	56.893	Oryzias_latipes_hni
ENSTTRG00000013933	HFM1	73	58.103	ENSOMEG00000016474	hfm1	68	61.866	Oryzias_melastigma
ENSTTRG00000013933	HFM1	87	85.528	ENSOGAG00000032369	HFM1	100	85.528	Otolemur_garnettii
ENSTTRG00000013933	HFM1	100	84.519	ENSOARG00000015812	HFM1	100	84.519	Ovis_aries
ENSTTRG00000013933	HFM1	91	87.760	ENSPPAG00000024582	HFM1	98	87.760	Pan_paniscus
ENSTTRG00000013933	HFM1	100	83.414	ENSPPRG00000003270	HFM1	100	83.414	Panthera_pardus
ENSTTRG00000013933	HFM1	100	83.276	ENSPTIG00000018881	HFM1	100	83.276	Panthera_tigris_altaica
ENSTTRG00000013933	HFM1	100	82.639	ENSPTRG00000000948	HFM1	100	82.639	Pan_troglodytes
ENSTTRG00000013933	HFM1	100	81.181	ENSPANG00000009838	HFM1	100	81.181	Papio_anubis
ENSTTRG00000013933	HFM1	63	67.607	ENSPKIG00000003810	hfm1	95	67.836	Paramormyrops_kingsleyae
ENSTTRG00000013933	HFM1	58	65.780	ENSPMGG00000011059	hfm1	100	65.780	Periophthalmus_magnuspinnatus
ENSTTRG00000013933	HFM1	100	75.382	ENSPEMG00000022852	Hfm1	100	75.382	Peromyscus_maniculatus_bairdii
ENSTTRG00000013933	HFM1	100	64.943	ENSPCIG00000014233	HFM1	100	64.943	Phascolarctos_cinereus
ENSTTRG00000013933	HFM1	72	61.190	ENSPFOG00000017194	hfm1	100	61.568	Poecilia_formosa
ENSTTRG00000013933	HFM1	72	62.512	ENSPLAG00000000571	hfm1	92	62.512	Poecilia_latipinna
ENSTTRG00000013933	HFM1	72	63.060	ENSPMEG00000019475	hfm1	93	63.060	Poecilia_mexicana
ENSTTRG00000013933	HFM1	72	62.353	ENSPREG00000007803	hfm1	94	65.233	Poecilia_reticulata
ENSTTRG00000013933	HFM1	100	82.083	ENSPPYG00000001163	HFM1	100	82.083	Pongo_abelii
ENSTTRG00000013933	HFM1	63	79.372	ENSPCAG00000004289	-	63	79.372	Procavia_capensis
ENSTTRG00000013933	HFM1	100	74.583	ENSPVAG00000009713	HFM1	100	74.583	Pteropus_vampyrus
ENSTTRG00000013933	HFM1	71	59.881	ENSPNYG00000001795	hfm1	97	64.362	Pundamilia_nyererei
ENSTTRG00000013933	HFM1	61	66.589	ENSPNAG00000010865	hfm1	85	66.589	Pygocentrus_nattereri
ENSTTRG00000013933	HFM1	100	72.114	ENSRNOG00000023299	Hfm1	100	72.114	Rattus_norvegicus
ENSTTRG00000013933	HFM1	100	81.319	ENSRROG00000045569	HFM1	100	81.319	Rhinopithecus_roxellana
ENSTTRG00000013933	HFM1	100	77.939	ENSSBOG00000027456	HFM1	100	77.939	Saimiri_boliviensis_boliviensis
ENSTTRG00000013933	HFM1	61	70.439	ENSSHAG00000014616	-	98	70.439	Sarcophilus_harrisii
ENSTTRG00000013933	HFM1	86	56.584	ENSSFOG00015020129	hfm1	91	52.920	Scleropages_formosus
ENSTTRG00000013933	HFM1	63	65.208	ENSSMAG00000006907	hfm1	87	65.208	Scophthalmus_maximus
ENSTTRG00000013933	HFM1	58	66.264	ENSSDUG00000011424	hfm1	93	66.264	Seriola_dumerili
ENSTTRG00000013933	HFM1	61	64.808	ENSSLDG00000016386	hfm1	96	64.808	Seriola_lalandi_dorsalis
ENSTTRG00000013933	HFM1	69	59.169	ENSSPAG00000001023	hfm1	95	65.917	Stegastes_partitus
ENSTTRG00000013933	HFM1	100	81.554	ENSSSCG00000006912	HFM1	98	86.482	Sus_scrofa
ENSTTRG00000013933	HFM1	67	74.817	ENSTGUG00000006172	HFM1	100	74.817	Taeniopygia_guttata
ENSTTRG00000013933	HFM1	93	85.246	ENSVPAG00000011331	HFM1	93	85.246	Vicugna_pacos
ENSTTRG00000013933	HFM1	71	84.323	ENSVVUG00000020760	HFM1	99	84.323	Vulpes_vulpes
ENSTTRG00000013933	HFM1	58	66.626	ENSXMAG00000004178	hfm1	92	66.626	Xiphophorus_maculatus