EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTTRG00000015414 (Gene tree)
Gene ID: -
Gene Symbol: UPF3A
Alias: HUPF3A|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Plus strand
Length: 23995 bases
Position: chrGeneScaffold_2566:9739-33733
Accession: 20332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000014608	Smg4_UPF3	PF03467.15	6.6e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000015413	UPF3A-201	1434	-	ENSTTRP00000014608	477 (aa)	-	UPI00018B5476

Gene Model

Click here to download ENSTTRG00000015414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000015414's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTTRG00000015414	UPF3A	73	32.718	ENSTTRG00000011424	-	75	33.773

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000015414	UPF3A	100	65.063	ENSG00000169062	UPF3A	100	65.063	Homo_sapiens
ENSTTRG00000015414	UPF3A	73	41.370	ENSAMEG00000000163	UPF3B	75	48.108	Ailuropoda_melanoleuca
ENSTTRG00000015414	UPF3A	93	67.253	ENSAMEG00000004259	UPF3A	99	67.253	Ailuropoda_melanoleuca
ENSTTRG00000015414	UPF3A	78	53.968	ENSATEG00000005843	upf3a	78	53.968	Anabas_testudineus
ENSTTRG00000015414	UPF3A	77	63.089	ENSACAG00000001540	UPF3A	91	63.089	Anolis_carolinensis
ENSTTRG00000015414	UPF3A	78	38.046	ENSACAG00000003625	UPF3B	81	39.426	Anolis_carolinensis
ENSTTRG00000015414	UPF3A	73	39.335	ENSANAG00000025598	-	74	38.781	Aotus_nancymaae
ENSTTRG00000015414	UPF3A	100	63.598	ENSANAG00000021713	UPF3A	100	63.598	Aotus_nancymaae
ENSTTRG00000015414	UPF3A	73	40.220	ENSANAG00000021894	-	75	47.297	Aotus_nancymaae
ENSTTRG00000015414	UPF3A	73	52.861	ENSACLG00000026274	upf3a	73	52.861	Astatotilapia_calliptera
ENSTTRG00000015414	UPF3A	74	56.215	ENSAMXG00000002608	upf3a	75	56.215	Astyanax_mexicanus
ENSTTRG00000015414	UPF3A	73	39.945	ENSCJAG00000004975	UPF3B	75	47.027	Callithrix_jacchus
ENSTTRG00000015414	UPF3A	100	65.063	ENSCJAG00000019102	UPF3A	100	65.063	Callithrix_jacchus
ENSTTRG00000015414	UPF3A	95	66.228	ENSCAFG00000006504	UPF3A	98	66.228	Canis_familiaris
ENSTTRG00000015414	UPF3A	73	41.370	ENSCAFG00000018426	UPF3B	77	47.297	Canis_familiaris
ENSTTRG00000015414	UPF3A	97	65.678	ENSCAFG00020014268	UPF3A	99	65.678	Canis_lupus_dingo
ENSTTRG00000015414	UPF3A	73	41.551	ENSCAFG00020004074	UPF3B	52	79.310	Canis_lupus_dingo
ENSTTRG00000015414	UPF3A	96	69.130	ENSCHIG00000008682	UPF3A	94	68.697	Capra_hircus
ENSTTRG00000015414	UPF3A	65	35.577	ENSCHIG00000011454	-	69	33.654	Capra_hircus
ENSTTRG00000015414	UPF3A	73	40.556	ENSTSYG00000014690	UPF3B	77	45.690	Carlito_syrichta
ENSTTRG00000015414	UPF3A	77	62.698	ENSTSYG00000001918	UPF3A	100	62.698	Carlito_syrichta
ENSTTRG00000015414	UPF3A	93	54.607	ENSCPOG00000006824	UPF3A	99	54.607	Cavia_porcellus
ENSTTRG00000015414	UPF3A	100	65.690	ENSCCAG00000018406	UPF3A	100	65.690	Cebus_capucinus
ENSTTRG00000015414	UPF3A	100	64.226	ENSCATG00000029733	UPF3A	100	64.226	Cercocebus_atys
ENSTTRG00000015414	UPF3A	100	63.410	ENSCSAG00000017388	UPF3A	100	63.410	Chlorocebus_sabaeus
ENSTTRG00000015414	UPF3A	82	49.600	ENSCHOG00000006918	-	86	50.993	Choloepus_hoffmanni
ENSTTRG00000015414	UPF3A	91	58.716	ENSCGRG00001017387	Upf3a	99	58.716	Cricetulus_griseus_chok1gshd
ENSTTRG00000015414	UPF3A	90	58.701	ENSCGRG00000001468	Upf3a	99	58.701	Cricetulus_griseus_crigri
ENSTTRG00000015414	UPF3A	76	39.788	ENSCGRG00000007627	Upf3b	89	39.896	Cricetulus_griseus_crigri
ENSTTRG00000015414	UPF3A	83	50.500	ENSCSEG00000005106	upf3a	73	55.874	Cynoglossus_semilaevis
ENSTTRG00000015414	UPF3A	74	55.085	ENSCVAG00000022333	upf3a	73	55.085	Cyprinodon_variegatus
ENSTTRG00000015414	UPF3A	74	54.674	ENSDARG00000069297	upf3a	75	54.674	Danio_rerio
ENSTTRG00000015414	UPF3A	85	66.265	ENSDNOG00000034391	UPF3A	98	65.517	Dasypus_novemcinctus
ENSTTRG00000015414	UPF3A	73	40.872	ENSDORG00000006077	Upf3b	75	41.779	Dipodomys_ordii
ENSTTRG00000015414	UPF3A	70	67.656	ENSETEG00000010110	UPF3A	85	67.656	Echinops_telfairi
ENSTTRG00000015414	UPF3A	73	42.618	ENSEASG00005012919	UPF3B	75	43.094	Equus_asinus_asinus
ENSTTRG00000015414	UPF3A	100	67.010	ENSEASG00005021884	UPF3A	100	67.010	Equus_asinus_asinus
ENSTTRG00000015414	UPF3A	100	66.186	ENSECAG00000017141	UPF3A	100	66.186	Equus_caballus
ENSTTRG00000015414	UPF3A	73	42.618	ENSECAG00000016947	UPF3B	75	43.094	Equus_caballus
ENSTTRG00000015414	UPF3A	77	53.867	ENSELUG00000011050	upf3a	78	53.867	Esox_lucius
ENSTTRG00000015414	UPF3A	99	68.201	ENSFCAG00000014602	UPF3A	99	68.201	Felis_catus
ENSTTRG00000015414	UPF3A	75	39.946	ENSFDAG00000018869	UPF3B	75	47.297	Fukomys_damarensis
ENSTTRG00000015414	UPF3A	62	57.096	ENSGMOG00000019615	upf3a	89	57.096	Gadus_morhua
ENSTTRG00000015414	UPF3A	74	55.056	ENSGAFG00000021170	upf3a	73	55.493	Gambusia_affinis
ENSTTRG00000015414	UPF3A	62	55.405	ENSGACG00000001972	upf3a	88	56.419	Gasterosteus_aculeatus
ENSTTRG00000015414	UPF3A	78	62.198	ENSGGOG00000043074	-	77	62.735	Gorilla_gorilla
ENSTTRG00000015414	UPF3A	78	62.198	ENSGGOG00000041219	-	82	62.735	Gorilla_gorilla
ENSTTRG00000015414	UPF3A	100	65.272	ENSGGOG00000015428	UPF3A	100	65.272	Gorilla_gorilla
ENSTTRG00000015414	UPF3A	73	55.587	ENSHBUG00000011325	upf3a	72	55.587	Haplochromis_burtoni
ENSTTRG00000015414	UPF3A	73	39.889	ENSHGLG00000019582	-	75	47.297	Heterocephalus_glaber_female
ENSTTRG00000015414	UPF3A	87	56.386	ENSHGLG00000001544	UPF3A	95	56.386	Heterocephalus_glaber_female
ENSTTRG00000015414	UPF3A	73	39.437	ENSHGLG00100002042	-	74	46.348	Heterocephalus_glaber_male
ENSTTRG00000015414	UPF3A	87	56.386	ENSHGLG00100013244	UPF3A	95	56.386	Heterocephalus_glaber_male
ENSTTRG00000015414	UPF3A	73	43.316	ENSHCOG00000017004	upf3b	78	44.118	Hippocampus_comes
ENSTTRG00000015414	UPF3A	73	48.415	ENSHCOG00000013985	upf3a	51	75.000	Hippocampus_comes
ENSTTRG00000015414	UPF3A	74	56.022	ENSIPUG00000023450	upf3a	75	56.022	Ictalurus_punctatus
ENSTTRG00000015414	UPF3A	73	41.322	ENSSTOG00000001101	UPF3B	75	47.956	Ictidomys_tridecemlineatus
ENSTTRG00000015414	UPF3A	73	56.000	ENSKMAG00000004381	upf3a	72	55.714	Kryptolebias_marmoratus
ENSTTRG00000015414	UPF3A	63	44.277	ENSLACG00000006645	UPF3A	100	40.599	Latimeria_chalumnae
ENSTTRG00000015414	UPF3A	78	56.649	ENSLOCG00000002665	upf3a	80	56.649	Lepisosteus_oculatus
ENSTTRG00000015414	UPF3A	73	39.286	ENSLAFG00000001267	UPF3B	75	46.757	Loxodonta_africana
ENSTTRG00000015414	UPF3A	75	59.788	ENSLAFG00000023358	UPF3A	91	58.205	Loxodonta_africana
ENSTTRG00000015414	UPF3A	100	59.836	ENSMFAG00000045016	UPF3A	100	59.836	Macaca_fascicularis
ENSTTRG00000015414	UPF3A	100	61.506	ENSMMUG00000007449	UPF3A	100	61.506	Macaca_mulatta
ENSTTRG00000015414	UPF3A	99	59.100	ENSMNEG00000036402	UPF3A	100	59.100	Macaca_nemestrina
ENSTTRG00000015414	UPF3A	78	70.509	ENSMLEG00000014726	UPF3A	85	70.509	Mandrillus_leucophaeus
ENSTTRG00000015414	UPF3A	78	52.030	ENSMAMG00000018364	upf3a	73	54.247	Mastacembelus_armatus
ENSTTRG00000015414	UPF3A	73	52.861	ENSMZEG00005021571	upf3a	73	52.861	Maylandia_zebra
ENSTTRG00000015414	UPF3A	78	65.354	ENSMGAG00000014837	UPF3A	95	65.354	Meleagris_gallopavo
ENSTTRG00000015414	UPF3A	73	39.835	ENSMAUG00000008705	Upf3b	75	47.253	Mesocricetus_auratus
ENSTTRG00000015414	UPF3A	76	40.256	ENSMOCG00000017893	Upf3b	78	40.360	Microtus_ochrogaster
ENSTTRG00000015414	UPF3A	66	64.038	ENSMOCG00000000550	Upf3a	88	64.038	Microtus_ochrogaster
ENSTTRG00000015414	UPF3A	73	53.279	ENSMMOG00000019751	upf3a	73	53.279	Mola_mola
ENSTTRG00000015414	UPF3A	78	67.098	ENSMODG00000003159	UPF3A	90	67.098	Monodelphis_domestica
ENSTTRG00000015414	UPF3A	77	42.408	ENSMODG00000010232	UPF3B	86	41.623	Monodelphis_domestica
ENSTTRG00000015414	UPF3A	87	58.473	MGP_CAROLIEiJ_G0030848	Upf3a	99	58.219	Mus_caroli
ENSTTRG00000015414	UPF3A	87	58.654	ENSMUSG00000038398	Upf3a	99	58.621	Mus_musculus
ENSTTRG00000015414	UPF3A	87	58.173	MGP_PahariEiJ_G0021311	Upf3a	99	57.931	Mus_pahari
ENSTTRG00000015414	UPF3A	87	58.413	MGP_SPRETEiJ_G0031958	Upf3a	99	58.161	Mus_spretus
ENSTTRG00000015414	UPF3A	75	40.000	ENSMPUG00000001531	UPF3B	77	47.297	Mustela_putorius_furo
ENSTTRG00000015414	UPF3A	99	66.736	ENSMPUG00000009139	UPF3A	99	66.736	Mustela_putorius_furo
ENSTTRG00000015414	UPF3A	78	73.958	ENSMLUG00000015905	UPF3A	91	73.958	Myotis_lucifugus
ENSTTRG00000015414	UPF3A	91	59.540	ENSNGAG00000019314	Upf3a	99	59.540	Nannospalax_galili
ENSTTRG00000015414	UPF3A	73	55.587	ENSNBRG00000000828	upf3a	72	55.587	Neolamprologus_brichardi
ENSTTRG00000015414	UPF3A	100	64.509	ENSNLEG00000007563	UPF3A	100	64.509	Nomascus_leucogenys
ENSTTRG00000015414	UPF3A	53	65.079	ENSOPRG00000008846	-	58	65.873	Ochotona_princeps
ENSTTRG00000015414	UPF3A	73	54.545	ENSONIG00000006817	upf3a	72	54.701	Oreochromis_niloticus
ENSTTRG00000015414	UPF3A	77	37.879	ENSOANG00000002594	-	87	37.726	Ornithorhynchus_anatinus
ENSTTRG00000015414	UPF3A	68	62.963	ENSOANG00000006985	-	85	62.310	Ornithorhynchus_anatinus
ENSTTRG00000015414	UPF3A	73	38.830	ENSOCUG00000010213	UPF3B	76	45.692	Oryctolagus_cuniculus
ENSTTRG00000015414	UPF3A	78	58.486	ENSOCUG00000008450	UPF3A	93	53.070	Oryctolagus_cuniculus
ENSTTRG00000015414	UPF3A	73	53.390	ENSORLG00000010911	upf3a	72	53.390	Oryzias_latipes
ENSTTRG00000015414	UPF3A	74	36.968	ENSORLG00000001026	upf3b	86	37.203	Oryzias_latipes
ENSTTRG00000015414	UPF3A	74	37.234	ENSORLG00020003758	upf3b	79	37.467	Oryzias_latipes_hni
ENSTTRG00000015414	UPF3A	73	52.571	ENSORLG00020014317	upf3a	72	52.571	Oryzias_latipes_hni
ENSTTRG00000015414	UPF3A	73	37.297	ENSORLG00015012954	upf3b	77	38.108	Oryzias_latipes_hsok
ENSTTRG00000015414	UPF3A	73	53.714	ENSOMEG00000014425	upf3a	72	53.714	Oryzias_melastigma
ENSTTRG00000015414	UPF3A	83	64.987	ENSOGAG00000004788	UPF3A	96	64.987	Otolemur_garnettii
ENSTTRG00000015414	UPF3A	73	38.571	ENSOARG00000007869	-	81	36.286	Ovis_aries
ENSTTRG00000015414	UPF3A	93	69.316	ENSOARG00000009004	UPF3A	98	68.319	Ovis_aries
ENSTTRG00000015414	UPF3A	100	63.598	ENSPPAG00000042267	UPF3A	100	63.598	Pan_paniscus
ENSTTRG00000015414	UPF3A	99	68.410	ENSPPRG00000025062	UPF3A	99	68.410	Panthera_pardus
ENSTTRG00000015414	UPF3A	73	38.692	ENSPPRG00000023536	UPF3B	75	47.297	Panthera_pardus
ENSTTRG00000015414	UPF3A	78	60.054	ENSPTRG00000041187	-	82	60.322	Pan_troglodytes
ENSTTRG00000015414	UPF3A	100	64.226	ENSPTRG00000006073	UPF3A	100	64.226	Pan_troglodytes
ENSTTRG00000015414	UPF3A	78	59.249	ENSPTRG00000041835	-	81	59.249	Pan_troglodytes
ENSTTRG00000015414	UPF3A	78	59.249	ENSPTRG00000051640	-	82	60.054	Pan_troglodytes
ENSTTRG00000015414	UPF3A	100	64.017	ENSPANG00000004346	UPF3A	100	64.017	Papio_anubis
ENSTTRG00000015414	UPF3A	78	51.508	ENSPKIG00000004422	upf3a	87	51.508	Paramormyrops_kingsleyae
ENSTTRG00000015414	UPF3A	76	42.520	ENSPKIG00000019226	upf3b	78	46.216	Paramormyrops_kingsleyae
ENSTTRG00000015414	UPF3A	78	67.287	ENSPSIG00000007468	UPF3A	91	67.287	Pelodiscus_sinensis
ENSTTRG00000015414	UPF3A	78	48.905	ENSPMGG00000012696	upf3a	73	51.872	Periophthalmus_magnuspinnatus
ENSTTRG00000015414	UPF3A	76	40.682	ENSPEMG00000012352	Upf3b	78	41.253	Peromyscus_maniculatus_bairdii
ENSTTRG00000015414	UPF3A	91	59.540	ENSPEMG00000019968	-	99	59.540	Peromyscus_maniculatus_bairdii
ENSTTRG00000015414	UPF3A	78	62.009	ENSPCIG00000019590	-	100	59.055	Phascolarctos_cinereus
ENSTTRG00000015414	UPF3A	77	40.957	ENSPCIG00000028914	UPF3B	77	40.957	Phascolarctos_cinereus
ENSTTRG00000015414	UPF3A	74	55.775	ENSPFOG00000013222	upf3a	73	55.775	Poecilia_formosa
ENSTTRG00000015414	UPF3A	74	55.211	ENSPLAG00000011960	upf3a	75	55.211	Poecilia_latipinna
ENSTTRG00000015414	UPF3A	74	52.533	ENSPMEG00000000836	upf3a	75	52.547	Poecilia_mexicana
ENSTTRG00000015414	UPF3A	100	64.435	ENSPPYG00000005536	UPF3A	100	64.435	Pongo_abelii
ENSTTRG00000015414	UPF3A	64	76.684	ENSPCAG00000013124	UPF3A	64	76.684	Procavia_capensis
ENSTTRG00000015414	UPF3A	73	40.107	ENSPCAG00000009464	UPF3B	76	45.932	Procavia_capensis
ENSTTRG00000015414	UPF3A	73	41.873	ENSPCOG00000021960	UPF3B	75	42.623	Propithecus_coquereli
ENSTTRG00000015414	UPF3A	100	63.180	ENSPVAG00000005656	UPF3A	100	63.180	Pteropus_vampyrus
ENSTTRG00000015414	UPF3A	73	52.861	ENSPNYG00000011289	upf3a	73	52.861	Pundamilia_nyererei
ENSTTRG00000015414	UPF3A	78	55.108	ENSPNAG00000019532	upf3a	78	54.667	Pygocentrus_nattereri
ENSTTRG00000015414	UPF3A	86	60.437	ENSRNOG00000017397	Upf3a	97	60.437	Rattus_norvegicus
ENSTTRG00000015414	UPF3A	78	70.509	ENSRBIG00000034007	UPF3A	96	64.286	Rhinopithecus_bieti
ENSTTRG00000015414	UPF3A	78	71.046	ENSRROG00000012212	UPF3A	77	71.046	Rhinopithecus_roxellana
ENSTTRG00000015414	UPF3A	100	66.109	ENSSBOG00000029989	UPF3A	100	66.109	Saimiri_boliviensis_boliviensis
ENSTTRG00000015414	UPF3A	73	40.496	ENSSBOG00000019740	UPF3B	57	65.546	Saimiri_boliviensis_boliviensis
ENSTTRG00000015414	UPF3A	77	43.194	ENSSHAG00000008634	UPF3B	77	42.408	Sarcophilus_harrisii
ENSTTRG00000015414	UPF3A	78	69.003	ENSSHAG00000009895	UPF3A	87	69.003	Sarcophilus_harrisii
ENSTTRG00000015414	UPF3A	77	50.653	ENSSFOG00015021851	upf3a	80	50.914	Scleropages_formosus
ENSTTRG00000015414	UPF3A	71	51.791	ENSSMAG00000003858	upf3a	72	51.892	Scophthalmus_maximus
ENSTTRG00000015414	UPF3A	78	51.269	ENSSDUG00000009680	upf3a	73	53.425	Seriola_dumerili
ENSTTRG00000015414	UPF3A	78	53.439	ENSSLDG00000009700	upf3a	72	55.587	Seriola_lalandi_dorsalis
ENSTTRG00000015414	UPF3A	65	68.065	ENSSARG00000007262	UPF3A	75	68.065	Sorex_araneus
ENSTTRG00000015414	UPF3A	78	37.500	ENSSPUG00000013082	UPF3B	78	37.598	Sphenodon_punctatus
ENSTTRG00000015414	UPF3A	73	40.496	ENSSSCG00000012617	UPF3B	75	47.297	Sus_scrofa
ENSTTRG00000015414	UPF3A	100	69.008	ENSSSCG00000024679	UPF3A	97	69.008	Sus_scrofa
ENSTTRG00000015414	UPF3A	72	69.186	ENSTGUG00000009493	UPF3A	88	69.186	Taeniopygia_guttata
ENSTTRG00000015414	UPF3A	73	53.803	ENSTRUG00000012730	upf3a	73	53.803	Takifugu_rubripes
ENSTTRG00000015414	UPF3A	73	48.138	ENSTNIG00000014973	upf3a	86	47.851	Tetraodon_nigroviridis
ENSTTRG00000015414	UPF3A	66	61.783	ENSTBEG00000017186	-	99	61.783	Tupaia_belangeri
ENSTTRG00000015414	UPF3A	73	41.096	ENSUAMG00000024565	UPF3B	52	68.000	Ursus_americanus
ENSTTRG00000015414	UPF3A	73	38.920	ENSUMAG00000002150	UPF3B	76	40.616	Ursus_maritimus
ENSTTRG00000015414	UPF3A	75	39.948	ENSVPAG00000009971	UPF3B	91	46.056	Vicugna_pacos
ENSTTRG00000015414	UPF3A	78	75.269	ENSVPAG00000003525	UPF3A	91	75.269	Vicugna_pacos
ENSTTRG00000015414	UPF3A	73	41.274	ENSVVUG00000011594	UPF3B	52	79.310	Vulpes_vulpes
ENSTTRG00000015414	UPF3A	99	64.669	ENSVVUG00000013538	UPF3A	98	64.669	Vulpes_vulpes
ENSTTRG00000015414	UPF3A	71	53.235	ENSXETG00000002572	upf3a	80	52.890	Xenopus_tropicalis
ENSTTRG00000015414	UPF3A	78	39.062	ENSXETG00000007440	upf3b	83	39.062	Xenopus_tropicalis
ENSTTRG00000015414	UPF3A	74	43.662	ENSXCOG00000018591	upf3a	72	43.785	Xiphophorus_couchianus
ENSTTRG00000015414	UPF3A	74	55.618	ENSXMAG00000013452	upf3a	73	56.056	Xiphophorus_maculatus