EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTTRG00000016388 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Tursiops_truncatus
Status: putative
Strand: Plus strand
Length: 93445 bases
Position: chrscaffold_106724:17311-110755
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTTRP00000015532	Upf2	PF04050.14	6.2e-33	1	1
ENSTTRP00000015532	MIF4G	PF02854.19	4.8e-77	1	3
ENSTTRP00000015532	MIF4G	PF02854.19	4.8e-77	2	3
ENSTTRP00000015532	MIF4G	PF02854.19	4.8e-77	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTTRT00000016388	UPF2-201	3813	-	ENSTTRP00000015532	1270 (aa)	-	UPI00018B5AFB

Gene Model

Click here to download ENSTTRG00000016388's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTTRG00000016388's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTTRG00000016388	UPF2	100	97.642	ENSG00000151461	UPF2	100	97.642	Homo_sapiens
ENSTTRG00000016388	UPF2	99	77.821	ENSAPOG00000015837	UPF2	100	77.665	Acanthochromis_polyacanthus
ENSTTRG00000016388	UPF2	100	98.662	ENSAMEG00000004586	UPF2	100	98.662	Ailuropoda_melanoleuca
ENSTTRG00000016388	UPF2	99	81.861	ENSACIG00000018078	UPF2	100	81.783	Amphilophus_citrinellus
ENSTTRG00000016388	UPF2	100	81.889	ENSAOCG00000016766	UPF2	100	81.967	Amphiprion_ocellaris
ENSTTRG00000016388	UPF2	100	81.967	ENSAPEG00000019084	UPF2	100	82.045	Amphiprion_percula
ENSTTRG00000016388	UPF2	100	81.712	ENSATEG00000021677	UPF2	99	81.761	Anabas_testudineus
ENSTTRG00000016388	UPF2	100	86.871	ENSAPLG00000010287	UPF2	90	91.138	Anas_platyrhynchos
ENSTTRG00000016388	UPF2	100	91.817	ENSACAG00000009259	UPF2	100	92.054	Anolis_carolinensis
ENSTTRG00000016388	UPF2	99	88.120	ENSANAG00000028451	UPF2	99	86.389	Aotus_nancymaae
ENSTTRG00000016388	UPF2	100	81.265	ENSACLG00000012696	UPF2	100	81.889	Astatotilapia_calliptera
ENSTTRG00000016388	UPF2	99	82.786	ENSAMXG00000013700	UPF2	99	81.925	Astyanax_mexicanus
ENSTTRG00000016388	UPF2	100	99.056	ENSBTAG00000000288	UPF2	100	99.056	Bos_taurus
ENSTTRG00000016388	UPF2	63	30.429	WBGene00004881	smg-3	69	30.061	Caenorhabditis_elegans
ENSTTRG00000016388	UPF2	100	97.482	ENSCJAG00000020685	UPF2	100	97.482	Callithrix_jacchus
ENSTTRG00000016388	UPF2	100	98.820	ENSCAFG00000004839	UPF2	100	98.820	Canis_familiaris
ENSTTRG00000016388	UPF2	99	96.375	ENSCAFG00020005882	UPF2	100	96.375	Canis_lupus_dingo
ENSTTRG00000016388	UPF2	100	99.135	ENSCHIG00000020359	UPF2	100	99.135	Capra_hircus
ENSTTRG00000016388	UPF2	100	97.404	ENSTSYG00000000935	UPF2	100	97.404	Carlito_syrichta
ENSTTRG00000016388	UPF2	91	87.177	ENSCAPG00000016658	UPF2	95	86.747	Cavia_aperea
ENSTTRG00000016388	UPF2	99	95.635	ENSCPOG00000008809	UPF2	99	95.635	Cavia_porcellus
ENSTTRG00000016388	UPF2	100	91.975	ENSCCAG00000035991	UPF2	100	91.975	Cebus_capucinus
ENSTTRG00000016388	UPF2	100	97.799	ENSCATG00000032679	UPF2	100	97.799	Cercocebus_atys
ENSTTRG00000016388	UPF2	100	97.480	ENSCLAG00000011434	UPF2	100	97.480	Chinchilla_lanigera
ENSTTRG00000016388	UPF2	100	97.877	ENSCSAG00000013372	UPF2	100	97.877	Chlorocebus_sabaeus
ENSTTRG00000016388	UPF2	87	98.884	ENSCHOG00000000422	UPF2	89	98.884	Choloepus_hoffmanni
ENSTTRG00000016388	UPF2	99	92.981	ENSCPBG00000027823	UPF2	100	92.823	Chrysemys_picta_bellii
ENSTTRG00000016388	UPF2	79	48.766	ENSCSAVG00000007772	-	79	50.127	Ciona_savignyi
ENSTTRG00000016388	UPF2	99	90.938	ENSCANG00000040396	UPF2	100	90.401	Colobus_angolensis_palliatus
ENSTTRG00000016388	UPF2	100	97.718	ENSCGRG00001019347	Upf2	100	97.718	Cricetulus_griseus_chok1gshd
ENSTTRG00000016388	UPF2	100	97.718	ENSCGRG00000017993	Upf2	100	97.718	Cricetulus_griseus_crigri
ENSTTRG00000016388	UPF2	99	77.341	ENSCSEG00000003520	UPF2	99	76.972	Cynoglossus_semilaevis
ENSTTRG00000016388	UPF2	99	81.604	ENSCVAG00000006167	UPF2	100	81.211	Cyprinodon_variegatus
ENSTTRG00000016388	UPF2	100	98.348	ENSDNOG00000018160	UPF2	100	98.348	Dasypus_novemcinctus
ENSTTRG00000016388	UPF2	100	97.561	ENSDORG00000002478	Upf2	100	97.561	Dipodomys_ordii
ENSTTRG00000016388	UPF2	90	36.207	FBgn0029992	Upf2	85	43.750	Drosophila_melanogaster
ENSTTRG00000016388	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSTTRG00000016388	UPF2	69	68.703	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSTTRG00000016388	UPF2	100	98.425	ENSEASG00005019274	UPF2	100	98.765	Equus_asinus_asinus
ENSTTRG00000016388	UPF2	100	98.504	ENSECAG00000017022	UPF2	100	98.504	Equus_caballus
ENSTTRG00000016388	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSTTRG00000016388	UPF2	99	80.625	ENSELUG00000012014	UPF2	100	81.041	Esox_lucius
ENSTTRG00000016388	UPF2	100	98.895	ENSFCAG00000005785	UPF2	100	98.662	Felis_catus
ENSTTRG00000016388	UPF2	100	93.234	ENSFALG00000001889	UPF2	98	93.627	Ficedula_albicollis
ENSTTRG00000016388	UPF2	100	97.244	ENSFDAG00000014348	UPF2	100	97.244	Fukomys_damarensis
ENSTTRG00000016388	UPF2	99	82.041	ENSFHEG00000009826	UPF2	99	81.696	Fundulus_heteroclitus
ENSTTRG00000016388	UPF2	91	83.679	ENSGMOG00000005557	UPF2	91	83.333	Gadus_morhua
ENSTTRG00000016388	UPF2	100	93.475	ENSGALG00000033772	UPF2	100	92.060	Gallus_gallus
ENSTTRG00000016388	UPF2	100	80.094	ENSGAFG00000020867	UPF2	100	81.030	Gambusia_affinis
ENSTTRG00000016388	UPF2	91	84.124	ENSGACG00000001080	UPF2	100	81.235	Gasterosteus_aculeatus
ENSTTRG00000016388	UPF2	100	92.762	ENSGAGG00000002700	UPF2	100	93.076	Gopherus_agassizii
ENSTTRG00000016388	UPF2	100	97.642	ENSGGOG00000001479	UPF2	100	97.642	Gorilla_gorilla
ENSTTRG00000016388	UPF2	100	81.109	ENSHBUG00000004249	UPF2	100	81.861	Haplochromis_burtoni
ENSTTRG00000016388	UPF2	100	97.402	ENSHGLG00000015176	-	100	97.402	Heterocephalus_glaber_female
ENSTTRG00000016388	UPF2	99	86.446	ENSHGLG00000003822	-	99	85.500	Heterocephalus_glaber_female
ENSTTRG00000016388	UPF2	99	94.401	ENSHGLG00100010036	UPF2	100	94.479	Heterocephalus_glaber_male
ENSTTRG00000016388	UPF2	100	79.705	ENSHCOG00000004025	UPF2	99	79.705	Hippocampus_comes
ENSTTRG00000016388	UPF2	100	80.811	ENSIPUG00000015524	UPF2	100	81.109	Ictalurus_punctatus
ENSTTRG00000016388	UPF2	100	98.033	ENSSTOG00000013075	UPF2	100	98.033	Ictidomys_tridecemlineatus
ENSTTRG00000016388	UPF2	100	96.617	ENSJJAG00000004913	Upf2	100	96.617	Jaculus_jaculus
ENSTTRG00000016388	UPF2	92	84.596	ENSKMAG00000001071	UPF2	92	84.399	Kryptolebias_marmoratus
ENSTTRG00000016388	UPF2	80	81.121	ENSLBEG00000000728	-	93	81.219	Labrus_bergylta
ENSTTRG00000016388	UPF2	100	81.882	ENSLBEG00000016394	-	99	81.931	Labrus_bergylta
ENSTTRG00000016388	UPF2	99	79.232	ENSLACG00000015945	UPF2	100	78.213	Latimeria_chalumnae
ENSTTRG00000016388	UPF2	99	85.185	ENSLOCG00000015698	UPF2	100	85.106	Lepisosteus_oculatus
ENSTTRG00000016388	UPF2	100	97.720	ENSMFAG00000043865	UPF2	100	97.720	Macaca_fascicularis
ENSTTRG00000016388	UPF2	100	97.720	ENSMMUG00000008241	UPF2	100	97.720	Macaca_mulatta
ENSTTRG00000016388	UPF2	81	96.976	ENSMNEG00000008062	UPF2	100	96.976	Macaca_nemestrina
ENSTTRG00000016388	UPF2	95	99.517	ENSMLEG00000036120	UPF2	100	99.517	Mandrillus_leucophaeus
ENSTTRG00000016388	UPF2	100	81.479	ENSMAMG00000018276	UPF2	100	81.528	Mastacembelus_armatus
ENSTTRG00000016388	UPF2	100	81.265	ENSMZEG00005021595	UPF2	100	81.889	Maylandia_zebra
ENSTTRG00000016388	UPF2	99	92.762	ENSMGAG00000004573	UPF2	99	91.503	Meleagris_gallopavo
ENSTTRG00000016388	UPF2	100	95.358	ENSMAUG00000016512	Upf2	100	95.358	Mesocricetus_auratus
ENSTTRG00000016388	UPF2	95	98.980	ENSMICG00000001716	UPF2	99	98.964	Microcebus_murinus
ENSTTRG00000016388	UPF2	100	96.929	ENSMOCG00000008263	Upf2	100	96.929	Microtus_ochrogaster
ENSTTRG00000016388	UPF2	90	82.942	ENSMMOG00000006528	UPF2	100	78.873	Mola_mola
ENSTTRG00000016388	UPF2	100	95.673	ENSMODG00000016794	UPF2	100	96.066	Monodelphis_domestica
ENSTTRG00000016388	UPF2	99	81.455	ENSMALG00000002663	UPF2	100	81.426	Monopterus_albus
ENSTTRG00000016388	UPF2	100	97.168	MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	Mus_caroli
ENSTTRG00000016388	UPF2	100	97.168	ENSMUSG00000043241	Upf2	100	97.168	Mus_musculus
ENSTTRG00000016388	UPF2	100	96.774	MGP_PahariEiJ_G0019217	Upf2	100	97.524	Mus_pahari
ENSTTRG00000016388	UPF2	100	97.404	MGP_SPRETEiJ_G0024075	Upf2	100	97.905	Mus_spretus
ENSTTRG00000016388	UPF2	100	98.505	ENSMPUG00000001064	UPF2	100	98.505	Mustela_putorius_furo
ENSTTRG00000016388	UPF2	99	97.800	ENSMLUG00000000228	UPF2	100	97.800	Myotis_lucifugus
ENSTTRG00000016388	UPF2	100	81.265	ENSNBRG00000013629	UPF2	100	81.889	Neolamprologus_brichardi
ENSTTRG00000016388	UPF2	100	97.642	ENSNLEG00000012058	UPF2	100	97.642	Nomascus_leucogenys
ENSTTRG00000016388	UPF2	56	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSTTRG00000016388	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSTTRG00000016388	UPF2	100	96.929	ENSODEG00000001290	UPF2	100	96.929	Octodon_degus
ENSTTRG00000016388	UPF2	100	81.343	ENSONIG00000017991	UPF2	100	81.967	Oreochromis_niloticus
ENSTTRG00000016388	UPF2	99	97.176	ENSOCUG00000006230	UPF2	100	97.176	Oryctolagus_cuniculus
ENSTTRG00000016388	UPF2	100	81.012	ENSORLG00000017189	UPF2	100	81.030	Oryzias_latipes
ENSTTRG00000016388	UPF2	100	81.012	ENSORLG00020005969	UPF2	100	81.030	Oryzias_latipes_hni
ENSTTRG00000016388	UPF2	100	81.012	ENSORLG00015005713	UPF2	100	81.030	Oryzias_latipes_hsok
ENSTTRG00000016388	UPF2	99	77.613	ENSOMEG00000023420	UPF2	98	77.856	Oryzias_melastigma
ENSTTRG00000016388	UPF2	100	97.561	ENSOGAG00000005796	UPF2	100	97.561	Otolemur_garnettii
ENSTTRG00000016388	UPF2	100	98.979	ENSOARG00000014587	UPF2	100	98.979	Ovis_aries
ENSTTRG00000016388	UPF2	99	93.198	ENSPPAG00000037953	UPF2	100	92.756	Pan_paniscus
ENSTTRG00000016388	UPF2	100	98.662	ENSPPRG00000000690	UPF2	100	98.662	Panthera_pardus
ENSTTRG00000016388	UPF2	100	98.662	ENSPTIG00000008867	UPF2	100	98.662	Panthera_tigris_altaica
ENSTTRG00000016388	UPF2	100	97.642	ENSPTRG00000002291	UPF2	100	97.642	Pan_troglodytes
ENSTTRG00000016388	UPF2	100	97.720	ENSPANG00000023399	UPF2	100	97.720	Papio_anubis
ENSTTRG00000016388	UPF2	100	80.967	ENSPKIG00000025502	UPF2	100	80.343	Paramormyrops_kingsleyae
ENSTTRG00000016388	UPF2	59	91.766	ENSPSIG00000015158	UPF2	95	92.165	Pelodiscus_sinensis
ENSTTRG00000016388	UPF2	99	78.852	ENSPMGG00000005259	UPF2	100	80.110	Periophthalmus_magnuspinnatus
ENSTTRG00000016388	UPF2	93	94.169	ENSPEMG00000015731	Upf2	99	93.878	Peromyscus_maniculatus_bairdii
ENSTTRG00000016388	UPF2	100	95.201	ENSPCIG00000006656	UPF2	100	95.437	Phascolarctos_cinereus
ENSTTRG00000016388	UPF2	100	80.406	ENSPFOG00000017118	UPF2	100	81.343	Poecilia_formosa
ENSTTRG00000016388	UPF2	100	80.406	ENSPLAG00000005094	UPF2	100	81.343	Poecilia_latipinna
ENSTTRG00000016388	UPF2	100	80.406	ENSPMEG00000017009	UPF2	100	81.343	Poecilia_mexicana
ENSTTRG00000016388	UPF2	99	80.251	ENSPREG00000021880	UPF2	100	81.505	Poecilia_reticulata
ENSTTRG00000016388	UPF2	66	99.043	ENSPPYG00000002089	-	100	99.043	Pongo_abelii
ENSTTRG00000016388	UPF2	100	83.792	ENSPCAG00000000684	UPF2	100	83.792	Procavia_capensis
ENSTTRG00000016388	UPF2	99	94.720	ENSPCOG00000021656	UPF2	100	94.799	Propithecus_coquereli
ENSTTRG00000016388	UPF2	100	90.802	ENSPVAG00000017286	UPF2	100	90.723	Pteropus_vampyrus
ENSTTRG00000016388	UPF2	99	78.812	ENSPNYG00000017096	UPF2	100	79.437	Pundamilia_nyererei
ENSTTRG00000016388	UPF2	100	83.151	ENSPNAG00000009357	UPF2	100	82.449	Pygocentrus_nattereri
ENSTTRG00000016388	UPF2	99	90.659	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSTTRG00000016388	UPF2	99	96.690	ENSRBIG00000037780	UPF2	100	96.690	Rhinopithecus_bieti
ENSTTRG00000016388	UPF2	100	97.642	ENSRROG00000043547	UPF2	100	97.642	Rhinopithecus_roxellana
ENSTTRG00000016388	UPF2	100	97.246	ENSSBOG00000020012	UPF2	100	97.246	Saimiri_boliviensis_boliviensis
ENSTTRG00000016388	UPF2	100	81.556	ENSSFOG00015023788	upf2	100	83.035	Scleropages_formosus
ENSTTRG00000016388	UPF2	90	83.001	ENSSMAG00000007637	UPF2	100	79.519	Scophthalmus_maximus
ENSTTRG00000016388	UPF2	100	81.811	ENSSDUG00000017244	UPF2	99	82.045	Seriola_dumerili
ENSTTRG00000016388	UPF2	99	80.094	ENSSLDG00000016866	UPF2	100	80.408	Seriola_lalandi_dorsalis
ENSTTRG00000016388	UPF2	100	95.987	ENSSARG00000008615	UPF2	100	95.987	Sorex_araneus
ENSTTRG00000016388	UPF2	99	89.764	ENSSPUG00000014544	UPF2	99	90.079	Sphenodon_punctatus
ENSTTRG00000016388	UPF2	68	98.619	ENSSSCG00000011117	-	100	98.619	Sus_scrofa
ENSTTRG00000016388	UPF2	99	93.218	ENSTGUG00000002163	-	100	93.612	Taeniopygia_guttata
ENSTTRG00000016388	UPF2	100	80.826	ENSTRUG00000007519	UPF2	99	80.796	Takifugu_rubripes
ENSTTRG00000016388	UPF2	100	79.611	ENSTNIG00000004453	UPF2	100	79.501	Tetraodon_nigroviridis
ENSTTRG00000016388	UPF2	93	89.924	ENSTBEG00000012679	UPF2	93	88.992	Tupaia_belangeri
ENSTTRG00000016388	UPF2	94	99.306	ENSUAMG00000023560	UPF2	100	98.675	Ursus_americanus
ENSTTRG00000016388	UPF2	100	98.820	ENSUMAG00000012953	UPF2	95	98.820	Ursus_maritimus
ENSTTRG00000016388	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSTTRG00000016388	UPF2	100	98.741	ENSVVUG00000006166	UPF2	100	98.741	Vulpes_vulpes
ENSTTRG00000016388	UPF2	100	82.385	ENSXETG00000033103	UPF2	100	80.872	Xenopus_tropicalis
ENSTTRG00000016388	UPF2	99	79.984	ENSXCOG00000011604	UPF2	100	81.235	Xiphophorus_couchianus
ENSTTRG00000016388	UPF2	100	80.250	ENSXMAG00000017209	UPF2	100	81.187	Xiphophorus_maculatus