EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000000665 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 12574 bases
Position: chrLZNR01013408.1:69378-81951
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000000704	LSM	PF01423.22	7e-17	1	1
ENSUAMP00000000719	LSM	PF01423.22	9.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000000809	LSM4-201	3079	-	ENSUAMP00000000704	121 (aa)	-	-
ENSUAMT00000000825	LSM4-202	420	-	ENSUAMP00000000719	139 (aa)	-	UPI00004BD787

Gene Model

Click here to download ENSUAMG00000000665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000000665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000000665	LSM4	60	34.722	ENSUAMG00000010767	SNRPD3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000000665	LSM4	99	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSUAMG00000000665	LSM4	91	94.545	ENSAPOG00000005643	lsm4	72	94.545	Acanthochromis_polyacanthus
ENSUAMG00000000665	LSM4	100	100.000	ENSAMEG00000011162	LSM4	95	100.000	Ailuropoda_melanoleuca
ENSUAMG00000000665	LSM4	91	94.545	ENSAOCG00000006414	lsm4	74	94.545	Amphiprion_ocellaris
ENSUAMG00000000665	LSM4	91	94.545	ENSAPEG00000006238	lsm4	73	94.545	Amphiprion_percula
ENSUAMG00000000665	LSM4	91	94.545	ENSATEG00000016559	lsm4	72	94.545	Anabas_testudineus
ENSUAMG00000000665	LSM4	99	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSUAMG00000000665	LSM4	91	83.871	ENSACLG00000022738	lsm4	60	98.864	Astatotilapia_calliptera
ENSUAMG00000000665	LSM4	98	83.942	ENSAMXG00000016932	lsm4	62	97.727	Astyanax_mexicanus
ENSUAMG00000000665	LSM4	100	100.000	ENSBTAG00000008578	LSM4	100	100.000	Bos_taurus
ENSUAMG00000000665	LSM4	69	75.904	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSUAMG00000000665	LSM4	99	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSUAMG00000000665	LSM4	99	100.000	ENSCAFG00000014900	LSM4	90	100.000	Canis_familiaris
ENSUAMG00000000665	LSM4	99	100.000	ENSCAFG00020012137	LSM4	99	100.000	Canis_lupus_dingo
ENSUAMG00000000665	LSM4	100	100.000	ENSCHIG00000010928	LSM4	92	100.000	Capra_hircus
ENSUAMG00000000665	LSM4	99	99.275	ENSTSYG00000030906	LSM4	100	99.200	Carlito_syrichta
ENSUAMG00000000665	LSM4	99	97.826	ENSCAPG00000014140	LSM4	99	97.826	Cavia_aperea
ENSUAMG00000000665	LSM4	99	97.826	ENSCPOG00000024117	LSM4	99	97.826	Cavia_porcellus
ENSUAMG00000000665	LSM4	99	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSUAMG00000000665	LSM4	99	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSUAMG00000000665	LSM4	99	96.377	ENSCLAG00000010828	LSM4	99	96.377	Chinchilla_lanigera
ENSUAMG00000000665	LSM4	99	100.000	ENSCSAG00000005370	LSM4	99	100.000	Chlorocebus_sabaeus
ENSUAMG00000000665	LSM4	91	97.273	ENSCPBG00000012925	LSM4	99	89.855	Chrysemys_picta_bellii
ENSUAMG00000000665	LSM4	71	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSUAMG00000000665	LSM4	71	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSUAMG00000000665	LSM4	99	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSUAMG00000000665	LSM4	99	95.652	ENSCGRG00001014436	Lsm4	99	95.652	Cricetulus_griseus_chok1gshd
ENSUAMG00000000665	LSM4	99	95.652	ENSCGRG00000009398	Lsm4	100	95.652	Cricetulus_griseus_crigri
ENSUAMG00000000665	LSM4	80	95.876	ENSCSEG00000016127	lsm4	74	91.429	Cynoglossus_semilaevis
ENSUAMG00000000665	LSM4	69	95.238	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSUAMG00000000665	LSM4	82	95.960	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSUAMG00000000665	LSM4	82	95.960	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSUAMG00000000665	LSM4	99	97.826	ENSDORG00000024225	Lsm4	99	97.826	Dipodomys_ordii
ENSUAMG00000000665	LSM4	80	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSUAMG00000000665	LSM4	89	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSUAMG00000000665	LSM4	62	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSUAMG00000000665	LSM4	99	100.000	ENSECAG00000010141	LSM4	56	100.000	Equus_caballus
ENSUAMG00000000665	LSM4	95	84.328	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSUAMG00000000665	LSM4	99	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSUAMG00000000665	LSM4	90	97.248	ENSFALG00000009478	LSM4	100	89.928	Ficedula_albicollis
ENSUAMG00000000665	LSM4	99	97.101	ENSFDAG00000010124	LSM4	100	97.101	Fukomys_damarensis
ENSUAMG00000000665	LSM4	79	96.875	ENSGMOG00000007729	lsm4	60	98.864	Gadus_morhua
ENSUAMG00000000665	LSM4	91	97.273	ENSGALG00000003385	LSM4	99	89.855	Gallus_gallus
ENSUAMG00000000665	LSM4	100	78.519	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSUAMG00000000665	LSM4	79	97.895	ENSGACG00000008140	lsm4	59	98.864	Gasterosteus_aculeatus
ENSUAMG00000000665	LSM4	91	97.273	ENSGAGG00000017812	LSM4	99	89.855	Gopherus_agassizii
ENSUAMG00000000665	LSM4	99	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSUAMG00000000665	LSM4	99	97.101	ENSHGLG00000006568	LSM4	99	97.101	Heterocephalus_glaber_female
ENSUAMG00000000665	LSM4	77	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSUAMG00000000665	LSM4	82	96.970	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSUAMG00000000665	LSM4	98	83.942	ENSIPUG00000005368	Lsm4	96	75.912	Ictalurus_punctatus
ENSUAMG00000000665	LSM4	99	100.000	ENSSTOG00000016494	LSM4	99	100.000	Ictidomys_tridecemlineatus
ENSUAMG00000000665	LSM4	99	97.101	ENSJJAG00000017420	Lsm4	99	97.101	Jaculus_jaculus
ENSUAMG00000000665	LSM4	71	97.674	ENSKMAG00000005073	lsm4	61	97.727	Kryptolebias_marmoratus
ENSUAMG00000000665	LSM4	91	94.545	ENSLBEG00000027930	lsm4	73	94.545	Labrus_bergylta
ENSUAMG00000000665	LSM4	91	95.495	ENSLACG00000015861	LSM4	97	83.088	Latimeria_chalumnae
ENSUAMG00000000665	LSM4	92	83.594	ENSLOCG00000002025	lsm4	97	75.182	Lepisosteus_oculatus
ENSUAMG00000000665	LSM4	100	98.561	ENSLAFG00000017459	LSM4	100	98.561	Loxodonta_africana
ENSUAMG00000000665	LSM4	99	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSUAMG00000000665	LSM4	99	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSUAMG00000000665	LSM4	99	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSUAMG00000000665	LSM4	99	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSUAMG00000000665	LSM4	91	94.545	ENSMAMG00000006190	lsm4	77	94.545	Mastacembelus_armatus
ENSUAMG00000000665	LSM4	91	83.871	ENSMZEG00005016420	lsm4	60	98.864	Maylandia_zebra
ENSUAMG00000000665	LSM4	100	82.857	ENSMGAG00000004976	LSM4	100	89.928	Meleagris_gallopavo
ENSUAMG00000000665	LSM4	99	99.275	ENSMICG00000000222	LSM4	100	99.200	Microcebus_murinus
ENSUAMG00000000665	LSM4	99	96.377	ENSMOCG00000020861	Lsm4	99	96.377	Microtus_ochrogaster
ENSUAMG00000000665	LSM4	89	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSUAMG00000000665	LSM4	82	95.960	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSUAMG00000000665	LSM4	99	96.377	MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	Mus_caroli
ENSUAMG00000000665	LSM4	99	96.377	ENSMUSG00000031848	Lsm4	99	96.377	Mus_musculus
ENSUAMG00000000665	LSM4	99	96.377	MGP_PahariEiJ_G0021623	Lsm4	99	96.377	Mus_pahari
ENSUAMG00000000665	LSM4	99	96.377	MGP_SPRETEiJ_G0032276	Lsm4	99	96.377	Mus_spretus
ENSUAMG00000000665	LSM4	99	100.000	ENSMPUG00000015589	LSM4	99	100.000	Mustela_putorius_furo
ENSUAMG00000000665	LSM4	100	100.000	ENSMLUG00000004010	LSM4	100	100.000	Myotis_lucifugus
ENSUAMG00000000665	LSM4	99	96.377	ENSNGAG00000008644	Lsm4	100	96.241	Nannospalax_galili
ENSUAMG00000000665	LSM4	81	96.939	ENSNBRG00000022150	lsm4	54	98.864	Neolamprologus_brichardi
ENSUAMG00000000665	LSM4	89	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSUAMG00000000665	LSM4	89	93.548	ENSOPRG00000005575	LSM4	100	83.065	Ochotona_princeps
ENSUAMG00000000665	LSM4	99	73.188	ENSODEG00000011712	-	99	73.188	Octodon_degus
ENSUAMG00000000665	LSM4	99	86.957	ENSODEG00000004519	-	99	74.638	Octodon_degus
ENSUAMG00000000665	LSM4	99	97.101	ENSODEG00000020549	-	99	97.101	Octodon_degus
ENSUAMG00000000665	LSM4	91	83.871	ENSONIG00000012724	lsm4	60	98.864	Oreochromis_niloticus
ENSUAMG00000000665	LSM4	72	93.407	ENSOANG00000007434	LSM4	79	93.478	Ornithorhynchus_anatinus
ENSUAMG00000000665	LSM4	98	85.000	ENSORLG00000008391	lsm4	61	97.727	Oryzias_latipes
ENSUAMG00000000665	LSM4	91	83.065	ENSORLG00020014829	lsm4	61	97.727	Oryzias_latipes_hni
ENSUAMG00000000665	LSM4	98	85.000	ENSORLG00015010205	lsm4	61	97.727	Oryzias_latipes_hsok
ENSUAMG00000000665	LSM4	99	82.609	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSUAMG00000000665	LSM4	90	99.083	ENSOGAG00000027992	LSM4	75	99.083	Otolemur_garnettii
ENSUAMG00000000665	LSM4	90	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSUAMG00000000665	LSM4	99	100.000	ENSPPAG00000044045	-	100	100.000	Pan_paniscus
ENSUAMG00000000665	LSM4	99	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSUAMG00000000665	LSM4	99	100.000	ENSPTIG00000006306	LSM4	100	100.000	Panthera_tigris_altaica
ENSUAMG00000000665	LSM4	99	100.000	ENSPTRG00000031470	LSM4	100	100.000	Pan_troglodytes
ENSUAMG00000000665	LSM4	99	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSUAMG00000000665	LSM4	98	81.618	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSUAMG00000000665	LSM4	90	97.248	ENSPSIG00000012358	LSM4	100	89.855	Pelodiscus_sinensis
ENSUAMG00000000665	LSM4	100	95.683	ENSPEMG00000001358	Lsm4	99	96.377	Peromyscus_maniculatus_bairdii
ENSUAMG00000000665	LSM4	88	94.340	ENSPLAG00000016267	lsm4	62	98.864	Poecilia_latipinna
ENSUAMG00000000665	LSM4	99	78.571	ENSPMEG00000016378	lsm4	63	98.864	Poecilia_mexicana
ENSUAMG00000000665	LSM4	99	100.000	ENSPPYG00000009736	LSM4	99	100.000	Pongo_abelii
ENSUAMG00000000665	LSM4	89	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSUAMG00000000665	LSM4	99	99.275	ENSPCOG00000019837	LSM4	100	99.200	Propithecus_coquereli
ENSUAMG00000000665	LSM4	99	100.000	ENSPVAG00000015383	LSM4	99	100.000	Pteropus_vampyrus
ENSUAMG00000000665	LSM4	91	83.871	ENSPNYG00000016794	lsm4	60	98.864	Pundamilia_nyererei
ENSUAMG00000000665	LSM4	96	83.582	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSUAMG00000000665	LSM4	99	96.377	ENSRNOG00000019572	Lsm4	99	96.377	Rattus_norvegicus
ENSUAMG00000000665	LSM4	99	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSUAMG00000000665	LSM4	99	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSUAMG00000000665	LSM4	69	40.860	YER112W	LSM4	50	40.860	Saccharomyces_cerevisiae
ENSUAMG00000000665	LSM4	90	100.000	ENSSBOG00000022455	LSM4	100	100.000	Saimiri_boliviensis_boliviensis
ENSUAMG00000000665	LSM4	99	96.377	ENSSHAG00000011559	LSM4	99	96.377	Sarcophilus_harrisii
ENSUAMG00000000665	LSM4	98	80.147	ENSSFOG00015021067	lsm4	62	98.864	Scleropages_formosus
ENSUAMG00000000665	LSM4	82	95.960	ENSSMAG00000021020	lsm4	94	72.340	Scophthalmus_maximus
ENSUAMG00000000665	LSM4	91	94.545	ENSSDUG00000009588	lsm4	65	94.545	Seriola_dumerili
ENSUAMG00000000665	LSM4	91	94.545	ENSSLDG00000006827	lsm4	65	94.545	Seriola_lalandi_dorsalis
ENSUAMG00000000665	LSM4	72	98.851	ENSSPUG00000010166	LSM4	57	98.864	Sphenodon_punctatus
ENSUAMG00000000665	LSM4	91	94.545	ENSSPAG00000011615	lsm4	72	94.545	Stegastes_partitus
ENSUAMG00000000665	LSM4	99	100.000	ENSSSCG00000034314	LSM4	99	100.000	Sus_scrofa
ENSUAMG00000000665	LSM4	92	80.800	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSUAMG00000000665	LSM4	98	80.576	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSUAMG00000000665	LSM4	99	100.000	ENSUMAG00000009013	LSM4	99	100.000	Ursus_maritimus
ENSUAMG00000000665	LSM4	100	99.281	ENSVVUG00000008136	LSM4	71	99.281	Vulpes_vulpes
ENSUAMG00000000665	LSM4	99	91.304	ENSXETG00000024933	lsm4	99	89.130	Xenopus_tropicalis