EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000000912 (Gene tree)
Gene ID: -
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 4947 bases
Position: chrLZNR01001901.1:91387-96333
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000000925	LSM	PF01423.22	5.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000001059	LSM7-201	476	-	ENSUAMP00000000925	120 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000000912's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000000912's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000000912	LSM7	59	38.028	ENSUAMG00000025835	-	83	38.028
ENSUAMG00000000912	LSM7	58	40.000	ENSUAMG00000020319	-	85	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000000912	LSM7	86	97.087	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSUAMG00000000912	LSM7	79	93.684	ENSAPOG00000015573	lsm7	82	93.684	Acanthochromis_polyacanthus
ENSUAMG00000000912	LSM7	86	100.000	ENSAMEG00000005484	LSM7	100	100.000	Ailuropoda_melanoleuca
ENSUAMG00000000912	LSM7	81	93.814	ENSACIG00000006498	lsm7	77	93.814	Amphilophus_citrinellus
ENSUAMG00000000912	LSM7	85	93.137	ENSAOCG00000001077	lsm7	93	93.137	Amphiprion_ocellaris
ENSUAMG00000000912	LSM7	86	92.233	ENSAPEG00000000694	lsm7	100	92.233	Amphiprion_percula
ENSUAMG00000000912	LSM7	86	94.175	ENSAPEG00000024447	lsm7	92	94.175	Amphiprion_percula
ENSUAMG00000000912	LSM7	86	92.233	ENSATEG00000008557	lsm7	100	92.233	Anabas_testudineus
ENSUAMG00000000912	LSM7	86	89.320	ENSANAG00000022222	-	100	89.320	Aotus_nancymaae
ENSUAMG00000000912	LSM7	86	97.087	ENSANAG00000037196	-	100	97.087	Aotus_nancymaae
ENSUAMG00000000912	LSM7	86	91.262	ENSACLG00000021021	lsm7	100	91.262	Astatotilapia_calliptera
ENSUAMG00000000912	LSM7	86	92.233	ENSAMXG00000037622	lsm7	100	92.233	Astyanax_mexicanus
ENSUAMG00000000912	LSM7	86	97.087	ENSBTAG00000004521	LSM7	100	97.087	Bos_taurus
ENSUAMG00000000912	LSM7	84	56.436	WBGene00003081	lsm-7	97	56.436	Caenorhabditis_elegans
ENSUAMG00000000912	LSM7	85	100.000	ENSCAFG00000019409	LSM7	99	100.000	Canis_familiaris
ENSUAMG00000000912	LSM7	100	98.333	ENSCAFG00020018168	LSM7	88	87.500	Canis_lupus_dingo
ENSUAMG00000000912	LSM7	86	99.029	ENSCHIG00000023663	LSM7	100	99.029	Capra_hircus
ENSUAMG00000000912	LSM7	59	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSUAMG00000000912	LSM7	86	97.087	ENSCPOG00000014025	LSM7	100	99.010	Cavia_porcellus
ENSUAMG00000000912	LSM7	84	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSUAMG00000000912	LSM7	86	97.087	ENSCATG00000023543	LSM7	100	97.087	Cercocebus_atys
ENSUAMG00000000912	LSM7	86	97.087	ENSCLAG00000011635	LSM7	100	97.087	Chinchilla_lanigera
ENSUAMG00000000912	LSM7	86	97.087	ENSCSAG00000011599	LSM7	100	97.087	Chlorocebus_sabaeus
ENSUAMG00000000912	LSM7	60	93.056	ENSCPBG00000021317	LSM7	77	93.056	Chrysemys_picta_bellii
ENSUAMG00000000912	LSM7	80	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSUAMG00000000912	LSM7	86	97.087	ENSCANG00000035525	LSM7	100	97.087	Colobus_angolensis_palliatus
ENSUAMG00000000912	LSM7	75	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSUAMG00000000912	LSM7	86	96.117	ENSCGRG00001000807	-	100	96.117	Cricetulus_griseus_chok1gshd
ENSUAMG00000000912	LSM7	75	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSUAMG00000000912	LSM7	85	98.039	ENSCGRG00000014355	-	98	98.039	Cricetulus_griseus_crigri
ENSUAMG00000000912	LSM7	85	93.137	ENSCSEG00000014900	lsm7	86	94.059	Cynoglossus_semilaevis
ENSUAMG00000000912	LSM7	85	94.118	ENSCVAG00000021091	lsm7	94	94.118	Cyprinodon_variegatus
ENSUAMG00000000912	LSM7	86	92.233	ENSDARG00000058328	lsm7	100	92.233	Danio_rerio
ENSUAMG00000000912	LSM7	84	99.010	ENSDORG00000024460	Lsm7	99	99.010	Dipodomys_ordii
ENSUAMG00000000912	LSM7	81	77.551	FBgn0261068	LSm7	89	77.551	Drosophila_melanogaster
ENSUAMG00000000912	LSM7	85	96.078	ENSETEG00000012788	LSM7	100	96.078	Echinops_telfairi
ENSUAMG00000000912	LSM7	86	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSUAMG00000000912	LSM7	69	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSUAMG00000000912	LSM7	86	93.204	ENSECAG00000001440	LSM7	66	93.204	Equus_caballus
ENSUAMG00000000912	LSM7	86	98.058	ENSFCAG00000003445	LSM7	100	98.058	Felis_catus
ENSUAMG00000000912	LSM7	84	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSUAMG00000000912	LSM7	80	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSUAMG00000000912	LSM7	77	94.565	ENSFHEG00000006349	lsm7	90	95.050	Fundulus_heteroclitus
ENSUAMG00000000912	LSM7	86	92.233	ENSGMOG00000013320	lsm7	100	92.233	Gadus_morhua
ENSUAMG00000000912	LSM7	86	93.204	ENSGAFG00000013902	lsm7	100	93.204	Gambusia_affinis
ENSUAMG00000000912	LSM7	86	92.233	ENSGACG00000010390	lsm7	100	92.233	Gasterosteus_aculeatus
ENSUAMG00000000912	LSM7	86	97.087	ENSGGOG00000010172	LSM7	100	97.087	Gorilla_gorilla
ENSUAMG00000000912	LSM7	88	89.623	ENSHBUG00000004616	lsm7	100	91.262	Haplochromis_burtoni
ENSUAMG00000000912	LSM7	86	97.087	ENSHGLG00000010587	LSM7	100	97.087	Heterocephalus_glaber_female
ENSUAMG00000000912	LSM7	86	97.087	ENSHGLG00100000852	LSM7	100	97.087	Heterocephalus_glaber_male
ENSUAMG00000000912	LSM7	84	93.069	ENSHCOG00000020252	lsm7	100	93.069	Hippocampus_comes
ENSUAMG00000000912	LSM7	86	92.233	ENSIPUG00000024724	lsm7	100	92.233	Ictalurus_punctatus
ENSUAMG00000000912	LSM7	85	99.020	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSUAMG00000000912	LSM7	84	97.030	ENSJJAG00000001936	Lsm7	98	97.030	Jaculus_jaculus
ENSUAMG00000000912	LSM7	86	93.204	ENSKMAG00000022151	lsm7	100	93.204	Kryptolebias_marmoratus
ENSUAMG00000000912	LSM7	86	92.233	ENSLBEG00000005203	lsm7	100	92.233	Labrus_bergylta
ENSUAMG00000000912	LSM7	86	97.087	ENSLACG00000015700	LSM7	100	97.087	Latimeria_chalumnae
ENSUAMG00000000912	LSM7	86	96.117	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSUAMG00000000912	LSM7	85	99.020	ENSLAFG00000029302	LSM7	99	99.020	Loxodonta_africana
ENSUAMG00000000912	LSM7	86	97.087	ENSMFAG00000044572	LSM7	100	97.087	Macaca_fascicularis
ENSUAMG00000000912	LSM7	86	97.087	ENSMMUG00000000452	LSM7	99	99.010	Macaca_mulatta
ENSUAMG00000000912	LSM7	86	97.087	ENSMNEG00000004393	LSM7	100	97.087	Macaca_nemestrina
ENSUAMG00000000912	LSM7	86	97.087	ENSMLEG00000030852	LSM7	100	99.010	Mandrillus_leucophaeus
ENSUAMG00000000912	LSM7	86	91.262	ENSMAMG00000005410	lsm7	100	91.262	Mastacembelus_armatus
ENSUAMG00000000912	LSM7	86	91.262	ENSMZEG00005028055	lsm7	100	91.262	Maylandia_zebra
ENSUAMG00000000912	LSM7	86	95.146	ENSMGAG00000000750	LSM7	89	95.146	Meleagris_gallopavo
ENSUAMG00000000912	LSM7	86	97.087	ENSMAUG00000009276	Lsm7	100	97.087	Mesocricetus_auratus
ENSUAMG00000000912	LSM7	86	97.087	ENSMICG00000028619	-	100	97.087	Microcebus_murinus
ENSUAMG00000000912	LSM7	86	98.058	ENSMICG00000009988	-	100	98.058	Microcebus_murinus
ENSUAMG00000000912	LSM7	86	96.117	ENSMOCG00000016925	Lsm7	100	96.117	Microtus_ochrogaster
ENSUAMG00000000912	LSM7	86	92.233	ENSMMOG00000019645	lsm7	98	92.233	Mola_mola
ENSUAMG00000000912	LSM7	86	96.117	ENSMODG00000004722	LSM7	100	96.117	Monodelphis_domestica
ENSUAMG00000000912	LSM7	93	85.586	ENSMALG00000014511	lsm7	85	85.586	Monopterus_albus
ENSUAMG00000000912	LSM7	86	95.146	MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	Mus_caroli
ENSUAMG00000000912	LSM7	86	95.146	ENSMUSG00000035215	Lsm7	100	95.146	Mus_musculus
ENSUAMG00000000912	LSM7	86	95.146	MGP_PahariEiJ_G0031020	Lsm7	100	95.146	Mus_pahari
ENSUAMG00000000912	LSM7	86	95.146	MGP_SPRETEiJ_G0016425	Lsm7	100	95.146	Mus_spretus
ENSUAMG00000000912	LSM7	86	98.058	ENSMLUG00000013097	-	100	98.058	Myotis_lucifugus
ENSUAMG00000000912	LSM7	86	89.320	ENSMLUG00000024002	-	94	89.320	Myotis_lucifugus
ENSUAMG00000000912	LSM7	86	95.146	ENSNGAG00000021637	Lsm7	100	95.146	Nannospalax_galili
ENSUAMG00000000912	LSM7	88	89.623	ENSNBRG00000015770	lsm7	91	89.623	Neolamprologus_brichardi
ENSUAMG00000000912	LSM7	78	93.617	ENSNBRG00000001237	-	91	86.842	Neolamprologus_brichardi
ENSUAMG00000000912	LSM7	86	97.087	ENSNLEG00000002265	LSM7	100	97.087	Nomascus_leucogenys
ENSUAMG00000000912	LSM7	86	97.087	ENSODEG00000013590	-	100	97.087	Octodon_degus
ENSUAMG00000000912	LSM7	86	90.291	ENSODEG00000018769	-	100	90.291	Octodon_degus
ENSUAMG00000000912	LSM7	86	76.699	ENSODEG00000008190	-	100	76.699	Octodon_degus
ENSUAMG00000000912	LSM7	86	91.262	ENSONIG00000001801	lsm7	89	91.262	Oreochromis_niloticus
ENSUAMG00000000912	LSM7	88	92.381	ENSORLG00000023951	lsm7	100	92.233	Oryzias_latipes
ENSUAMG00000000912	LSM7	86	94.175	ENSORLG00020022226	lsm7	100	92.233	Oryzias_latipes_hni
ENSUAMG00000000912	LSM7	88	92.381	ENSORLG00015020044	lsm7	94	93.137	Oryzias_latipes_hsok
ENSUAMG00000000912	LSM7	86	92.233	ENSOMEG00000012806	lsm7	100	92.233	Oryzias_melastigma
ENSUAMG00000000912	LSM7	86	85.437	ENSOGAG00000024373	-	100	85.437	Otolemur_garnettii
ENSUAMG00000000912	LSM7	85	97.059	ENSOGAG00000000144	-	100	97.059	Otolemur_garnettii
ENSUAMG00000000912	LSM7	86	99.029	ENSOARG00000014013	LSM7	100	99.029	Ovis_aries
ENSUAMG00000000912	LSM7	86	97.087	ENSPPAG00000026500	LSM7	100	97.087	Pan_paniscus
ENSUAMG00000000912	LSM7	86	98.058	ENSPPRG00000008624	LSM7	100	98.058	Panthera_pardus
ENSUAMG00000000912	LSM7	84	100.000	ENSPTIG00000016252	LSM7	98	100.000	Panthera_tigris_altaica
ENSUAMG00000000912	LSM7	86	97.087	ENSPTRG00000010233	LSM7	100	97.087	Pan_troglodytes
ENSUAMG00000000912	LSM7	86	97.087	ENSPANG00000020668	LSM7	100	97.087	Papio_anubis
ENSUAMG00000000912	LSM7	89	91.589	ENSPKIG00000011325	lsm7	100	94.175	Paramormyrops_kingsleyae
ENSUAMG00000000912	LSM7	84	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSUAMG00000000912	LSM7	86	92.233	ENSPMGG00000006498	lsm7	100	92.233	Periophthalmus_magnuspinnatus
ENSUAMG00000000912	LSM7	86	96.117	ENSPCIG00000030454	LSM7	99	98.020	Phascolarctos_cinereus
ENSUAMG00000000912	LSM7	86	94.175	ENSPFOG00000012467	lsm7	91	94.175	Poecilia_formosa
ENSUAMG00000000912	LSM7	86	94.175	ENSPLAG00000000252	lsm7	94	94.059	Poecilia_latipinna
ENSUAMG00000000912	LSM7	86	94.175	ENSPMEG00000000587	lsm7	94	94.059	Poecilia_mexicana
ENSUAMG00000000912	LSM7	67	72.840	ENSPREG00000016718	lsm7	65	72.840	Poecilia_reticulata
ENSUAMG00000000912	LSM7	96	68.696	ENSPPYG00000009348	-	73	68.696	Pongo_abelii
ENSUAMG00000000912	LSM7	86	97.087	ENSPCOG00000017177	LSM7	99	99.010	Propithecus_coquereli
ENSUAMG00000000912	LSM7	86	91.262	ENSPNYG00000006938	lsm7	100	91.262	Pundamilia_nyererei
ENSUAMG00000000912	LSM7	86	92.233	ENSPNAG00000010141	lsm7	99	94.059	Pygocentrus_nattereri
ENSUAMG00000000912	LSM7	86	95.146	ENSRNOG00000019552	Lsm7	100	95.146	Rattus_norvegicus
ENSUAMG00000000912	LSM7	86	97.087	ENSRBIG00000035978	LSM7	100	97.087	Rhinopithecus_bieti
ENSUAMG00000000912	LSM7	86	97.087	ENSRROG00000034044	LSM7	100	97.087	Rhinopithecus_roxellana
ENSUAMG00000000912	LSM7	72	49.438	YNL147W	-	77	49.438	Saccharomyces_cerevisiae
ENSUAMG00000000912	LSM7	86	97.087	ENSSBOG00000034899	LSM7	100	97.087	Saimiri_boliviensis_boliviensis
ENSUAMG00000000912	LSM7	86	92.233	ENSSFOG00015006728	lsm7	100	92.233	Scleropages_formosus
ENSUAMG00000000912	LSM7	86	93.204	ENSSMAG00000004195	lsm7	94	93.204	Scophthalmus_maximus
ENSUAMG00000000912	LSM7	86	92.233	ENSSDUG00000001863	lsm7	100	92.233	Seriola_dumerili
ENSUAMG00000000912	LSM7	86	92.233	ENSSLDG00000016339	lsm7	100	92.233	Seriola_lalandi_dorsalis
ENSUAMG00000000912	LSM7	86	92.233	ENSSPAG00000015221	lsm7	100	92.233	Stegastes_partitus
ENSUAMG00000000912	LSM7	84	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSUAMG00000000912	LSM7	84	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSUAMG00000000912	LSM7	86	92.233	ENSTRUG00000022913	lsm7	100	92.233	Takifugu_rubripes
ENSUAMG00000000912	LSM7	86	92.233	ENSTNIG00000015525	lsm7	100	92.233	Tetraodon_nigroviridis
ENSUAMG00000000912	LSM7	58	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSUAMG00000000912	LSM7	87	98.077	ENSUMAG00000006556	LSM7	81	98.077	Ursus_maritimus
ENSUAMG00000000912	LSM7	59	100.000	ENSVVUG00000002640	LSM7	65	100.000	Vulpes_vulpes
ENSUAMG00000000912	LSM7	84	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSUAMG00000000912	LSM7	84	95.050	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSUAMG00000000912	LSM7	88	93.396	ENSXMAG00000018630	lsm7	100	93.204	Xiphophorus_maculatus