EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000001608 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Minus strand
Length: 112117 bases
Position: chrLZNR01004114.1:25136-137252
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000007226	XRN_N	PF03159.18	1.5e-72	1	1
ENSUAMP00000007215	XRN_N	PF03159.18	4e-72	1	1
ENSUAMP00000007178	XRN_N	PF03159.18	4e-72	1	1
ENSUAMP00000007103	XRN_N	PF03159.18	4.3e-72	1	1
ENSUAMP00000007047	XRN_N	PF03159.18	4.9e-72	1	1
ENSUAMP00000007045	XRN_N	PF03159.18	5e-72	1	1
ENSUAMP00000007042	XRN_N	PF03159.18	5.2e-72	1	1
ENSUAMP00000007065	XRN_N	PF03159.18	3.8e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000007989	XRN1-202	5088	-	ENSUAMP00000007045	1695 (aa)	-	-
ENSUAMT00000008132	XRN1-206	4095	-	ENSUAMP00000007178	1364 (aa)	-	-
ENSUAMT00000007991	XRN1-203	5082	-	ENSUAMP00000007047	1693 (aa)	-	-
ENSUAMT00000007985	XRN1-201	5154	-	ENSUAMP00000007042	1717 (aa)	-	-
ENSUAMT00000008184	XRN1-208	2865	-	ENSUAMP00000007226	954 (aa)	-	-
ENSUAMT00000008048	XRN1-205	4290	-	ENSUAMP00000007103	1429 (aa)	-	-
ENSUAMT00000008009	XRN1-204	4545	-	ENSUAMP00000007065	1514 (aa)	-	-
ENSUAMT00000008172	XRN1-207	4044	-	ENSUAMP00000007215	1347 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000001608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000001608's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000001608	XRN1	61	39.264	ENSUAMG00000024634	XRN2	76	39.847

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000001608	XRN1	99	94.286	ENSG00000114127	XRN1	96	100.000	Homo_sapiens
ENSUAMG00000001608	XRN1	99	75.079	ENSAPOG00000000622	xrn1	93	72.281	Acanthochromis_polyacanthus
ENSUAMG00000001608	XRN1	99	98.813	ENSAMEG00000012538	XRN1	100	96.880	Ailuropoda_melanoleuca
ENSUAMG00000001608	XRN1	99	74.882	ENSACIG00000001057	xrn1	93	70.732	Amphilophus_citrinellus
ENSUAMG00000001608	XRN1	99	75.199	ENSAOCG00000014097	xrn1	86	85.246	Amphiprion_ocellaris
ENSUAMG00000001608	XRN1	99	75.199	ENSAPEG00000006620	xrn1	91	70.947	Amphiprion_percula
ENSUAMG00000001608	XRN1	99	72.611	ENSATEG00000009752	xrn1	99	69.444	Anabas_testudineus
ENSUAMG00000001608	XRN1	99	81.796	ENSAPLG00000004905	XRN1	100	75.130	Anas_platyrhynchos
ENSUAMG00000001608	XRN1	99	82.934	ENSACAG00000004985	XRN1	100	71.429	Anolis_carolinensis
ENSUAMG00000001608	XRN1	100	92.330	ENSANAG00000029013	XRN1	99	93.469	Aotus_nancymaae
ENSUAMG00000001608	XRN1	99	73.618	ENSACLG00000004806	xrn1	96	60.468	Astatotilapia_calliptera
ENSUAMG00000001608	XRN1	99	72.536	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSUAMG00000001608	XRN1	99	98.204	ENSBTAG00000011524	XRN1	100	92.681	Bos_taurus
ENSUAMG00000001608	XRN1	93	50.376	WBGene00012730	xrn-1	80	38.150	Caenorhabditis_elegans
ENSUAMG00000001608	XRN1	99	93.429	ENSCJAG00000001872	XRN1	100	91.979	Callithrix_jacchus
ENSUAMG00000001608	XRN1	99	99.701	ENSCAFG00000007783	XRN1	100	96.247	Canis_familiaris
ENSUAMG00000001608	XRN1	99	99.701	ENSCAFG00020009120	XRN1	99	99.701	Canis_lupus_dingo
ENSUAMG00000001608	XRN1	99	98.204	ENSCHIG00000019192	XRN1	99	92.486	Capra_hircus
ENSUAMG00000001608	XRN1	99	94.000	ENSTSYG00000002705	XRN1	100	91.808	Carlito_syrichta
ENSUAMG00000001608	XRN1	97	69.989	ENSCAPG00000004604	-	99	71.144	Cavia_aperea
ENSUAMG00000001608	XRN1	99	94.105	ENSCCAG00000034800	XRN1	99	97.006	Cebus_capucinus
ENSUAMG00000001608	XRN1	99	94.286	ENSCATG00000041794	XRN1	100	92.799	Cercocebus_atys
ENSUAMG00000001608	XRN1	99	92.554	ENSCLAG00000001451	XRN1	99	95.210	Chinchilla_lanigera
ENSUAMG00000001608	XRN1	99	94.286	ENSCSAG00000011265	XRN1	100	92.857	Chlorocebus_sabaeus
ENSUAMG00000001608	XRN1	61	98.507	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSUAMG00000001608	XRN1	84	58.092	ENSCSAVG00000008584	-	98	43.927	Ciona_savignyi
ENSUAMG00000001608	XRN1	99	94.571	ENSCANG00000037495	XRN1	99	98.204	Colobus_angolensis_palliatus
ENSUAMG00000001608	XRN1	99	92.355	ENSCGRG00001019411	Xrn1	99	94.910	Cricetulus_griseus_chok1gshd
ENSUAMG00000001608	XRN1	99	92.355	ENSCGRG00000012464	Xrn1	99	94.910	Cricetulus_griseus_crigri
ENSUAMG00000001608	XRN1	99	74.762	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSUAMG00000001608	XRN1	99	72.973	ENSCVAG00000013089	xrn1	99	71.531	Cyprinodon_variegatus
ENSUAMG00000001608	XRN1	99	75.436	ENSDARG00000091652	xrn1	98	75.105	Danio_rerio
ENSUAMG00000001608	XRN1	99	92.000	ENSDORG00000013833	Xrn1	100	86.437	Dipodomys_ordii
ENSUAMG00000001608	XRN1	96	51.060	FBgn0020261	pcm	76	38.224	Drosophila_melanogaster
ENSUAMG00000001608	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSUAMG00000001608	XRN1	99	98.204	ENSEASG00005002687	XRN1	99	98.204	Equus_asinus_asinus
ENSUAMG00000001608	XRN1	99	98.503	ENSECAG00000008301	XRN1	100	93.267	Equus_caballus
ENSUAMG00000001608	XRN1	89	88.406	ENSEEUG00000011323	XRN1	92	80.254	Erinaceus_europaeus
ENSUAMG00000001608	XRN1	99	74.842	ENSELUG00000000169	xrn1	89	71.592	Esox_lucius
ENSUAMG00000001608	XRN1	99	97.006	ENSFCAG00000027589	XRN1	100	90.989	Felis_catus
ENSUAMG00000001608	XRN1	99	84.102	ENSFALG00000007021	XRN1	100	73.457	Ficedula_albicollis
ENSUAMG00000001608	XRN1	99	92.451	ENSFDAG00000020494	XRN1	99	92.451	Fukomys_damarensis
ENSUAMG00000001608	XRN1	99	73.768	ENSGMOG00000006396	xrn1	80	66.276	Gadus_morhua
ENSUAMG00000001608	XRN1	99	84.420	ENSGALG00000002706	XRN1	100	74.045	Gallus_gallus
ENSUAMG00000001608	XRN1	99	73.028	ENSGACG00000014328	xrn1	100	58.940	Gasterosteus_aculeatus
ENSUAMG00000001608	XRN1	99	88.024	ENSGAGG00000017535	XRN1	99	77.336	Gopherus_agassizii
ENSUAMG00000001608	XRN1	99	94.000	ENSGGOG00000008047	XRN1	100	92.447	Gorilla_gorilla
ENSUAMG00000001608	XRN1	99	71.722	ENSHBUG00000005908	xrn1	98	69.278	Haplochromis_burtoni
ENSUAMG00000001608	XRN1	99	93.175	ENSHGLG00000014476	XRN1	99	96.407	Heterocephalus_glaber_female
ENSUAMG00000001608	XRN1	99	93.175	ENSHGLG00100015130	XRN1	99	96.407	Heterocephalus_glaber_male
ENSUAMG00000001608	XRN1	99	72.769	ENSHCOG00000014062	xrn1	97	69.163	Hippocampus_comes
ENSUAMG00000001608	XRN1	99	74.921	ENSIPUG00000015229	xrn1	96	61.831	Ictalurus_punctatus
ENSUAMG00000001608	XRN1	99	94.571	ENSSTOG00000013552	XRN1	99	98.204	Ictidomys_tridecemlineatus
ENSUAMG00000001608	XRN1	99	91.087	ENSJJAG00000010863	Xrn1	99	94.611	Jaculus_jaculus
ENSUAMG00000001608	XRN1	99	74.121	ENSKMAG00000021356	xrn1	94	72.340	Kryptolebias_marmoratus
ENSUAMG00000001608	XRN1	99	74.245	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSUAMG00000001608	XRN1	99	80.635	ENSLACG00000009020	XRN1	97	69.640	Latimeria_chalumnae
ENSUAMG00000001608	XRN1	99	78.673	ENSLOCG00000007944	xrn1	96	66.025	Lepisosteus_oculatus
ENSUAMG00000001608	XRN1	99	93.143	ENSLAFG00000015426	XRN1	100	93.639	Loxodonta_africana
ENSUAMG00000001608	XRN1	99	94.286	ENSMFAG00000032599	XRN1	100	92.916	Macaca_fascicularis
ENSUAMG00000001608	XRN1	99	94.286	ENSMMUG00000014038	XRN1	100	92.857	Macaca_mulatta
ENSUAMG00000001608	XRN1	99	94.286	ENSMNEG00000034217	XRN1	100	92.681	Macaca_nemestrina
ENSUAMG00000001608	XRN1	99	73.734	ENSMAMG00000013219	xrn1	92	74.946	Mastacembelus_armatus
ENSUAMG00000001608	XRN1	99	73.460	ENSMZEG00005015099	xrn1	96	60.409	Maylandia_zebra
ENSUAMG00000001608	XRN1	99	82.994	ENSMGAG00000006333	XRN1	100	75.566	Meleagris_gallopavo
ENSUAMG00000001608	XRN1	99	94.286	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSUAMG00000001608	XRN1	99	91.476	ENSMOCG00000008665	Xrn1	99	93.731	Microtus_ochrogaster
ENSUAMG00000001608	XRN1	53	63.653	ENSMMOG00000020896	-	96	64.218	Mola_mola
ENSUAMG00000001608	XRN1	99	87.714	ENSMODG00000021236	XRN1	100	80.700	Monodelphis_domestica
ENSUAMG00000001608	XRN1	99	67.619	ENSMALG00000004098	xrn1	98	64.996	Monopterus_albus
ENSUAMG00000001608	XRN1	99	91.727	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSUAMG00000001608	XRN1	99	91.727	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSUAMG00000001608	XRN1	99	91.822	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSUAMG00000001608	XRN1	99	91.727	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSUAMG00000001608	XRN1	99	99.401	ENSMPUG00000012040	XRN1	100	95.785	Mustela_putorius_furo
ENSUAMG00000001608	XRN1	98	96.262	ENSMLUG00000016885	XRN1	100	90.767	Myotis_lucifugus
ENSUAMG00000001608	XRN1	99	89.627	ENSNGAG00000023964	Xrn1	99	91.714	Nannospalax_galili
ENSUAMG00000001608	XRN1	99	94.000	ENSNLEG00000004726	XRN1	100	92.564	Nomascus_leucogenys
ENSUAMG00000001608	XRN1	81	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSUAMG00000001608	XRN1	73	95.620	ENSOPRG00000007337	-	65	95.620	Ochotona_princeps
ENSUAMG00000001608	XRN1	99	73.259	ENSONIG00000016673	xrn1	99	63.443	Oreochromis_niloticus
ENSUAMG00000001608	XRN1	92	84.753	ENSOANG00000006735	XRN1	99	76.433	Ornithorhynchus_anatinus
ENSUAMG00000001608	XRN1	99	94.571	ENSOCUG00000001861	XRN1	100	89.977	Oryctolagus_cuniculus
ENSUAMG00000001608	XRN1	99	75.158	ENSORLG00000013005	xrn1	93	70.857	Oryzias_latipes
ENSUAMG00000001608	XRN1	99	75.873	ENSORLG00020005559	xrn1	96	61.341	Oryzias_latipes_hni
ENSUAMG00000001608	XRN1	99	75.397	ENSORLG00015022523	xrn1	89	70.697	Oryzias_latipes_hsok
ENSUAMG00000001608	XRN1	99	74.525	ENSOMEG00000015397	xrn1	100	71.254	Oryzias_melastigma
ENSUAMG00000001608	XRN1	99	93.714	ENSOGAG00000000170	XRN1	100	89.233	Otolemur_garnettii
ENSUAMG00000001608	XRN1	99	98.204	ENSOARG00000006343	XRN1	99	93.200	Ovis_aries
ENSUAMG00000001608	XRN1	99	94.286	ENSPPAG00000010180	XRN1	100	92.447	Pan_paniscus
ENSUAMG00000001608	XRN1	99	98.802	ENSPPRG00000007125	XRN1	100	94.441	Panthera_pardus
ENSUAMG00000001608	XRN1	99	98.802	ENSPTIG00000021081	XRN1	100	94.558	Panthera_tigris_altaica
ENSUAMG00000001608	XRN1	99	94.286	ENSPTRG00000015482	XRN1	100	92.506	Pan_troglodytes
ENSUAMG00000001608	XRN1	99	94.286	ENSPANG00000010638	XRN1	100	92.740	Papio_anubis
ENSUAMG00000001608	XRN1	99	86.310	ENSPSIG00000018050	XRN1	100	76.142	Pelodiscus_sinensis
ENSUAMG00000001608	XRN1	99	72.107	ENSPMGG00000002648	xrn1	98	75.917	Periophthalmus_magnuspinnatus
ENSUAMG00000001608	XRN1	99	91.839	ENSPEMG00000020610	Xrn1	99	94.012	Peromyscus_maniculatus_bairdii
ENSUAMG00000001608	XRN1	93	52.454	ENSPMAG00000002975	xrn1	91	72.701	Petromyzon_marinus
ENSUAMG00000001608	XRN1	99	87.358	ENSPCIG00000028735	XRN1	99	87.633	Phascolarctos_cinereus
ENSUAMG00000001608	XRN1	99	74.290	ENSPFOG00000013932	xrn1	99	63.695	Poecilia_formosa
ENSUAMG00000001608	XRN1	99	73.734	ENSPLAG00000021653	xrn1	99	62.921	Poecilia_latipinna
ENSUAMG00000001608	XRN1	99	74.326	ENSPMEG00000003076	xrn1	95	63.212	Poecilia_mexicana
ENSUAMG00000001608	XRN1	99	73.585	ENSPREG00000021147	xrn1	99	68.085	Poecilia_reticulata
ENSUAMG00000001608	XRN1	99	94.000	ENSPPYG00000014172	XRN1	100	92.330	Pongo_abelii
ENSUAMG00000001608	XRN1	92	97.368	ENSPCAG00000005638	XRN1	83	97.368	Procavia_capensis
ENSUAMG00000001608	XRN1	99	94.857	ENSPCOG00000013089	XRN1	99	98.503	Propithecus_coquereli
ENSUAMG00000001608	XRN1	99	97.289	ENSPVAG00000016265	XRN1	96	90.641	Pteropus_vampyrus
ENSUAMG00000001608	XRN1	99	74.092	ENSPNYG00000010570	xrn1	93	69.778	Pundamilia_nyererei
ENSUAMG00000001608	XRN1	99	72.512	ENSPNAG00000023531	xrn1	97	59.728	Pygocentrus_nattereri
ENSUAMG00000001608	XRN1	99	90.768	ENSRNOG00000042951	Xrn1	100	87.644	Rattus_norvegicus
ENSUAMG00000001608	XRN1	99	94.000	ENSRBIG00000041227	XRN1	100	92.213	Rhinopithecus_bieti
ENSUAMG00000001608	XRN1	88	49.319	YGL173C	XRN1	73	49.319	Saccharomyces_cerevisiae
ENSUAMG00000001608	XRN1	99	93.219	ENSSBOG00000029561	XRN1	100	92.096	Saimiri_boliviensis_boliviensis
ENSUAMG00000001608	XRN1	99	85.726	ENSSHAG00000016207	XRN1	100	80.189	Sarcophilus_harrisii
ENSUAMG00000001608	XRN1	99	74.563	ENSSFOG00015024211	xrn1	86	72.095	Scleropages_formosus
ENSUAMG00000001608	XRN1	99	75.753	ENSSMAG00000016534	xrn1	94	70.355	Scophthalmus_maximus
ENSUAMG00000001608	XRN1	99	75.556	ENSSDUG00000010306	xrn1	91	70.627	Seriola_dumerili
ENSUAMG00000001608	XRN1	99	75.556	ENSSLDG00000021543	xrn1	96	70.143	Seriola_lalandi_dorsalis
ENSUAMG00000001608	XRN1	89	87.417	ENSSARG00000007741	-	83	82.335	Sorex_araneus
ENSUAMG00000001608	XRN1	50	72.211	ENSSPAG00000009856	-	96	72.470	Stegastes_partitus
ENSUAMG00000001608	XRN1	99	84.420	ENSTGUG00000008498	XRN1	100	75.174	Taeniopygia_guttata
ENSUAMG00000001608	XRN1	99	73.962	ENSTRUG00000004895	xrn1	96	73.978	Takifugu_rubripes
ENSUAMG00000001608	XRN1	97	72.431	ENSTNIG00000017615	xrn1	90	67.064	Tetraodon_nigroviridis
ENSUAMG00000001608	XRN1	91	95.506	ENSTBEG00000003256	XRN1	84	95.506	Tupaia_belangeri
ENSUAMG00000001608	XRN1	99	98.494	ENSTTRG00000012914	XRN1	100	89.461	Tursiops_truncatus
ENSUAMG00000001608	XRN1	99	99.701	ENSUMAG00000013625	XRN1	100	98.037	Ursus_maritimus
ENSUAMG00000001608	XRN1	99	97.006	ENSVPAG00000004690	XRN1	100	90.925	Vicugna_pacos
ENSUAMG00000001608	XRN1	99	99.701	ENSVVUG00000024461	XRN1	99	99.701	Vulpes_vulpes
ENSUAMG00000001608	XRN1	99	78.956	ENSXETG00000000619	xrn1	97	83.333	Xenopus_tropicalis
ENSUAMG00000001608	XRN1	99	74.881	ENSXCOG00000007917	xrn1	92	70.905	Xiphophorus_couchianus
ENSUAMG00000001608	XRN1	99	73.450	ENSXMAG00000018320	xrn1	92	70.334	Xiphophorus_maculatus