EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUAMG00000003343 (Gene tree)
Gene ID: -
Gene Symbol: HELLS
Alias: LSH|Nbla10143|PASG|SMARCA6
Full Name: helicase%2C lymphoid specific
Gene Type: protein_coding
Species: Ursus_americanus
Status: putative
Strand: Plus strand
Length: 34258 bases
Position: chrLZNR01011974.1:29305-63562
Accession: 4861
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUAMP00000004019	ResIII	PF04851.15	3.4e-07	1	1
ENSUAMP00000004016	ResIII	PF04851.15	7e-07	1	1
ENSUAMP00000004014	ResIII	PF04851.15	7.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUAMT00000004571	HELLS-202	2484	-	ENSUAMP00000004014	827 (aa)	-	-
ENSUAMT00000004573	HELLS-203	2469	-	ENSUAMP00000004016	822 (aa)	-	-
ENSUAMT00000004576	HELLS-204	2430	-	ENSUAMP00000004019	809 (aa)	-	-
ENSUAMT00000004136	HELLS-201	288	-	ENSUAMP00000003629	95 (aa)	-	-

Gene Model

Click here to download ENSUAMG00000003343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUAMG00000003343's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUAMG00000003343	HELLS	66	49.004	ENSUAMG00000020201	SMARCA1	50	49.004
ENSUAMG00000003343	HELLS	67	39.595	ENSUAMG00000021991	CHD1L	53	39.963
ENSUAMG00000003343	HELLS	57	35.556	ENSUAMG00000011824	RAD54L	66	35.556
ENSUAMG00000003343	HELLS	67	38.069	ENSUAMG00000022262	SMARCAD1	56	37.660
ENSUAMG00000003343	HELLS	72	37.851	ENSUAMG00000024036	CHD6	70	34.000
ENSUAMG00000003343	HELLS	72	37.603	ENSUAMG00000004198	CHD8	53	37.603

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUAMG00000003343	HELLS	100	94.769	ENSG00000119969	HELLS	100	95.518	Homo_sapiens
ENSUAMG00000003343	HELLS	96	64.796	ENSAPOG00000007707	hells	97	64.286	Acanthochromis_polyacanthus
ENSUAMG00000003343	HELLS	100	97.813	ENSAMEG00000013525	HELLS	98	97.813	Ailuropoda_melanoleuca
ENSUAMG00000003343	HELLS	83	68.047	ENSACIG00000018996	hells	99	66.857	Amphilophus_citrinellus
ENSUAMG00000003343	HELLS	98	64.472	ENSAOCG00000006348	hells	96	65.074	Amphiprion_ocellaris
ENSUAMG00000003343	HELLS	98	64.596	ENSAPEG00000001422	hells	96	64.706	Amphiprion_percula
ENSUAMG00000003343	HELLS	98	65.271	ENSATEG00000008107	hells	99	65.157	Anabas_testudineus
ENSUAMG00000003343	HELLS	96	81.337	ENSAPLG00000002649	HELLS	99	81.218	Anas_platyrhynchos
ENSUAMG00000003343	HELLS	87	75.278	ENSACAG00000028785	HELLS	96	75.278	Anolis_carolinensis
ENSUAMG00000003343	HELLS	100	93.309	ENSANAG00000034765	-	100	93.429	Aotus_nancymaae
ENSUAMG00000003343	HELLS	98	64.115	ENSACLG00000007613	hells	99	64.115	Astatotilapia_calliptera
ENSUAMG00000003343	HELLS	84	67.894	ENSAMXG00000002088	hells	99	67.634	Astyanax_mexicanus
ENSUAMG00000003343	HELLS	83	95.827	ENSBTAG00000005979	HELLS	100	95.827	Bos_taurus
ENSUAMG00000003343	HELLS	100	93.796	ENSCJAG00000015819	HELLS	100	94.000	Callithrix_jacchus
ENSUAMG00000003343	HELLS	99	96.959	ENSCAFG00000008090	HELLS	98	96.959	Canis_familiaris
ENSUAMG00000003343	HELLS	96	97.586	ENSCAFG00020004809	HELLS	98	97.586	Canis_lupus_dingo
ENSUAMG00000003343	HELLS	100	93.374	ENSCHIG00000019462	HELLS	98	93.374	Capra_hircus
ENSUAMG00000003343	HELLS	100	92.214	ENSTSYG00000005811	-	99	92.704	Carlito_syrichta
ENSUAMG00000003343	HELLS	100	92.457	ENSCPOG00000003043	HELLS	98	92.457	Cavia_porcellus
ENSUAMG00000003343	HELLS	56	95.376	ENSCCAG00000026761	HELLS	99	95.376	Cebus_capucinus
ENSUAMG00000003343	HELLS	100	89.401	ENSCATG00000033830	HELLS	100	94.818	Cercocebus_atys
ENSUAMG00000003343	HELLS	100	92.701	ENSCLAG00000003938	HELLS	100	92.701	Chinchilla_lanigera
ENSUAMG00000003343	HELLS	87	94.818	ENSCSAG00000006181	HELLS	100	94.678	Chlorocebus_sabaeus
ENSUAMG00000003343	HELLS	87	84.136	ENSCPBG00000025739	HELLS	100	84.136	Chrysemys_picta_bellii
ENSUAMG00000003343	HELLS	100	89.516	ENSCANG00000037736	HELLS	100	94.958	Colobus_angolensis_palliatus
ENSUAMG00000003343	HELLS	100	90.389	ENSCGRG00001017410	Hells	100	89.364	Cricetulus_griseus_chok1gshd
ENSUAMG00000003343	HELLS	98	61.200	ENSCSEG00000016985	hells	99	63.764	Cynoglossus_semilaevis
ENSUAMG00000003343	HELLS	64	62.403	ENSCVAG00000000159	hells	97	63.098	Cyprinodon_variegatus
ENSUAMG00000003343	HELLS	95	65.736	ENSDARG00000057738	hells	95	65.324	Danio_rerio
ENSUAMG00000003343	HELLS	78	95.261	ENSDNOG00000017758	HELLS	100	95.261	Dasypus_novemcinctus
ENSUAMG00000003343	HELLS	100	90.876	ENSDORG00000011812	Hells	98	90.754	Dipodomys_ordii
ENSUAMG00000003343	HELLS	75	52.895	ENSEBUG00000016152	hells	93	52.910	Eptatretus_burgeri
ENSUAMG00000003343	HELLS	100	95.383	ENSEASG00005011764	HELLS	100	94.282	Equus_asinus_asinus
ENSUAMG00000003343	HELLS	100	95.255	ENSECAG00000018810	HELLS	98	95.134	Equus_caballus
ENSUAMG00000003343	HELLS	81	97.826	ENSEEUG00000007680	HELLS	90	97.826	Erinaceus_europaeus
ENSUAMG00000003343	HELLS	96	64.232	ENSELUG00000014909	hells	93	63.693	Esox_lucius
ENSUAMG00000003343	HELLS	87	96.919	ENSFCAG00000005206	HELLS	100	96.919	Felis_catus
ENSUAMG00000003343	HELLS	99	81.144	ENSFALG00000007136	HELLS	99	80.414	Ficedula_albicollis
ENSUAMG00000003343	HELLS	100	91.363	ENSFDAG00000010042	HELLS	100	91.849	Fukomys_damarensis
ENSUAMG00000003343	HELLS	99	63.436	ENSFHEG00000022950	hells	97	64.957	Fundulus_heteroclitus
ENSUAMG00000003343	HELLS	99	79.306	ENSGALG00000005451	HELLS	100	82.403	Gallus_gallus
ENSUAMG00000003343	HELLS	98	63.715	ENSGAFG00000001204	hells	94	63.346	Gambusia_affinis
ENSUAMG00000003343	HELLS	94	64.570	ENSGACG00000003897	hells	91	63.974	Gasterosteus_aculeatus
ENSUAMG00000003343	HELLS	87	83.688	ENSGAGG00000010269	HELLS	100	83.688	Gopherus_agassizii
ENSUAMG00000003343	HELLS	100	89.903	ENSGGOG00000008103	HELLS	100	95.238	Gorilla_gorilla
ENSUAMG00000003343	HELLS	98	64.286	ENSHBUG00000010270	hells	99	64.115	Haplochromis_burtoni
ENSUAMG00000003343	HELLS	74	89.571	ENSHGLG00000006537	-	100	89.571	Heterocephalus_glaber_female
ENSUAMG00000003343	HELLS	100	92.944	ENSHGLG00000011377	-	100	92.944	Heterocephalus_glaber_female
ENSUAMG00000003343	HELLS	100	92.701	ENSHGLG00100017230	-	100	92.701	Heterocephalus_glaber_male
ENSUAMG00000003343	HELLS	89	82.442	ENSHGLG00100001957	-	95	82.442	Heterocephalus_glaber_male
ENSUAMG00000003343	HELLS	88	65.070	ENSHCOG00000001119	hells	97	65.070	Hippocampus_comes
ENSUAMG00000003343	HELLS	99	64.190	ENSIPUG00000002634	HELLS	95	63.946	Ictalurus_punctatus
ENSUAMG00000003343	HELLS	100	93.552	ENSSTOG00000021976	HELLS	100	93.552	Ictidomys_tridecemlineatus
ENSUAMG00000003343	HELLS	99	87.268	ENSJJAG00000000865	Hells	99	87.284	Jaculus_jaculus
ENSUAMG00000003343	HELLS	99	65.644	ENSKMAG00000017279	hells	94	65.890	Kryptolebias_marmoratus
ENSUAMG00000003343	HELLS	98	65.025	ENSLBEG00000027807	hells	95	64.214	Labrus_bergylta
ENSUAMG00000003343	HELLS	100	94.039	ENSLAFG00000007049	HELLS	100	94.039	Loxodonta_africana
ENSUAMG00000003343	HELLS	100	94.282	ENSMFAG00000044053	HELLS	99	94.669	Macaca_fascicularis
ENSUAMG00000003343	HELLS	100	86.784	ENSMMUG00000017255	HELLS	100	94.805	Macaca_mulatta
ENSUAMG00000003343	HELLS	100	89.401	ENSMNEG00000042628	HELLS	100	94.818	Macaca_nemestrina
ENSUAMG00000003343	HELLS	100	94.282	ENSMLEG00000041751	HELLS	99	94.669	Mandrillus_leucophaeus
ENSUAMG00000003343	HELLS	95	63.822	ENSMAMG00000009850	hells	99	65.899	Mastacembelus_armatus
ENSUAMG00000003343	HELLS	98	64.286	ENSMZEG00005018414	hells	99	64.115	Maylandia_zebra
ENSUAMG00000003343	HELLS	97	80.000	ENSMGAG00000006818	HELLS	97	81.900	Meleagris_gallopavo
ENSUAMG00000003343	HELLS	98	88.653	ENSMAUG00000021941	Hells	97	88.847	Mesocricetus_auratus
ENSUAMG00000003343	HELLS	71	93.728	ENSMICG00000046554	-	95	93.728	Microcebus_murinus
ENSUAMG00000003343	HELLS	100	88.929	ENSMOCG00000019342	Hells	100	88.686	Microtus_ochrogaster
ENSUAMG00000003343	HELLS	99	60.621	ENSMMOG00000007950	hells	97	60.621	Mola_mola
ENSUAMG00000003343	HELLS	98	85.075	ENSMODG00000005589	-	50	86.329	Monodelphis_domestica
ENSUAMG00000003343	HELLS	98	62.986	ENSMALG00000010244	hells	94	62.861	Monopterus_albus
ENSUAMG00000003343	HELLS	100	90.024	MGP_CAROLIEiJ_G0022930	Hells	100	89.903	Mus_caroli
ENSUAMG00000003343	HELLS	100	90.024	ENSMUSG00000025001	Hells	100	89.903	Mus_musculus
ENSUAMG00000003343	HELLS	100	91.241	MGP_PahariEiJ_G0014423	Hells	100	91.119	Mus_pahari
ENSUAMG00000003343	HELLS	100	90.511	MGP_SPRETEiJ_G0023848	Hells	100	90.389	Mus_spretus
ENSUAMG00000003343	HELLS	100	97.202	ENSMPUG00000017131	HELLS	98	97.202	Mustela_putorius_furo
ENSUAMG00000003343	HELLS	99	91.819	ENSMLUG00000030511	HELLS	98	91.697	Myotis_lucifugus
ENSUAMG00000003343	HELLS	100	90.024	ENSNGAG00000014049	Hells	98	90.024	Nannospalax_galili
ENSUAMG00000003343	HELLS	98	60.826	ENSNBRG00000024242	hells	99	60.826	Neolamprologus_brichardi
ENSUAMG00000003343	HELLS	100	89.631	ENSNLEG00000012987	HELLS	100	95.378	Nomascus_leucogenys
ENSUAMG00000003343	HELLS	100	89.294	ENSODEG00000015916	HELLS	98	89.294	Octodon_degus
ENSUAMG00000003343	HELLS	99	63.926	ENSONIG00000013166	hells	94	64.294	Oreochromis_niloticus
ENSUAMG00000003343	HELLS	100	84.447	ENSOANG00000005139	HELLS	99	84.447	Ornithorhynchus_anatinus
ENSUAMG00000003343	HELLS	100	93.552	ENSOCUG00000026731	HELLS	98	93.431	Oryctolagus_cuniculus
ENSUAMG00000003343	HELLS	99	64.373	ENSORLG00000000987	hells	96	64.536	Oryzias_latipes
ENSUAMG00000003343	HELLS	99	64.251	ENSORLG00020003952	hells	96	64.411	Oryzias_latipes_hni
ENSUAMG00000003343	HELLS	99	64.373	ENSORLG00015010960	hells	96	64.160	Oryzias_latipes_hsok
ENSUAMG00000003343	HELLS	99	63.126	ENSOMEG00000000135	hells	94	63.770	Oryzias_melastigma
ENSUAMG00000003343	HELLS	100	93.066	ENSOGAG00000017145	HELLS	99	93.066	Otolemur_garnettii
ENSUAMG00000003343	HELLS	100	94.647	ENSOARG00000004495	HELLS	98	94.526	Ovis_aries
ENSUAMG00000003343	HELLS	100	89.903	ENSPPAG00000001726	HELLS	100	95.238	Pan_paniscus
ENSUAMG00000003343	HELLS	87	96.779	ENSPPRG00000005839	HELLS	100	96.779	Panthera_pardus
ENSUAMG00000003343	HELLS	99	96.590	ENSPTIG00000007647	HELLS	100	96.779	Panthera_tigris_altaica
ENSUAMG00000003343	HELLS	100	89.903	ENSPTRG00000002778	HELLS	99	94.564	Pan_troglodytes
ENSUAMG00000003343	HELLS	100	89.401	ENSPANG00000033528	HELLS	100	94.818	Papio_anubis
ENSUAMG00000003343	HELLS	99	63.780	ENSPKIG00000010890	hells	98	62.857	Paramormyrops_kingsleyae
ENSUAMG00000003343	HELLS	96	81.463	ENSPSIG00000005462	HELLS	100	81.463	Pelodiscus_sinensis
ENSUAMG00000003343	HELLS	98	61.000	ENSPMGG00000014690	hells	97	66.079	Periophthalmus_magnuspinnatus
ENSUAMG00000003343	HELLS	100	83.090	ENSPEMG00000017579	Hells	100	89.504	Peromyscus_maniculatus_bairdii
ENSUAMG00000003343	HELLS	98	60.988	ENSPMAG00000004376	hells	98	60.714	Petromyzon_marinus
ENSUAMG00000003343	HELLS	99	85.333	ENSPCIG00000013361	HELLS	98	85.333	Phascolarctos_cinereus
ENSUAMG00000003343	HELLS	99	62.791	ENSPFOG00000001954	hells	94	63.035	Poecilia_formosa
ENSUAMG00000003343	HELLS	99	62.668	ENSPLAG00000006504	hells	97	63.610	Poecilia_latipinna
ENSUAMG00000003343	HELLS	99	62.791	ENSPMEG00000003024	hells	97	63.754	Poecilia_mexicana
ENSUAMG00000003343	HELLS	99	62.546	ENSPREG00000020337	hells	94	62.791	Poecilia_reticulata
ENSUAMG00000003343	HELLS	100	89.862	ENSPPYG00000002502	HELLS	98	89.862	Pongo_abelii
ENSUAMG00000003343	HELLS	100	86.983	ENSPCAG00000013618	HELLS	98	86.861	Procavia_capensis
ENSUAMG00000003343	HELLS	100	91.095	ENSPCOG00000023985	HELLS	99	95.245	Propithecus_coquereli
ENSUAMG00000003343	HELLS	92	97.238	ENSPVAG00000017899	HELLS	90	97.238	Pteropus_vampyrus
ENSUAMG00000003343	HELLS	98	62.814	ENSPNYG00000009100	hells	99	62.814	Pundamilia_nyererei
ENSUAMG00000003343	HELLS	96	64.698	ENSPNAG00000029968	hells	96	64.698	Pygocentrus_nattereri
ENSUAMG00000003343	HELLS	100	90.998	ENSRNOG00000047104	Hells	98	90.876	Rattus_norvegicus
ENSUAMG00000003343	HELLS	100	90.998	ENSRNOG00000047692	LOC100911660	100	90.876	Rattus_norvegicus
ENSUAMG00000003343	HELLS	100	88.773	ENSRBIG00000041080	HELLS	99	96.006	Rhinopithecus_bieti
ENSUAMG00000003343	HELLS	100	89.744	ENSRROG00000040169	HELLS	100	94.818	Rhinopithecus_roxellana
ENSUAMG00000003343	HELLS	99	85.212	ENSSHAG00000014358	HELLS	100	85.212	Sarcophilus_harrisii
ENSUAMG00000003343	HELLS	96	66.376	ENSSFOG00015017895	hells	98	65.683	Scleropages_formosus
ENSUAMG00000003343	HELLS	99	64.294	ENSSMAG00000017423	hells	99	63.750	Scophthalmus_maximus
ENSUAMG00000003343	HELLS	98	64.778	ENSSDUG00000016924	hells	99	64.654	Seriola_dumerili
ENSUAMG00000003343	HELLS	98	62.762	ENSSLDG00000018960	hells	94	63.164	Seriola_lalandi_dorsalis
ENSUAMG00000003343	HELLS	100	79.803	ENSSPUG00000017425	HELLS	100	80.296	Sphenodon_punctatus
ENSUAMG00000003343	HELLS	96	65.146	ENSSPAG00000015579	hells	99	66.327	Stegastes_partitus
ENSUAMG00000003343	HELLS	100	95.499	ENSSSCG00000010486	HELLS	98	95.377	Sus_scrofa
ENSUAMG00000003343	HELLS	100	81.212	ENSTGUG00000007157	HELLS	99	80.606	Taeniopygia_guttata
ENSUAMG00000003343	HELLS	95	65.987	ENSTRUG00000000350	hells	96	64.160	Takifugu_rubripes
ENSUAMG00000003343	HELLS	98	55.718	ENSTNIG00000003738	hells	99	56.053	Tetraodon_nigroviridis
ENSUAMG00000003343	HELLS	100	99.148	ENSUMAG00000004748	HELLS	100	98.411	Ursus_maritimus
ENSUAMG00000003343	HELLS	100	93.309	ENSVPAG00000010115	HELLS	98	93.552	Vicugna_pacos
ENSUAMG00000003343	HELLS	99	97.199	ENSVVUG00000022808	HELLS	98	97.199	Vulpes_vulpes
ENSUAMG00000003343	HELLS	99	62.750	ENSXCOG00000013840	hells	97	62.750	Xiphophorus_couchianus
ENSUAMG00000003343	HELLS	99	62.958	ENSXMAG00000005731	hells	97	65.517	Xiphophorus_maculatus